ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32c01 |
|---|---|
| Clone Library Name | barley_pub |
>PHB2_YEAST (P50085) Prohibitin-2| Length = 315 Score = 166 bits (419), Expect = 5e-41 Identities = 76/121 (62%), Positives = 100/121 (82%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N L+NV+GGHRAIV++R+ G+ +++ EGTH + PW + PIIYDVRA+P V S +G++ Sbjct: 55 NNALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTK 114 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQMV I RVL+RP +LPT+YRTLG++Y+ERVLPSI++E LKAVVAQ+NASQLITQR Sbjct: 115 DLQMVNITCRVLSRPDVVQLPTIYRTLGQDYDERVLPSIVNEVLKAVVAQFNASQLITQR 174 Query: 531 E 533 E Sbjct: 175 E 175
>PHB2_CAEEL (P50093) Mitochondrial prohibitin complex protein 2 (Prohibitin-2)| Length = 286 Score = 162 bits (411), Expect = 4e-40 Identities = 76/120 (63%), Positives = 97/120 (80%) Frame = +3 Query: 174 KTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRD 353 ++++ VE GHRAI+FNR+ G+ +Y EG H IPWF+ PIIYD+RARPN + S +GS+D Sbjct: 30 QSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKD 89 Query: 354 LQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 LQMV IGLRVL+RP PE L +YRTLG+N+ ERVLPSI +E LK VVA++NASQLITQR+ Sbjct: 90 LQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQ 149
>PHB2_RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (BAP-37) Length = 299 Score = 157 bits (396), Expect = 2e-38 Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Frame = +3 Query: 93 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 269 R+PS P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 270 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENYNE 449 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y E Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEE 130 Query: 450 RVLPSIIHETLKAVVAQYNASQLITQR 530 RVLPSI++E LK+VVA++NASQLITQR Sbjct: 131 RVLPSIVNEVLKSVVAKFNASQLITQR 157
>L2CC_DROME (P24156) Protein l(2)37Cc| Length = 276 Score = 156 bits (394), Expect = 4e-38 Identities = 73/121 (60%), Positives = 95/121 (78%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNVEGGHRA++F+R GIK+ V EGTH IPW +RPII+D+R++P V +GS+ Sbjct: 24 NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+P++LP +Y LG++Y+ERVLPSI E LKAVVAQ++A +LITQR Sbjct: 84 DLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) Length = 299 Score = 155 bits (393), Expect = 5e-38 Identities = 76/147 (51%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Frame = +3 Query: 93 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 269 R+P+ P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 270 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENYNE 449 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y E Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEE 130 Query: 450 RVLPSIIHETLKAVVAQYNASQLITQR 530 RVLPSI++E LK+VVA++NASQLITQR Sbjct: 131 RVLPSIVNEVLKSVVAKFNASQLITQR 157
>PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) (D-prohibitin) Length = 299 Score = 155 bits (393), Expect = 5e-38 Identities = 76/147 (51%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Frame = +3 Query: 93 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 269 R+P+ P ++++ VEGGHRAI FNR+ G++ D + EG H Sbjct: 11 RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70 Query: 270 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYRTLGENYNE 449 IPWF+ PIIYD+RARP + S +GS+DLQMV I LRVL+RP + LP+MY+ LG +Y E Sbjct: 71 RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEE 130 Query: 450 RVLPSIIHETLKAVVAQYNASQLITQR 530 RVLPSI++E LK+VVA++NASQLITQR Sbjct: 131 RVLPSIVNEVLKSVVAKFNASQLITQR 157
>PHB1_CAEEL (Q9BKU4) Mitochondrial prohibitin complex protein 1 (Prohibitin-1)| Length = 275 Score = 147 bits (372), Expect = 1e-35 Identities = 67/118 (56%), Positives = 93/118 (78%) Frame = +3 Query: 180 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDLQ 359 LYNV+GG RA++F+R G+K++V EGTH +IPW ++PII+D+R+ P V + +GS+DLQ Sbjct: 30 LYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQ 89 Query: 360 MVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 V I LR+L RP P+RLP +Y +G +Y ERVLPSI +E LKAVVAQ++A ++ITQRE Sbjct: 90 NVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQRE 147
