ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 187 aacgaggcgctcaagaagggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 246 ||||||||| ||||| ||||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 4475539 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 4475480 Query: 247 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 306 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 4475479 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 4475420 Query: 307 gtcgtagaggccgccgtc 324 ||||| |||||| ||||| Sbjct: 4475419 gtcgtcgaggccaccgtc 4475402 Score = 69.9 bits (35), Expect = 9e-09 Identities = 119/147 (80%) Strand = Plus / Minus Query: 402 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtacaagtgcgg 461 ||||||||| | |||||| || || || |||||| | |||||| |||||||| |||||| Sbjct: 4475321 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 4475262 Query: 462 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 521 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 4475261 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 4475202 Query: 522 cttcctctccacgtgggccagcgcggt 548 |||| || || ||||||| | |||||| Sbjct: 4475201 cttcttcaccgcgtgggcgaccgcggt 4475175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 187 aacgaggcgctcaagaagggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 246 ||||||||| ||||| ||||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 4475654 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 4475595 Query: 247 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 306 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 4475594 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 4475535 Query: 307 gtcgtagaggccgccgtc 324 ||||| |||||| ||||| Sbjct: 4475534 gtcgtcgaggccaccgtc 4475517 Score = 69.9 bits (35), Expect = 9e-09 Identities = 119/147 (80%) Strand = Plus / Minus Query: 402 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtacaagtgcgg 461 ||||||||| | |||||| || || || |||||| | |||||| |||||||| |||||| Sbjct: 4475436 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 4475377 Query: 462 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 521 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 4475376 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 4475317 Query: 522 cttcctctccacgtgggccagcgcggt 548 |||| || || ||||||| | |||||| Sbjct: 4475316 cttcttcaccgcgtgggcgaccgcggt 4475290
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 187 aacgaggcgctcaagaagggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 246 ||||||||| ||||| ||||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 80831 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 80772 Query: 247 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 306 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 80771 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 80712 Query: 307 gtcgtagaggccgccgtc 324 ||||| |||||| ||||| Sbjct: 80711 gtcgtcgaggccaccgtc 80694 Score = 69.9 bits (35), Expect = 9e-09 Identities = 119/147 (80%) Strand = Plus / Minus Query: 402 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtacaagtgcgg 461 ||||||||| | |||||| || || || |||||| | |||||| |||||||| |||||| Sbjct: 80613 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 80554 Query: 462 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 521 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 80553 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 80494 Query: 522 cttcctctccacgtgggccagcgcggt 548 |||| || || ||||||| | |||||| Sbjct: 80493 cttcttcaccgcgtgggcgaccgcggt 80467
>dbj|AK108939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B05, full insert sequence Length = 1965 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Plus Query: 187 aacgaggcgctcaagaagggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 246 ||||||||| ||||| ||||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 182 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 241 Query: 247 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 306 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 242 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 301 Query: 307 gtcgtagaggccgccgtc 324 ||||| |||||| ||||| Sbjct: 302 gtcgtcgaggccaccgtc 319 Score = 69.9 bits (35), Expect = 9e-09 Identities = 119/147 (80%) Strand = Plus / Plus Query: 402 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtacaagtgcgg 461 ||||||||| | |||||| || || || |||||| | |||||| |||||||| |||||| Sbjct: 400 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 459 Query: 462 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 521 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 460 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 519 Query: 522 cttcctctccacgtgggccagcgcggt 548 |||| || || ||||||| | |||||| Sbjct: 520 cttcttcaccgcgtgggcgaccgcggt 546
