>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0036C12, complete sequence
          Length = 145517

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                         
Query: 402   cggcgatcatgtgcagcccgccgtgcttcggccacgtgagcatgatgatgagctgcgtca 461
             |||||| |||||||||| ||||||||||||| ||  ||| |||||||||| | ||||| |
Sbjct: 58681 cggcgaccatgtgcagcgcgccgtgcttcgggcagatgaccatgatgatggggtgcgtga 58740

                                                                         
Query: 462   acgccatcttcggcaacttcgtgagctacaaccccggcctcatgcagggcgtccaggccg 521
             ||| |||||||||||||||||   |||||| ||| |||||||||||||| ||||||||||
Sbjct: 58741 acggcatcttcggcaacttcgccggctacagcccgggcctcatgcagggagtccaggccg 58800

                                              
Query: 522   tcttccagatgtcctgcggcaacgtcaatggcc 554
             ||||||||||| |||||||||||||||||||||
Sbjct: 58801 tcttccagatggcctgcggcaacgtcaatggcc 58833



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 235   tggtgcagtggtaccagggacgcaggattcagtccagattgtggcacaagctgctctctg 294
             ||||||||| || |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct: 57448 tggtgcagtagttccagggacacaggatgcaatccagattgtggcacaagctgctctctg 57507

                           
Query: 295   cttcgacaacagac 308
             ||| ||||| ||||
Sbjct: 57508 ctttgacaatagac 57521

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                            
Query: 402      cggcgatcatgtgcagcccgccgtgcttcggccacgtgagcatgatgatgagctgcgtca 461
                |||||| |||||||||| ||||||||||||| ||  ||| |||||||||| | ||||| |
Sbjct: 16734571 cggcgaccatgtgcagcgcgccgtgcttcgggcagatgaccatgatgatggggtgcgtga 16734630

                                                                            
Query: 462      acgccatcttcggcaacttcgtgagctacaaccccggcctcatgcagggcgtccaggccg 521
                ||| |||||||||||||||||   |||||| ||| |||||||||||||| ||||||||||
Sbjct: 16734631 acggcatcttcggcaacttcgccggctacagcccgggcctcatgcagggagtccaggccg 16734690

                                                 
Query: 522      tcttccagatgtcctgcggcaacgtcaatggcc 554
                ||||||||||| |||||||||||||||||||||
Sbjct: 16734691 tcttccagatggcctgcggcaacgtcaatggcc 16734723



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 235      tggtgcagtggtaccagggacgcaggattcagtccagattgtggcacaagctgctctctg 294
                ||||||||| || |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct: 16733338 tggtgcagtagttccagggacacaggatgcaatccagattgtggcacaagctgctctctg 16733397

                              
Query: 295      cttcgacaacagac 308
                ||| ||||| ||||
Sbjct: 16733398 ctttgacaatagac 16733411

>gb|S37121.1| VPI [foot and mouth disease virus FMDV, type Asia 1 63/72, Genomic,
           897 nt]
          Length = 897

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 344 aactccagcggcaccggcgcgggcatgccg 373
           ||||||||||| | ||||||||||||||||
Sbjct: 231 aactccagcgggatcggcgcgggcatgccg 260

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 385     cggcagcgccgcgtcgacggcgatc 409
               |||| ||||||||||||||||||||
Sbjct: 1130528 cggcggcgccgcgtcgacggcgatc 1130552



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 360     gcgcgggcatgccgccgcct 379
               ||||||||||||||||||||
Sbjct: 3279359 gcgcgggcatgccgccgcct 3279378

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 385     cggcagcgccgcgtcgacggcgatc 409
               |||| ||||||||||||||||||||
Sbjct: 2069529 cggcggcgccgcgtcgacggcgatc 2069505



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gcgcgggcatgccgccgcct 379
              ||||||||||||||||||||
Sbjct: 737760 gcgcgggcatgccgccgcct 737779