>PHB_RAT (P67779) Prohibitin| Length = 272 Score = 145 bits (366), Expect = 7e-35 Identities = 67/121 (55%), Positives = 93/121 (76%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+ +LP +Y ++GE+Y+ERVLPSI E LK+VVA+++A +LITQR Sbjct: 84 DLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB_MOUSE (P67778) Prohibitin (B-cell receptor-associated protein 32) (BAP| 32) Length = 272 Score = 145 bits (366), Expect = 7e-35 Identities = 67/121 (55%), Positives = 93/121 (76%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+ +LP +Y ++GE+Y+ERVLPSI E LK+VVA+++A +LITQR Sbjct: 84 DLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB_HUMAN (P35232) Prohibitin| Length = 272 Score = 144 bits (362), Expect = 2e-34 Identities = 66/121 (54%), Positives = 93/121 (76%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+ +LP ++ ++GE+Y+ERVLPSI E LK+VVA+++A +LITQR Sbjct: 84 DLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB_CHICK (P84173) Prohibitin| Length = 272 Score = 144 bits (362), Expect = 2e-34 Identities = 65/121 (53%), Positives = 93/121 (76%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP + +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+ +LP ++ ++GE+Y+ERVLPSI E LK+VVA+++A +LITQR Sbjct: 84 DLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB_BOVIN (Q3T165) Prohibitin| Length = 272 Score = 144 bits (362), Expect = 2e-34 Identities = 66/121 (54%), Positives = 93/121 (76%) Frame = +3 Query: 171 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 350 N LYNV+ GHRA++F+R G++D V EGTH +IPW ++PII+D R+RP V +GS+ Sbjct: 24 NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83 Query: 351 DLQMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 530 DLQ V I LR+L RP+ +LP ++ ++GE+Y+ERVLPSI E LK+VVA+++A +LITQR Sbjct: 84 DLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQR 143 Query: 531 E 533 E Sbjct: 144 E 144
>PHB1_YEAST (P40961) Prohibitin-1| Length = 287 Score = 138 bits (347), Expect = 1e-32 Identities = 61/119 (51%), Positives = 94/119 (78%) Frame = +3 Query: 177 TLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDL 356 ++Y+V+GG R ++F+R+ G+K +V EGTH ++PW ++ IIYDVR +P + + +G++DL Sbjct: 28 SMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDL 87 Query: 357 QMVRIGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 QMV + LRVL RP +LP +Y+ LG +Y+ERVLPSI +E LK++VAQ++A++LITQRE Sbjct: 88 QMVSLTLRVLHRPEVLQLPAIYQNLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQRE 146
>HAND2_CHICK (Q90690) Heart- and neural crest derivatives-expressed protein 2| (Deciduum, heart, autonomic nervous system and neural crest derivatives-expressed protein 2) (dHAND) Length = 216 Score = 33.5 bits (75), Expect = 0.38 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +2 Query: 248 LPGGHPHRHPLVR-EAHHLRRPRAAQPRREHLREPGSPDGENWSSCSY 388 L GG PH HP+V E + LRR R + RR LR G P W S+ Sbjct: 3 LVGGFPH-HPVVHHEGYPLRRRRCRRRRRHPLRPRGEPLLHGWLISSH 49
>LAG3_CAEEL (Q09260) Protein lag-3 (Abnormal germ line proliferation protein 3)| (Abnormal cell lineage protein 3) Length = 490 Score = 33.5 bits (75), Expect = 0.38 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +2 Query: 209 HRLQPPRGDQGQGLPGGHP---HRHPLVREAHHLRRPRA 316 H+ Q G G+P G+P H HP AHH+ +P A Sbjct: 447 HQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHMPQPTA 485
>RP54_KLEOX (P06223) RNA polymerase sigma-54 factor| Length = 477 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = -2 Query: 335 ALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAEVER 156 A+D+ G V+D GDD++G V+ VL ++ + G VA+ D+ + L+ ++ + Sbjct: 147 AVDDTGYLTISVEDIVESIGDDEIGLEEVEAVLKRIQRFDPVG-VAAKDLRDCLLVQLSQ 205 Query: 155 GAAEQPELDQ 126 A E P +++ Sbjct: 206 FAKETPWIEE 215