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 96 cggcgagatggtcccgctgaccctcttcgaccgcgcc 132 |||||||||||||||||| ||| |||||||||||||| Sbjct: 121215 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 121179 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 agccaccaccaggccgccgacggc 507 ||||||||||||| |||||||||| Sbjct: 120431 agccaccaccaggtcgccgacggc 120408
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 96 cggcgagatggtcccgctgaccctcttcgaccgcgcc 132 |||||||||||||||||| ||| |||||||||||||| Sbjct: 11667280 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 11667244 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 agccaccaccaggccgccgacggc 507 ||||||||||||| |||||||||| Sbjct: 11666496 agccaccaccaggtcgccgacggc 11666473
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 96 cggcgagatggtcccgctgaccctcttcgaccgcgcc 132 |||||||||||||||||| ||| |||||||||||||| Sbjct: 11673720 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 11673684 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 agccaccaccaggccgccgacggc 507 ||||||||||||| |||||||||| Sbjct: 11672936 agccaccaccaggtcgccgacggc 11672913
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 54.0 bits (27), Expect = 5e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 79 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 138 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 122859 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 122918 Query: 139 gacatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctc 198 ||| ||||||||||||| | ||| |||| ||||||| | ||| ||| ||||||| || Sbjct: 122919 gacgtcttcgtccccatggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtc 122978 Query: 199 aagaagggcctgcgcagggccgtcgcggtgtaccc 233 ||| | ||||| || | ||||||||| | |||||| Sbjct: 122979 aaggaaggcctccggatggccgtcgccgcgtaccc 123013 Score = 50.1 bits (25), Expect = 0.008 Identities = 106/133 (79%) Strand = Plus / Minus Query: 416 tcggggcggctcttctgcagatcaagctcaaccggtacaagtgcggcggcctcgtgatcg 475 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 88904 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 88845 Query: 476 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 535 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 88844 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 88785 Query: 536 gggccagcgcggt 548 |||| || ||||| Sbjct: 88784 gggcgagggcggt 88772 Score = 48.1 bits (24), Expect = 0.033 Identities = 54/64 (84%) Strand = Plus / Minus Query: 92 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 151 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 125168 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 125109 Query: 152 ccat 155 |||| Sbjct: 125108 ccat 125105 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 283 cacgtcaacaacgagggcgtgct 305 ||||||||||||||||||||||| Sbjct: 89019 cacgtcaacaacgagggcgtgct 88997 Score = 44.1 bits (22), Expect = 0.52 Identities = 142/182 (78%) Strand = Plus / Minus Query: 80 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 139 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 89234 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 89175 Query: 140 acatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctca 199 || ||||||||||| | | ||| |||| ||||||| | ||| ||| ||||||| ||| Sbjct: 89174 acgtcttcgtccccttggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtca 89115 Query: 200 agaagggcctgcgcagggccgtcgcggtgtacccgcacctggccggacgcttcgccgtcg 259 || ||||||| || ||||||||| | |||||| | | || | || ||| ||||||||| Sbjct: 89114 aggagggcctccgggtggccgtcgccgcgtaccctctcgtgtctggccgcatcgccgtcg 89055 Query: 260 ac 261 || Sbjct: 89054 ac 89053
