Clone Name | bart32b04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 204 bits (103), Expect = 4e-50 Identities = 112/115 (97%) Strand = Plus / Plus Query: 1 ccgcacacatcacatcacaaacgaagcgcggcacgcaatggcgccctcctcgtcgtctcc 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 ccgcatacatcacatcacaaacgaagcgcggcacgcaatggcgccctcctcgtcgtctcc 86 Query: 61 actgccggcgtctccgctgctcgagctgctgatggtgccgctcctgctcaccatg 115 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 87 actgccggcgtctccgctgctcgtgctgctgatggtgccgctcctgctcgccatg 141
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.085 Identities = 25/26 (96%) Strand = Plus / Minus Query: 20 aacgaagcgcggcacgcaatggcgcc 45 ||||||||||| |||||||||||||| Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 cgtcgtctccactgccggcgt 71 ||||||||||||||||||||| Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 cgtcgtctccactgccggcgt 71 ||||||||||||||||||||| Sbjct: 101881 cgtcgtctccactgccggcgt 101861
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 1073259 cgctgctcgagctgctgatg 1073240
>gb|BC081052.1| Xenopus laevis MGC81841 protein, mRNA (cDNA clone MGC:81841 IMAGE:7008211), complete cds Length = 4208 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gagctgctgatggtgccgct 102 |||||||||||||||||||| Sbjct: 461 gagctgctgatggtgccgct 480
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gagctgctgatggtgccgct 102 |||||||||||||||||||| Sbjct: 2893544 gagctgctgatggtgccgct 2893525
>gb|BC043776.1| Xenopus laevis 1-acylglycerol-3-phosphate O-acyltransferase 3, mRNA (cDNA clone MGC:52981 IMAGE:4930744), complete cds Length = 3509 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gagctgctgatggtgccgct 102 |||||||||||||||||||| Sbjct: 427 gagctgctgatggtgccgct 446
>ref|NM_001008118.1| Xenopus tropicalis agpat3 protein (agpat3), mRNA Length = 2728 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gagctgctgatggtgccgct 102 |||||||||||||||||||| Sbjct: 432 gagctgctgatggtgccgct 451
>gb|BC081323.1| Xenopus tropicalis agpat3 protein, mRNA (cDNA clone MGC:89440 IMAGE:6990778), complete cds Length = 2728 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gagctgctgatggtgccgct 102 |||||||||||||||||||| Sbjct: 432 gagctgctgatggtgccgct 451
>ref|NM_001024829.1| Gallus gallus toll-interleukin 1 receptor (TIR) domain containing adaptor protein (TIRAP), mRNA Length = 1001 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 507 cgctgctcgagctgctgatg 488
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ctgctgatggtgccgctcctgctc 109 ||||||||||||||||| |||||| Sbjct: 64654 ctgctgatggtgccgctgctgctc 64631
>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151), mRNA Length = 2463 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 1864 gctgctgatggtgctgctcctgct 1841
>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151), mRNA Length = 2212 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 1613 gctgctgatggtgctgctcctgct 1590
>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151), mRNA Length = 2766 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 2167 gctgctgatggtgctgctcctgct 2144
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 152968 gctgctgatggtgctgctcctgct 152991
>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA Length = 2337 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 1624 gctgctgatggtgctgctcctgct 1601
>gb|DQ019929.1| Gallus gallus toll-interleukin 1 receptor domain-containing adaptor protein (TIRAP) mRNA, complete cds Length = 1001 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 507 cgctgctcgagctgctgatg 488
>emb|BX931654.2| Gallus gallus finished cDNA, clone ChEST750l9 Length = 1365 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 510 cgctgctcgagctgctgatg 491
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 30637 gctgctgatggtgctgctcctgct 30660
>emb|BX934686.1| Gallus gallus finished cDNA, clone ChEST857e15 Length = 842 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 294 cgctgctcgagctgctgatg 275
>emb|BX933959.1| Gallus gallus finished cDNA, clone ChEST11o10 Length = 1552 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 697 cgctgctcgagctgctgatg 678
>emb|BX929613.1| Gallus gallus finished cDNA, clone ChEST738n1 Length = 1157 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgctgctcgagctgctgatg 94 |||||||||||||||||||| Sbjct: 302 cgctgctcgagctgctgatg 283
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 54 cgtctccactgccggcgtctccgctgct 81 |||| |||| |||||||||||||||||| Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gctgctgatggtgccgctcctgct 108 |||||||||||||| ||||||||| Sbjct: 122980 gctgctgatggtgctgctcctgct 123003
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ctgccggcgtctccgctgct 81 |||||||||||||||||||| Sbjct: 21719 ctgccggcgtctccgctgct 21738
>ref|NM_183994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2820 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 cgccctcctcgtcgtctcc 60 ||||||||||||||||||| Sbjct: 308 cgccctcctcgtcgtctcc 326
>ref|NM_190029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 426 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 44 tcctcgtcgtctccactgc 62
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gctgatggtgccgctcctg 106 ||||||||||||||||||| Sbjct: 598601 gctgatggtgccgctcctg 598619