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/47 (40%), Positives = 20/47 (42%) Frame = +2 Query: 218 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 358 QPP Q + HP H L HH A P R HL PGSP Sbjct: 1244 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPGSP 1284
>IF2P_NATPD (Q3IMS5) Probable translation initiation factor IF-2| Length = 602 Score = 30.8 bits (68), Expect = 2.5 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = -2 Query: 395 GSCKNTKTNSHHLEIPAPGGALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLD-PLEAV 219 GS + EIP + +V PR V EP + V A VD++ D EA Sbjct: 372 GSLEAIAAALEEAEIPIVRAEVGDVAPRDIAVASTAEEPKHEAVLAFNVDVLDDAEREAE 431 Query: 218 EDDGPVASLDVVEGLVAEVERGAAEQPELDQ 126 E D + + DV+ LV E + E E Q Sbjct: 432 EKDVKLFADDVIYQLVEEYDDYVTEIEEAQQ 462
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 30.4 bits (67), Expect = 3.2 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Frame = +2 Query: 218 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQP-RREHLREPGSP---DGENWSSCS 385 QPP GQ P P + V + HH R + P HLRE SP S Sbjct: 1018 QPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLREAPSPLMIHSPQMSQFQ 1077 Query: 386 YTTHARETTNYVQDPGGELQ*ESV 457 TH VQ EL+ SV Sbjct: 1078 SLTHQSPPQQNVQPKKQELRAASV 1101
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 30.4 bits (67), Expect = 3.2 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Frame = +2 Query: 218 QPPRGDQGQGL--PGGHPHRHPLVREAHHLRRPRAAQP---------RREHLREPGSP 358 Q PRG G HP R L + H RPR QP R HLR+ P Sbjct: 137 QHPRGRHASDRVQDGAHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQAPRP 194
>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +2 Query: 242 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 358 QG P PH HP L R A P +L EP P Sbjct: 29 QGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKP 67
>Y1511_PYRHO (O59180) Hypothetical protein PH1511| Length = 266 Score = 30.0 bits (66), Expect = 4.2 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Frame = +3 Query: 204 RAIVFN--RLEGIKDKVYPEGTHIVIPWFERPIIYDVRARP-NLVESTSGSRDLQMVRIG 374 RA++F R+ G + G +IP FE+ +I D+R + ++ + ++D VR+ Sbjct: 33 RAVIFRLGRVVGARGP----GLFFIIPIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVN 88 Query: 375 LRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 V R + P T +NY I TL++V+ Q + +L+++R+ Sbjct: 89 AVVYFRVVD---PVKAVTQVKNY-IMATSQISQTTLRSVIGQAHLDELLSERD 137
>Y658_PYRAB (Q9V0Y1) Hypothetical protein PYRAB06580| Length = 268 Score = 30.0 bits (66), Expect = 4.2 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Frame = +3 Query: 204 RAIVFN--RLEGIKDKVYPEGTHIVIPWFERPIIYDVRARP-NLVESTSGSRDLQMVRIG 374 RA++F R+ G + G +IP FE+ +I D+R + ++ + ++D VR+ Sbjct: 33 RAVIFRLGRVVGARGP----GLFFIIPIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVN 88 Query: 375 LRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 V R + P T +NY I TL++V+ Q + +L+++R+ Sbjct: 89 AVVYFRVVD---PVKAVTQVKNY-IMATSQISQTTLRSVIGQAHLDELLSERD 137
>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 30.0 bits (66), Expect = 4.2 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +2 Query: 242 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 358 QG P PH HP L R A P +L EP P Sbjct: 29 QGTPDAAPHLHPAPPRGPRLSRFPACGPLEPYLPEPAKP 67
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +2 Query: 251 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 367 P HPH HP AHHL A P H P G+ Sbjct: 286 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 321
>BOC_MOUSE (Q6AZB0) Brother of CDO precursor (Protein BOC)| Length = 1110 Score = 29.6 bits (65), Expect = 5.5 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 427 PWGRTTMRECCLQSFMKHSKLWLHNTMPVS*SHRER 534 PWG++ C ++ S LWL N +P++ S R R Sbjct: 330 PWGQSAKLTCEVRGNPPPSVLWLRNAVPLTSSQRLR 365