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 79 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 138 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 24645957 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 24646016 Query: 139 gacatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctc 198 ||| ||||||||||||| | ||| |||| ||||||| | ||| ||| ||||||| || Sbjct: 24646017 gacgtcttcgtccccatggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtc 24646076 Query: 199 aagaagggcctgcgcagggccgtcgcggtgtaccc 233 ||| | ||||| || | ||||||||| | |||||| Sbjct: 24646077 aaggaaggcctccggatggccgtcgccgcgtaccc 24646111 Score = 50.1 bits (25), Expect = 0.008 Identities = 106/133 (79%) Strand = Plus / Minus Query: 416 tcggggcggctcttctgcagatcaagctcaaccggtacaagtgcggcggcctcgtgatcg 475 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 24612002 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 24611943 Query: 476 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 535 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 24611942 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 24611883 Query: 536 gggccagcgcggt 548 |||| || ||||| Sbjct: 24611882 gggcgagggcggt 24611870 Score = 48.1 bits (24), Expect = 0.033 Identities = 54/64 (84%) Strand = Plus / Minus Query: 92 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 151 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 24648266 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 24648207 Query: 152 ccat 155 |||| Sbjct: 24648206 ccat 24648203 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 283 cacgtcaacaacgagggcgtgct 305 ||||||||||||||||||||||| Sbjct: 24612117 cacgtcaacaacgagggcgtgct 24612095 Score = 44.1 bits (22), Expect = 0.52 Identities = 142/182 (78%) Strand = Plus / Minus Query: 80 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 139 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 24612332 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 24612273 Query: 140 acatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctca 199 || ||||||||||| | | ||| |||| ||||||| | ||| ||| ||||||| ||| Sbjct: 24612272 acgtcttcgtccccttggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtca 24612213 Query: 200 agaagggcctgcgcagggccgtcgcggtgtacccgcacctggccggacgcttcgccgtcg 259 || ||||||| || ||||||||| | |||||| | | || | || ||| ||||||||| Sbjct: 24612212 aggagggcctccgggtggccgtcgccgcgtaccctctcgtgtctggccgcatcgccgtcg 24612153 Query: 260 ac 261 || Sbjct: 24612152 ac 24612151
>dbj|AK061327.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H12, full insert sequence Length = 1584 Score = 54.0 bits (27), Expect = 5e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 79 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 138 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 85 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 144 Query: 139 gacatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctc 198 ||| ||||||||||||| | ||| |||| ||||||| | ||| ||| ||||||| || Sbjct: 145 gacgtcttcgtccccatggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtc 204 Query: 199 aagaagggcctgcgcagggccgtcgcggtgtaccc 233 ||| | ||||| || | ||||||||| | |||||| Sbjct: 205 aaggaaggcctccggatggccgtcgccgcgtaccc 239
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 79 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 138 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 24957627 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 24957686 Query: 139 gacatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctc 198 ||| ||||||||||||| | ||| |||| ||||||| | ||| ||| ||||||| || Sbjct: 24957687 gacgtcttcgtccccatggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtc 24957746 Query: 199 aagaagggcctgcgcagggccgtcgcggtgtaccc 233 ||| | ||||| || | ||||||||| | |||||| Sbjct: 24957747 aaggaaggcctccggatggccgtcgccgcgtaccc 24957781 Score = 50.1 bits (25), Expect = 0.008 Identities = 106/133 (79%) Strand = Plus / Minus Query: 416 tcggggcggctcttctgcagatcaagctcaaccggtacaagtgcggcggcctcgtgatcg 475 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 24923672 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 24923613 Query: 476 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 535 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 24923612 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 24923553 Query: 536 gggccagcgcggt 548 |||| || ||||| Sbjct: 24923552 gggcgagggcggt 24923540 Score = 48.1 bits (24), Expect = 0.033 Identities = 54/64 (84%) Strand = Plus / Minus Query: 92 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 151 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 24959936 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 24959877 Query: 152 ccat 155 |||| Sbjct: 24959876 ccat 24959873 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 