>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5' end of the GPR64 gene for G protein-coupled receptor 64 and a CpG island, complete sequence Length = 191318 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 cacacatcacatcacaaac 22 ||||||||||||||||||| Sbjct: 21812 cacacatcacatcacaaac 21830
>emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in linkage group 25, complete sequence Length = 189510 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 cacacatcacatcacaaac 22 ||||||||||||||||||| Sbjct: 130117 cacacatcacatcacaaac 130099
>emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 in linkage group 25, complete sequence Length = 173989 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 ccgctgctcgagctgctga 92 ||||||||||||||||||| Sbjct: 96695 ccgctgctcgagctgctga 96713
>gb|AE012407.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 315 of 460 of the complete genome Length = 12052 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 gcgcggcacgcaatggcgc 44 ||||||||||||||||||| Sbjct: 5408 gcgcggcacgcaatggcgc 5390
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 tggtgccgctcctgctcaccatg 115 ||||||||| ||||||||||||| Sbjct: 4751115 tggtgccgcccctgctcaccatg 4751137
>ref|XM_701478.1| PREDICTED: Danio rerio hypothetical protein LOC571020 (LOC571020), partial mRNA Length = 588 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ccgctgctcgagctgctga 92 ||||||||||||||||||| Sbjct: 106 ccgctgctcgagctgctga 88
>gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete sequence Length = 36144 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 cctcctcgtcgtctccact 63 ||||||||||||||||||| Sbjct: 33567 cctcctcgtcgtctccact 33549
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 gcgcggcacgcaatggcgc 44 ||||||||||||||||||| Sbjct: 1428926 gcgcggcacgcaatggcgc 1428944
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 40891823 tcctcgtcgtctccactgc 40891841 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 24927023 tcctcgtcgtctccactgc 24927005 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 21382762 tcctcgtcgtctccactgc 21382780 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 cgccctcctcgtcgtctcc 60 ||||||||||||||||||| Sbjct: 13777952 cgccctcctcgtcgtctcc 13777970
>gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128 of 195 of the complete sequence Length = 13507 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 gctgatggtgccgctcctg 106 ||||||||||||||||||| Sbjct: 10587 gctgatggtgccgctcctg 10569
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 103929 tcctcgtcgtctccactgc 103947
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 104700 tcctcgtcgtctccactgc 104718
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 20248 tcctcgtcgtctccactgc 20266
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 cgccctcctcgtcgtctcc 60 ||||||||||||||||||| Sbjct: 116280 cgccctcctcgtcgtctcc 116298
>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence Length = 109999 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 gcacacatcacatcacaaa 21 ||||||||||||||||||| Sbjct: 55334 gcacacatcacatcacaaa 55352
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 93 tggtgccgctcctgctcaccatg 115 ||||||||||||||| ||||||| Sbjct: 2571284 tggtgccgctcctgcgcaccatg 2571262
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gctgatggtgccgctcctg 106 ||||||||||||||||||| Sbjct: 620098 gctgatggtgccgctcctg 620116
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 150143 tcctcgtcgtctccactgc 150125
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 cgccctcctcgtcgtctcc 60 ||||||||||||||||||| Sbjct: 15355 cgccctcctcgtcgtctcc 15373
>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468H06 Length = 155031 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tcctcgtcgtctccactgc 65 ||||||||||||||||||| Sbjct: 24148 tcctcgtcgtctccactgc 24166
>dbj|AK069585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M24, full insert sequence Length = 3249 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 cgccctcctcgtcgtctcc 60 ||||||||||||||||||| Sbjct: 113 cgccctcctcgtcgtctcc 131
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 tgctcgagctgctgatggt 96 ||||||||||||||||||| Sbjct: 3709105 tgctcgagctgctgatggt 3709087
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gctgatggtgccgctcctg 106 ||||||||||||||||||| Sbjct: 616395 gctgatggtgccgctcctg 616413
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 cgagctgctgatggtgccg 100 ||||||||||||||||||| Sbjct: 2467588 cgagctgctgatggtgccg 2467570
>dbj|AB025225.1| Streptomyces griseus gene for AfsR-g, complete cds Length = 6221 Score = 38.2 bits (19), Expect = 5.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 76 gctgctcgagctgctgatggtgccgct 102 ||||| |||||||||||||||| |||| Sbjct: 2832 gctgcgcgagctgctgatggtggcgct 2858 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 793,305 Number of Sequences: 3902068 Number of extensions: 793305 Number of successful extensions: 70599 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69627 Number of HSP's gapped (non-prelim): 972 length of query: 115 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 94 effective length of database: 17,151,101,840 effective search space: 1612203572960 effective search space used: 1612203572960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)