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 29.6 bits (65), Expect = 5.5 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Frame = +2 Query: 224 PRGDQGQGLPGGHPHRH------PLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCS 385 PR G P HPHR P HH R RAA P S E+ SSC Sbjct: 1220 PRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCP 1279 Query: 386 YTTHARETT 412 AR T Sbjct: 1280 RAAPARRLT 1288
>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)| (P-Frk) Length = 375 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +2 Query: 251 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 367 P HPH HP AHHL A P H P G+ Sbjct: 285 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 320
>XERC2_RALSO (Q8XTL6) Tyrosine recombinase xerC 2| Length = 347 Score = 29.3 bits (64), Expect = 7.2 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 180 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLV 329 LY+V+ R +G KD+V P G + W +R Y + ARP L+ Sbjct: 179 LYDVDATRRLAFVRDGKGAKDRVVPVGVR-ALAWLDR---YLLEARPQLI 224
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.3 bits (64), Expect = 7.2 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 212 RLQPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCSYT 391 + QPPR + + G H + H+ +P AQ +E LR PGSP + S T Sbjct: 1038 KCQPPR-KKSHRVSGKERPNHSR-GDPSHVTQPPPAQGSKEVLRAPGSPHSQQLHPPSPT 1095 Query: 392 TH 397 H Sbjct: 1096 EH 1097
>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 652 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -2 Query: 299 DDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAE 165 D+GP EP DD+ G + + E DDG ++ +EG + E Sbjct: 200 DEGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELRE 244
>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1070 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 398 HGSCKNTKTNSHHLEIPAPGGALDEV--GPRADVVDDGPLEPGDDDVGAL 255 HG + N+ +E+ PG A DE+ RAD+ + GP DD GA+ Sbjct: 868 HGDLLADRLNTRAIEVVEPGAAWDELAYSARADMSELGP--AFGDDAGAV 915
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/47 (38%), Positives = 19/47 (40%) Frame = +2 Query: 218 QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 358 QPP Q + HP H L HH A P R HL P SP Sbjct: 1275 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPSSP 1315
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 28.9 bits (63), Expect = 9.3 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Frame = +2 Query: 221 PPRGDQGQGLPGGHPHRHPLVREA-----HHLRRPRAAQPRREHLREPGSPDGENWSSCS 385 PPR G P HPHR A HH R RAA P S E+ SSC Sbjct: 1207 PPRRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRSLEDLSSCP 1266 Query: 386 YTTHARETT 412 R T Sbjct: 1267 RAAPTRRLT 1275
>SPEE1_RALSO (Q8XQC5) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 510 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -3 Query: 343 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 200 P VL+ RLG RT + GL N + +W L S RL+ W Sbjct: 156 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 203
>Y827_METJA (Q58237) Hypothetical protein MJ0827| Length = 199 Score = 28.9 bits (63), Expect = 9.3 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Frame = +3 Query: 192 EGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRAR-PNLVESTSGSRDLQMVR 368 EGG ++F RL + K+ P G +I+IP+ + P+ D+R R ++ ++D +V+ Sbjct: 32 EGG---LIF-RLGRVIGKLKP-GINIIIPFLDVPVKVDMRTRVTDIPPQEMITKDNAVVK 86 Query: 369 IGLRVLTRPMPERLPTMYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 533 + V R + + E+Y E + ++ TL+A++ +++ +RE Sbjct: 87 VDAVVYYRVIDVEKAILE---VEDY-EYAIINLAQTTLRAIIGSMELDEVLNKRE 137
>SPEE2_RALSO (Q8XQC8) Probable spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 525 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -3 Query: 343 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 200 P VL+ RLG RT + GL N + +W L S RL+ W Sbjct: 171 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,652,789 Number of Sequences: 219361 Number of extensions: 1609055 Number of successful extensions: 5032 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5020 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