283 cacgtcaacaacgagggcgtgct 305 ||||||||||||||||||||||| Sbjct: 24923787 cacgtcaacaacgagggcgtgct 24923765 Score = 44.1 bits (22), Expect = 0.52 Identities = 142/182 (78%) Strand = Plus / Minus Query: 80 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 139 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 24924002 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 24923943 Query: 140 acatcttcgtccccatcatcctcgtctacgccgcgccgactccgcccaacgaggcgctca 199 || ||||||||||| | | ||| |||| ||||||| | ||| ||| ||||||| ||| Sbjct: 24923942 acgtcttcgtccccttggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtca 24923883 Query: 200 agaagggcctgcgcagggccgtcgcggtgtacccgcacctggccggacgcttcgccgtcg 259 || ||||||| || ||||||||| | |||||| | | || | || ||| ||||||||| Sbjct: 24923882 aggagggcctccgggtggccgtcgccgcgtaccctctcgtgtctggccgcatcgccgtcg 24923823 Query: 260 ac 261 || Sbjct: 24923822 ac 24923821
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 487 caccaccaggccgccgacggctactccgttagcaccttc 525 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 1713200 caccaccaggccgccgacgggttctccatgagcaccttc 1713162
>dbj|AK109609.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F12, full insert sequence Length = 1530 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 487 caccaccaggccgccgacggctactccgttagcaccttc 525 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 485 caccaccaggccgccgacgggttctccatgagcaccttc 523
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 487 caccaccaggccgccgacggctactccgttagcaccttc 525 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 1713176 caccaccaggccgccgacgggttctccatgagcaccttc 1713138
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 487 caccaccaggccgccgacggctactccgttagcaccttc 525 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 127284 caccaccaggccgccgacgggttctccatgagcaccttc 127322
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 487 caccaccaggccgccgacggctactccgttagcaccttc 525 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 53721 caccaccaggccgccgacgggttctccatgagcaccttc 53759
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 tcaacaacgagggcgtgcttgt 308 |||||||||||||||||||||| Sbjct: 1131766 tcaacaacgagggcgtgcttgt 1131787 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 tcaacaacgagggcgtgcttgt 308 |||||||||||||||||||||| Sbjct: 1128231 tcaacaacgagggcgtgcttgt 1128210
>gb|AC159450.1| Trypanosoma brucei chromosome 7 clone RPCI93-5F10, complete sequence Length = 154291 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 tcaacaacgagggcgtgcttgt 308 |||||||||||||||||||||| Sbjct: 42259 tcaacaacgagggcgtgcttgt 42280 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 tcaacaacgagggcgtgcttgt 308 |||||||||||||||||||||| Sbjct: 38724 tcaacaacgagggcgtgcttgt 38703
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 486 ccaccaccaggccgccgacggc 507 |||||||||||||||||||||| Sbjct: 3053836 ccaccaccaggccgccgacggc 3053815
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gccaccaccaggccgccgacg 505 ||||||||||||||||||||| Sbjct: 3098604 gccaccaccaggccgccgacg 3098584
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 gcagccaccaccaggccgccg 502 ||||||||||||||||||||| Sbjct: 3641272 gcagccaccaccaggccgccg 3641252
>dbj|AB097436.1| Oryza sativa (japonica cultivar-group) transposon AnacA9 DNA, complete sequence Length = 1758 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggcgagcgtggtgaccgacgg 356 ||||||||||||||||||||| Sbjct: 1256 ggcgagcgtggtgaccgacgg 1236
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggcgagcgtggtgaccgacgg 356 ||||||||||||||||||||| Sbjct: 39755584 ggcgagcgtggtgaccgacgg 39755564 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 gggccagcgcggtacggcaa 555 |||||||||||||||||||| Sbjct: 38662557 gggccagcgcggtacggcaa 38662538
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggcgagcgtggtgaccgacgg 356 ||||||||||||||||||||| Sbjct: 106483 ggcgagcgtggtgaccgacgg 106463
>ref|XM_533899.2| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 1 (LOC476694), mRNA Length = 1896 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctgcagtgccgccgccggaggaga 412 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>ref|XM_862227.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 5 (LOC476694), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctgcagtgccgccgccggaggaga 412 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>ref|XM_862217.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 4 (LOC476694), mRNA Length = 1850 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctgcagtgccgccgccggaggaga 412 |||||| ||||||||||||||||| Sbjct: 8 ctgcagagccgccgccggaggaga 31
