ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC113404.3| Homo sapiens chromosome 5 clone RP11-466P24, comp... 38 3.6
2gb|AC026783.5| Homo sapiens chromosome 5 clone CTD-2129A22, comp... 38 3.6
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
4dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
5dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
6dbj|AK065496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 3.6
7gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 38 3.6

>gb|AC113404.3| Homo sapiens chromosome 5 clone RP11-466P24, complete sequence
          Length = 197591

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     gaaagcctccttgagacgt 30
              |||||||||||||||||||
Sbjct: 149599 gaaagcctccttgagacgt 149581



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>gb|AC026783.5| Homo sapiens chromosome 5 clone CTD-2129A22, complete sequence
          Length = 200232

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     gaaagcctccttgagacgt 30
              |||||||||||||||||||
Sbjct: 178868 gaaagcctccttgagacgt 178850



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      gggaaccaccgaaccagaa 51
               |||||||||||||||||||
Sbjct: 4474360 gggaaccaccgaaccagaa 4474378



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>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005A05
          Length = 162520

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    gggaaccaccgaaccagaa 51
             |||||||||||||||||||
Sbjct: 69090 gggaaccaccgaaccagaa 69108



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>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0470C02
          Length = 158849

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     gggaaccaccgaaccagaa 51
              |||||||||||||||||||
Sbjct: 122041 gggaaccaccgaaccagaa 122059



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>dbj|AK065496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024E12, full
            insert sequence
          Length = 3337

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   gggaaccaccgaaccagaa 51
            |||||||||||||||||||
Sbjct: 2998 gggaaccaccgaaccagaa 3016



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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 11      tgaaagcctccttgagacg 29
               |||||||||||||||||||
Sbjct: 2646359 tgaaagcctccttgagacg 2646377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,793
Number of Sequences: 3902068
Number of extensions: 269793
Number of successful extensions: 17965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17951
Number of HSP's gapped (non-prelim): 14
length of query: 86
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 65
effective length of database: 17,151,101,840
effective search space: 1114821619600
effective search space used: 1114821619600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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