ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32a11 |
|---|---|
| Clone Library Name | barley_pub |
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein| Length = 612 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 279 EEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREV 413 E++NE+ L+SLLP+ R + +L ET +Y+K L R V Sbjct: 428 EKLNEMFLVLKSLLPSIHR-----VNKASILAETIAYLKELQRRV 467
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein| Length = 610 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 279 EEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREV 413 E++NE+ L+SLLP+ R + +L ET +Y+K L R V Sbjct: 426 EKLNEMFLVLKSLLPSIHR-----VNKASILAETIAYLKELQRRV 465
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = +3 Query: 186 VASLSSRPATQRRLGRKTMSSRRSSRGAISDEEINELISKLQSLLPNSRRRGSSQASTTK 365 + + + +Q + GRK+ RSS EEI++ + + LL +S R S + TT Sbjct: 592 IKGVDCQEVSQEKNGRKSSGVARSSEKCRPREEISDHENNVTILLEDSDLRRSPRVKTTP 651 Query: 366 LLKET 380 L ++T Sbjct: 652 LRRQT 656
>CEP2_HUMAN (Q9BV73) Centrosomal protein 2 (Centrosomal Nek2-associated protein| 1) (C-NAP1) (Centrosome protein 250) (Centrosome-associated protein CEP250) Length = 2442 Score = 31.2 bits (69), Expect = 1.9 Identities = 13/52 (25%), Positives = 29/52 (55%) Frame = +3 Query: 258 SRGAISDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREV 413 S+G + E+ + +++L +LL S+++ K L+ET +++ H E+ Sbjct: 272 SQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTEL 323
>DNAK_PSEAE (Q9HV43) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +2 Query: 197 VIPAGDAAAARKEDDVEQKVVARRHLRRGDQRAHLQAPVSA-PQLSPPRLQPGVDDEAAQ 373 + AGD A A + +E+ + +GD +A ++A ++A Q S P Q ++A Q Sbjct: 550 ITEAGDKATAEDKATIEKALGELEAAVKGDDKAEIEAKMNALSQASTPLAQKMYAEQAQQ 609 Query: 374 GD 379 G+ Sbjct: 610 GE 611
>TFAP4_HUMAN (Q01664) Transcription factor AP-4 (Activating enhancer-binding| protein 4) Length = 338 Score = 30.4 bits (67), Expect = 3.2 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = +3 Query: 183 AVASLSSRPATQRRLGRKTMSSRRSSRGAISDEEINELISKLQSLLPNSRRRGSSQASTT 362 ++A++ P TQR R+ +S + IN L++L+P++ S+A+ Sbjct: 30 SLANIPLTPETQRDQERRIRREIANSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAA-- 87 Query: 363 KLLKETCSYIKSLHRE 410 +L++T YI SL +E Sbjct: 88 -ILQQTAEYIFSLEQE 102
>TTLL5_MOUSE (Q8CHB8) Tubulin--tyrosine ligase-like protein 5| Length = 1328 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = +3 Query: 180 PAVASLSSRPATQRRLGRKTMSSRRSSRGAISDEEINELISKLQ--SLLPNSRRRGSSQA 353 P ++L S+PA+ + + +S+R+S+G+ ++ ++N L S L + +P + GS +A Sbjct: 1234 PNSSTLVSKPASNHKQVLRKPASQRASKGSSAEGQLNGLQSSLNPAAFMPITNSTGSLEA 1293
>SYFB_AQUAE (O67620) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 775 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Frame = +3 Query: 228 GRKTMSSR---RSSRGAISDEEINELISKLQSLL 320 G+K+++ R RS G++ DEE NEL++KL + L Sbjct: 732 GKKSVAVRLVLRSKTGSLKDEEANELVNKLVNYL 765
>SPT_ARATH (Q9FUA4) Protein SPATULA| Length = 373 Score = 30.0 bits (66), Expect = 4.2 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 210 ATQRRLGRKTMSSRRSSRGA----ISDEE----INELISKLQSLLPNSRRRGSSQASTTK 365 A + G + SS + R A +S++ INE + LQSL+PN S++ Sbjct: 180 APSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPN-----SNKTDKAS 234 Query: 366 LLKETCSYIKSLHREV 413 +L E Y+K L +V Sbjct: 235 MLDEAIEYLKQLQLQV 250
>PQQC_PSESM (Q88A82) Pyrroloquinoline-quinone synthase (EC 1.3.3.11) (Coenzyme| PQQ synthesis protein C) (Pyrroloquinoline quinone biosynthesis protein C) Length = 251 Score = 30.0 bits (66), Expect = 4.2 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%) Frame = -1 Query: 532 TCRHFSTYDHERRMLRMISAPA-LLWSMVD 446 T +H++TY+ ++RML ++ +LWSM+D Sbjct: 194 TLQHYTTYEGQQRMLEILQFKLDILWSMLD 223
>DNAK_VIBPR (Q9L7Z1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 29.3 bits (64), Expect = 7.2 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +2 Query: 206 AGDAAAARKEDDVEQKVVARRHLRRGDQRAHLQAPVSAPQLSPPRL----QPGVDDEAAQ 373 AGDA A ++ +E V R+GD + + A V A + +L Q +AAQ Sbjct: 552 AGDALPAEDKEKIEAAVSELEDARKGDDKEAIDAKVQALMTASQKLMEIAQQQAQAQAAQ 611 Query: 374 G 376 G Sbjct: 612 G 612
>LAMB_HIRME (Q25092) Laminin B-chain (Fragment)| Length = 400 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 276 DEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHRE 410 D+E++ L SKL+ L PN GS + + E S + +L E Sbjct: 170 DQELDNLSSKLKDLKPNLASHGSRTGEASVKISELYSRVLNLQSE 214
>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex| subunit psm1) (Chromosome segregation protein smc1) Length = 1233 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +3 Query: 273 SDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREV 413 +D+ + L+ KLQ+L N + S+ S T ++ + S IKSLH V Sbjct: 390 ADKLNSNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESV 436
>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein HFR1)| (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light) Length = 292 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = +3 Query: 246 SRRSSRGAISDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREV 413 +R+ S+ DE+++ + KLQ L+PN + +L +T Y+K+L ++ Sbjct: 137 TRKGSKRRRRDEKMSNKMRKLQQLVPNCHK-----TDKVSVLDKTIEYMKNLQLQL 187
>EP84_HCMVA (P17151) Early phosphoprotein p84| Length = 684 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 204 RPATQRRLGRKTMSSRRSSR--GAISDEEINELISKLQSLLPNSRRRGSS 347 R + ++ + SSRRS R DEE N+ + +L + N RRRG S Sbjct: 607 RNSRRQAASSSSSSSRRSRRRNNRHEDEEDNDPLLRLSQVAGNGRRRGPS 656
>SCPB_STAES (Q7ZAJ3) Segregation and condensation protein B| Length = 180 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +3 Query: 270 ISDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHRE 410 I+ ++ +L+SK S +R GS+ TTK KET +YI+ L +E Sbjct: 30 INLNQLEDLVSKYHSHGLTIQRYGSTYVLTTK--KETSTYIEQLVKE 74
>SCPB_STAEQ (Q5HP56) Segregation and condensation protein B| Length = 180 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +3 Query: 270 ISDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHRE 410 I+ ++ +L+SK S +R GS+ TTK KET +YI+ L +E Sbjct: 30 INLNQLEDLVSKYHSHGLTIQRYGSTYVLTTK--KETSTYIEQLVKE 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,353,804 Number of Sequences: 219361 Number of extensions: 956840 Number of successful extensions: 3315 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3315 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