>ref|XM_862209.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 3 (LOC476694), mRNA Length = 1908 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctgcagtgccgccgccggaggaga 412 |||||| ||||||||||||||||| Sbjct: 3 ctgcagagccgccgccggaggaga 26
>ref|XM_848300.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 2 (LOC476694), mRNA Length = 1908 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctgcagtgccgccgccggaggaga 412 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>ref|XM_387393.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07217.1) partial mRNA Length = 1533 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 gcccaacgaggcgctcaagaaggg 206 |||||||||||| ||||||||||| Sbjct: 1389 gcccaacgaggccctcaagaaggg 1412
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 gcggcggcctcgtgatcggc 477 |||||||||||||||||||| Sbjct: 2901767 gcggcggcctcgtgatcggc 2901748
>ref|XM_501760.1| Yarrowia lipolytica CLIB122, YALI0C12430g predicted mRNA Length = 1884 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 ggctcttctgcagatcaagctcaa 446 ||||||| |||||||||||||||| Sbjct: 1324 ggctcttttgcagatcaagctcaa 1301
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccaacgaggcgctcaagaag 204 |||||||||||||||||||| Sbjct: 335546 ccaacgaggcgctcaagaag 335565
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccaacgaggcgctcaagaag 204 |||||||||||||||||||| Sbjct: 243380 ccaacgaggcgctcaagaag 243399
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccaacgaggcgctcaagaag 204 |||||||||||||||||||| Sbjct: 110656 ccaacgaggcgctcaagaag 110675
>gb|AC091096.7| Homo sapiens chromosome 8, clone RP11-587H10, complete sequence Length = 207630 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 ccaccttggacatcttcgtcccca 154 ||||||||||||||| |||||||| Sbjct: 161689 ccaccttggacatctacgtcccca 161712
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tcgatctggcgagcgtggtg 348 |||||||||||||||||||| Sbjct: 889346 tcgatctggcgagcgtggtg 889365
>gb|AE011742.1| Xanthomonas axonopodis pv. citri str. 306, section 120 of 469 of the complete genome Length = 12234 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tcgatctggcgagcgtggtg 348 |||||||||||||||||||| Sbjct: 6213 tcgatctggcgagcgtggtg 6232
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gtgccgccgccggaggagat 413 |||||||||||||||||||| Sbjct: 4809810 gtgccgccgccggaggagat 4809829 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gtgccgccgccggaggagat 413 |||||||||||||||||||| Sbjct: 244132 gtgccgccgccggaggagat 244113
>gb|AC022193.5|AC022193 Homo sapiens, clone RP11-23B3, complete sequence Length = 184228 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ccaccttggacatcttcgtcccca 154 ||||||||||||||| |||||||| Sbjct: 130356 ccaccttggacatctacgtcccca 130333
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggcgagcagcaccatgctga 64 |||||||||||||||||||| Sbjct: 4240653 ggcgagcagcaccatgctga 4240634
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 gggccagcgcggtacggcaa 555 |||||||||||||||||||| Sbjct: 120530 gggccagcgcggtacggcaa 120511
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcatccacgtcaacaacgag 297 |||||||||||||||||||| Sbjct: 4808786 gcatccacgtcaacaacgag 4808767
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tcgatctggcgagcgtggtg 348 |||||||||||||||||||| Sbjct: 920703 tcgatctggcgagcgtggtg 920722
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 tcgtgatcggcttcagcagc 486 |||||||||||||||||||| Sbjct: 808285 tcgtgatcggcttcagcagc 808304
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gccgccgtccccgtcgatct 335 |||||||||||||||||||| Sbjct: 3122503 gccgccgtccccgtcgatct 3122522
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 ggctcttctgcagatcaagctcaa 446 ||||||| |||||||||||||||| Sbjct: 1738602 ggctcttttgcagatcaagctcaa 1738625
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cgcaccctgtcgccggcgag 102 |||||||||||||||||||| Sbjct: 260221 cgcaccctgtcgccggcgag 260202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,383,610 Number of Sequences: 3902068 Number of extensions: 3383610 Number of successful extensions: 67638 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65324 Number of HSP's gapped (non-prelim): 2311 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
