ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 4e-50
2gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.085
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.34
4dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.34
5gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 1.3
6gb|BC081052.1| Xenopus laevis MGC81841 protein, mRNA (cDNA clone... 40 1.3
7emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 1.3
8gb|BC043776.1| Xenopus laevis 1-acylglycerol-3-phosphate O-acylt... 40 1.3
9ref|NM_001008118.1| Xenopus tropicalis agpat3 protein (agpat3), ... 40 1.3
10gb|BC081323.1| Xenopus tropicalis agpat3 protein, mRNA (cDNA clo... 40 1.3
11ref|NM_001024829.1| Gallus gallus toll-interleukin 1 receptor (T... 40 1.3
12emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 40 1.3
13ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript ... 40 1.3
14ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript ... 40 1.3
15ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript ... 40 1.3
16gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 40 1.3
17gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA 40 1.3
18gb|DQ019929.1| Gallus gallus toll-interleukin 1 receptor domain-... 40 1.3
19emb|BX931654.2| Gallus gallus finished cDNA, clone ChEST750l9 40 1.3
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
21gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 40 1.3
22emb|BX934686.1| Gallus gallus finished cDNA, clone ChEST857e15 40 1.3
23emb|BX933959.1| Gallus gallus finished cDNA, clone ChEST11o10 40 1.3
24emb|BX929613.1| Gallus gallus finished cDNA, clone ChEST738n1 40 1.3
25dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
26dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
27gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 40 1.3
28gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 1.3
29ref|NM_183994.1| Oryza sativa (japonica cultivar-group), predic... 38 5.3
30ref|NM_190029.1| Oryza sativa (japonica cultivar-group), predic... 38 5.3
31gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 38 5.3
32emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chro... 38 5.3
33emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in... 38 5.3
34emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 i... 38 5.3
35gb|AE012407.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 5.3
36dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 5.3
37ref|XM_701478.1| PREDICTED: Danio rerio hypothetical protein LOC... 38 5.3
38gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete... 38 5.3
39gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 5.3
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
41gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128... 38 5.3
42dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
43dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
44dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
45dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
46gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, comp... 38 5.3
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 5.3
48gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 5.3
49dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
50dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
51dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
52dbj|AK069585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.3
53gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 5.3
54emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 38 5.3
55dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 38 5.3
56dbj|AB025225.1| Streptomyces griseus gene for AfsR-g, complete cds 38 5.3

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
           insert sequence
          Length = 1094

 Score =  204 bits (103), Expect = 4e-50
 Identities = 112/115 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgcacacatcacatcacaaacgaagcgcggcacgcaatggcgccctcctcgtcgtctcc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  ccgcatacatcacatcacaaacgaagcgcggcacgcaatggcgccctcctcgtcgtctcc 86

                                                                  
Query: 61  actgccggcgtctccgctgctcgagctgctgatggtgccgctcctgctcaccatg 115
           ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 87  actgccggcgtctccgctgctcgtgctgctgatggtgccgctcctgctcgccatg 141



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 20      aacgaagcgcggcacgcaatggcgcc 45
               ||||||||||| ||||||||||||||
Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 51       cgtcgtctccactgccggcgt 71
                |||||||||||||||||||||
Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     cgtcgtctccactgccggcgt 71
              |||||||||||||||||||||
Sbjct: 101881 cgtcgtctccactgccggcgt 101861



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      cgctgctcgagctgctgatg 94
               ||||||||||||||||||||
Sbjct: 1073259 cgctgctcgagctgctgatg 1073240



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>gb|BC081052.1| Xenopus laevis MGC81841 protein, mRNA (cDNA clone MGC:81841
           IMAGE:7008211), complete cds
          Length = 4208

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagctgctgatggtgccgct 102
           ||||||||||||||||||||
Sbjct: 461 gagctgctgatggtgccgct 480



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      gagctgctgatggtgccgct 102
               ||||||||||||||||||||
Sbjct: 2893544 gagctgctgatggtgccgct 2893525



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>gb|BC043776.1| Xenopus laevis 1-acylglycerol-3-phosphate O-acyltransferase 3, mRNA
           (cDNA clone MGC:52981 IMAGE:4930744), complete cds
          Length = 3509

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagctgctgatggtgccgct 102
           ||||||||||||||||||||
Sbjct: 427 gagctgctgatggtgccgct 446



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>ref|NM_001008118.1| Xenopus tropicalis agpat3 protein (agpat3), mRNA
          Length = 2728

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagctgctgatggtgccgct 102
           ||||||||||||||||||||
Sbjct: 432 gagctgctgatggtgccgct 451



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>gb|BC081323.1| Xenopus tropicalis agpat3 protein, mRNA (cDNA clone MGC:89440
           IMAGE:6990778), complete cds
          Length = 2728

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagctgctgatggtgccgct 102
           ||||||||||||||||||||
Sbjct: 432 gagctgctgatggtgccgct 451