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 460     caacgccatcttcggcaacttcgtg 484
               ||||||||||||||||| |||||||
Sbjct: 2391115 caacgccatcttcggcagcttcgtg 2391091

>gb|AC115891.7| Mus musculus chromosome 10, clone RP24-421G4, complete sequence
          Length = 166946

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    gttgccatggcttccttcaag 109
             |||||||||||||||||||||
Sbjct: 63265 gttgccatggcttccttcaag 63245

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 385     cggcagcgccgcgtcgacggcgatc 409
               |||| ||||||||||||||||||||
Sbjct: 2306599 cggcggcgccgcgtcgacggcgatc 2306623



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gcgcgggcatgccgccgcct 379
              ||||||||||||||||||||
Sbjct: 546457 gcgcgggcatgccgccgcct 546476

>gb|AC115034.22| Mus musculus chromosome 10, clone RP24-270I10, complete sequence
          Length = 195908

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     gttgccatggcttccttcaag 109
              |||||||||||||||||||||
Sbjct: 190576 gttgccatggcttccttcaag 190556

>ref|XM_416095.1| PREDICTED: Gallus gallus similar to Protein-tyrosine phosphatase beta
            precursor (R-PTP-beta) (LOC417853), mRNA
          Length = 11796

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  cacaagctgctctctgcttc 298
            ||||||||||||||||||||
Sbjct: 4800 cacaagctgctctctgcttc 4781

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 390     gcgccgcgtcgacggcgatc 409
               ||||||||||||||||||||
Sbjct: 2295360 gcgccgcgtcgacggcgatc 2295379

>gb|AC133099.3| Mus musculus BAC clone RP23-90K8 from chromosome 19, complete sequence
          Length = 224638

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caggattcagtccagattgt 276
              ||||||||||||||||||||
Sbjct: 196228 caggattcagtccagattgt 196209

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    gcgccgcgtcgacggcgatc 409
              ||||||||||||||||||||
Sbjct: 456854 gcgccgcgtcgacggcgatc 456873

>gb|AF418189.1|AF418189 Desulfonatronum lacustre DSM 10312 dissimilatory sulfite reductase
            alpha subunit (dsrA) and dissimilatory sulfite reductase
            beta subunit (dsrB) genes, partial cds
          Length = 1905

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 351  gcggcaccggcgcgggcatg 370
            ||||||||||||||||||||
Sbjct: 1520 gcggcaccggcgcgggcatg 1539

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 373    gccgcctgctcccggcagcgccgc 396
              |||||| |||||||||||||||||
Sbjct: 614052 gccgcccgctcccggcagcgccgc 614029

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 390     gcgccgcgtcgacggcgatc 409
               ||||||||||||||||||||
Sbjct: 1531716 gcgccgcgtcgacggcgatc 1531697

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 457     cgtcaacgccatcttcggca 476
               ||||||||||||||||||||
Sbjct: 2981837 cgtcaacgccatcttcggca 2981856

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     gcaccggcgcgggcatgccg 373
               ||||||||||||||||||||
Sbjct: 1840389 gcaccggcgcgggcatgccg 1840370

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     ccggcagcgccgcgtcgacg 403
               ||||||||||||||||||||
Sbjct: 1753098 ccggcagcgccgcgtcgacg 1753117

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     ccggcagcgccgcgtcgacg 403
               ||||||||||||||||||||
Sbjct: 2188618 ccggcagcgccgcgtcgacg 2188637

>gb|L25841.1|RHBFTOXIDA Bradyrhizobium japonicum fourth terminal oxidase, complete cds
          Length = 2001

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  cgtcaacgccatcttcggca 476
            ||||||||||||||||||||
Sbjct: 1026 cgtcaacgccatcttcggca 1045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,461,213
Number of Sequences: 3902068
Number of extensions: 3461213
Number of successful extensions: 74154
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72629
Number of HSP's gapped (non-prelim): 1525
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)