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>ref|NM_001024829.1| Gallus gallus toll-interleukin 1 receptor (TIR) domain containing
           adaptor protein (TIRAP), mRNA
          Length = 1001

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 507 cgctgctcgagctgctgatg 488



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    ctgctgatggtgccgctcctgctc 109
             ||||||||||||||||| ||||||
Sbjct: 64654 ctgctgatggtgccgctgctgctc 64631



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>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151),
            mRNA
          Length = 2463

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 85   gctgctgatggtgccgctcctgct 108
            |||||||||||||| |||||||||
Sbjct: 1864 gctgctgatggtgctgctcctgct 1841



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>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151),
            mRNA
          Length = 2212

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 85   gctgctgatggtgccgctcctgct 108
            |||||||||||||| |||||||||
Sbjct: 1613 gctgctgatggtgctgctcctgct 1590



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>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151),
            mRNA
          Length = 2766

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 85   gctgctgatggtgccgctcctgct 108
            |||||||||||||| |||||||||
Sbjct: 2167 gctgctgatggtgctgctcctgct 2144



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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR07P02, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     gctgctgatggtgccgctcctgct 108
              |||||||||||||| |||||||||
Sbjct: 152968 gctgctgatggtgctgctcctgct 152991



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>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 85   gctgctgatggtgccgctcctgct 108
            |||||||||||||| |||||||||
Sbjct: 1624 gctgctgatggtgctgctcctgct 1601



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>gb|DQ019929.1| Gallus gallus toll-interleukin 1 receptor domain-containing adaptor
           protein (TIRAP) mRNA, complete cds
          Length = 1001

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 507 cgctgctcgagctgctgatg 488



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>emb|BX931654.2| Gallus gallus finished cDNA, clone ChEST750l9
          Length = 1365

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 510 cgctgctcgagctgctgatg 491



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 54      cgtctccactgccggcgtctccgctgct 81
               |||| |||| ||||||||||||||||||
Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985



 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 54      cgtctccactgccggcgtctccgctgct 81
               |||| |||| ||||||||||||||||||
Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994



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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
             BACR03K23, complete sequence
          Length = 160346

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    gctgctgatggtgccgctcctgct 108
             |||||||||||||| |||||||||
Sbjct: 30637 gctgctgatggtgctgctcctgct 30660



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>emb|BX934686.1| Gallus gallus finished cDNA, clone ChEST857e15
          Length = 842

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 294 cgctgctcgagctgctgatg 275



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>emb|BX933959.1| Gallus gallus finished cDNA, clone ChEST11o10
          Length = 1552

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 697 cgctgctcgagctgctgatg 678



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>emb|BX929613.1| Gallus gallus finished cDNA, clone ChEST738n1
          Length = 1157

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  cgctgctcgagctgctgatg 94
           ||||||||||||||||||||
Sbjct: 302 cgctgctcgagctgctgatg 283



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    cgtctccactgccggcgtctccgctgct 81
             |||| |||| ||||||||||||||||||
Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854



 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 54   cgtctccactgccggcgtctccgctgct 81
            |||| |||| ||||||||||||||||||
Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863



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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0638A12
          Length = 140731

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 54     cgtctccactgccggcgtctccgctgct 81
              |||| |||| ||||||||||||||||||
Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359



 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    cgtctccactgccggcgtctccgctgct 81
             |||| |||| ||||||||||||||||||
Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368



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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     gctgctgatggtgccgctcctgct 108
              |||||||||||||| |||||||||
Sbjct: 122980 gctgctgatggtgctgctcctgct 123003



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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ctgccggcgtctccgctgct 81
             ||||||||||||||||||||
Sbjct: 21719 ctgccggcgtctccgctgct 21738



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>ref|NM_183994.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2820

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 42  cgccctcctcgtcgtctcc 60
           |||||||||||||||||||
Sbjct: 308 cgccctcctcgtcgtctcc 326



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>ref|NM_190029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 426

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 47 tcctcgtcgtctccactgc 65
          |||||||||||||||||||
Sbjct: 44 tcctcgtcgtctccactgc 62



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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     gctgatggtgccgctcctg 106
              |||||||||||||||||||
Sbjct: 598601 gctgatggtgccgctcctg 598619



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>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the
             5' end of the GPR64 gene for G protein-coupled receptor 64
             and a CpG island, complete sequence
          Length = 191318

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     cacacatcacatcacaaac 22
             |||||||||||||||||||
Sbjct: 21812 cacacatcacatcacaaac 21830



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>emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in linkage group 25,
              complete sequence
          Length = 189510

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      cacacatcacatcacaaac 22
              |||||||||||||||||||
Sbjct: 130117 cacacatcacatcacaaac 130099



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>emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 in linkage group 25,
             complete sequence
          Length = 173989

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    ccgctgctcgagctgctga 92
             |||||||||||||||||||
Sbjct: 96695 ccgctgctcgagctgctga 96713



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>gb|AE012407.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 315
            of 460 of the complete genome
          Length = 12052

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   gcgcggcacgcaatggcgc 44
            |||||||||||||||||||
Sbjct: 5408 gcgcggcacgcaatggcgc 5390



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 93      tggtgccgctcctgctcaccatg 115
               ||||||||| |||||||||||||
Sbjct: 4751115 tggtgccgcccctgctcaccatg 4751137



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>ref|XM_701478.1| PREDICTED: Danio rerio hypothetical protein LOC571020 (LOC571020),
           partial mRNA
          Length = 588

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 74  ccgctgctcgagctgctga 92
           |||||||||||||||||||
Sbjct: 106 ccgctgctcgagctgctga 88



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>gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete sequence
          Length = 36144

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    cctcctcgtcgtctccact 63
             |||||||||||||||||||
Sbjct: 33567 cctcctcgtcgtctccact 33549



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 26      gcgcggcacgcaatggcgc 44
               |||||||||||||||||||
Sbjct: 1428926 gcgcggcacgcaatggcgc 1428944



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 47       tcctcgtcgtctccactgc 65
                |||||||||||||||||||
Sbjct: 40891823 tcctcgtcgtctccactgc 40891841



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 47       tcctcgtcgtctccactgc 65
                |||||||||||||||||||
Sbjct: 24927023 tcctcgtcgtctccactgc 24927005



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 47       tcctcgtcgtctccactgc 65
                |||||||||||||||||||
Sbjct: 21382762 tcctcgtcgtctccactgc 21382780



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 42       cgccctcctcgtcgtctcc 60
                |||||||||||||||||||
Sbjct: 13777952 cgccctcctcgtcgtctcc 13777970



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>gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128 of 195 of the
             complete sequence
          Length = 13507

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    gctgatggtgccgctcctg 106
             |||||||||||||||||||
Sbjct: 10587 gctgatggtgccgctcctg 10569



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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506E04
          Length = 139934

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     tcctcgtcgtctccactgc 65
              |||||||||||||||||||
Sbjct: 103929 tcctcgtcgtctccactgc 103947



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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0496H05
          Length = 147817

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     tcctcgtcgtctccactgc 65
              |||||||||||||||||||
Sbjct: 104700 tcctcgtcgtctccactgc 104718



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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423A12
          Length = 178649

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    tcctcgtcgtctccactgc 65
             |||||||||||||||||||
Sbjct: 20248 tcctcgtcgtctccactgc 20266



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>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1146B04
          Length = 145186

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     cgccctcctcgtcgtctcc 60
              |||||||||||||||||||
Sbjct: 116280 cgccctcctcgtcgtctcc 116298



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>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence
          Length = 109999

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     gcacacatcacatcacaaa 21
             |||||||||||||||||||
Sbjct: 55334 gcacacatcacatcacaaa 55352



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 93      tggtgccgctcctgctcaccatg 115
               ||||||||||||||| |||||||
Sbjct: 2571284 tggtgccgctcctgcgcaccatg 2571262



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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     gctgatggtgccgctcctg 106
              |||||||||||||||||||
Sbjct: 620098 gctgatggtgccgctcctg 620116



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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     tcctcgtcgtctccactgc 65
              |||||||||||||||||||
Sbjct: 150143 tcctcgtcgtctccactgc 150125



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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0440D10
          Length = 144340

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    cgccctcctcgtcgtctcc 60
             |||||||||||||||||||
Sbjct: 15355 cgccctcctcgtcgtctcc 15373



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>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468H06
          Length = 155031

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    tcctcgtcgtctccactgc 65
             |||||||||||||||||||
Sbjct: 24148 tcctcgtcgtctccactgc 24166



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>dbj|AK069585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M24, full
           insert sequence
          Length = 3249

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 42  cgccctcctcgtcgtctcc 60
           |||||||||||||||||||
Sbjct: 113 cgccctcctcgtcgtctcc 131



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 78      tgctcgagctgctgatggt 96
               |||||||||||||||||||
Sbjct: 3709105 tgctcgagctgctgatggt 3709087



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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     gctgatggtgccgctcctg 106
              |||||||||||||||||||
Sbjct: 616395 gctgatggtgccgctcctg 616413



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 82      cgagctgctgatggtgccg 100
               |||||||||||||||||||
Sbjct: 2467588 cgagctgctgatggtgccg 2467570



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>dbj|AB025225.1| Streptomyces griseus gene for AfsR-g, complete cds
          Length = 6221

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 76   gctgctcgagctgctgatggtgccgct 102
            ||||| |||||||||||||||| ||||
Sbjct: 2832 gctgcgcgagctgctgatggtggcgct 2858


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 793,305
Number of Sequences: 3902068
Number of extensions: 793305
Number of successful extensions: 70599
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69627
Number of HSP's gapped (non-prelim): 972
length of query: 115
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 94
effective length of database: 17,151,101,840
effective search space: 1612203572960
effective search space used: 1612203572960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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