>TRBM_CANFA (Q5W7P8) Thrombomodulin precursor (TM) (CD141 antigen)|
          Length = 578

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
 Frame = +1

Query: 88  PLLTSHKTRPAKAPSVDDTIETYMGATGA-LQLLKAVLLAFAWAFDAQQVFISVFTDAEP 264
           PLL     R A A  V  T  T  GA GA  Q L A   A    F  Q    +   +AE 
Sbjct: 177 PLLVD--ARAAAAAGVSVTYSTPFGARGADFQALPAGSSAAVAPFGVQLACAAPRGEAEA 234

Query: 265 RW--------HCT----GADASCSAATASPRAL 327
           RW         C+    G   +CSA+  +PR L
Sbjct: 235 RWGREAPGAWDCSVENGGCQRACSASAGAPRCL 267

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 8    VSSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRRT 157
            V  +   + +  +R+R P      P  RS   +++ R   RRS TPSRR+
Sbjct: 1943 VGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS 1992



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 14   SQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRR 154
            S  + +    +R+R P      P  RS   +++ R   RRS TPSRR
Sbjct: 1952 SPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRR 1998

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 8    VSSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRR 154
            V  +   + +  +R+R P      P  RS   +++ R   RRS TPSRR
Sbjct: 1928 VGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRR 1976

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)|
          Length = 1217

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 11   SSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQG-----RPRHRR 133
            SS  K +  AQKR R   +  ++ PPRS  +TK        P+HR+
Sbjct: 879  SSSQKPSRPAQKRPRPDEDTCSQEPPRSASSTKSSSTDPPAPKHRK 924

>FTSK2_NEIMA (Q9JUK9) DNA translocase ftsK 2|
          Length = 1014

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/94 (25%), Positives = 38/94 (40%)
 Frame = -1

Query: 311 AVAAEQDASAPVQCHRGSASVNTEMNTCCASKAHAKASNTALRSCRAPVAPMYVSMVSST 132
           AV AE   +AP + H G      E  +   S+  + +  TA+R  R  V+        +T
Sbjct: 270 AVKAENARNAPFRRHAGQGKGQAEAKSPDVSQGQSVSDGTAVRDARRRVSVNLKEPNKAT 329

Query: 131 DGALAGLVLWLVRSGAAAVSAIRTVRGRAFVRLP 30
             A A +        +  +   RTV G+  V +P
Sbjct: 330 VSAEARI--------SRLIPESRTVVGKRDVEMP 355

>RUVA_CHLTE (Q8KFR0) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 201

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +1

Query: 25  ASGKRTKARPRTVRMADTAAAPLLTSHKTRPAKAPSVDDTIETYMGATGALQLLKAVLLA 204
           ASGK T   P+ +++ + A A L+T    +PA   ++   +ET  G +   ++++A L+A
Sbjct: 139 ASGK-TAGAPQALQLNEDALAALMTLGFPKPAAQKAISGILETSPGLS-VEEVVRAALIA 196

>ALU8_HUMAN (P39195) Alu subfamily SX sequence contamination warning entry|
          Length = 591

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 151 SRWCHRPTVPWPALFCGLSGAGRRPCQP 68
           S W +R   P PA FC  S  G  PC P
Sbjct: 534 SSWDYRRAPPRPANFCIFSRDGVSPCWP 561

>ALU5_HUMAN (P39192) Alu subfamily SC sequence contamination warning entry|
          Length = 585

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 151 SRWCHRPTVPWPALFCGLSGAGRRPCQP 68
           S W +R   P PA FC  S  G  PC P
Sbjct: 431 SSWDYRRAPPRPANFCIFSRDGVSPCWP 458

>ALU2_HUMAN (P39189) Alu subfamily SB sequence contamination warning entry|
          Length = 587

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 151 SRWCHRPTVPWPALFCGLSGAGRRPCQP 68
           S W +R   P PA FC  S  G  PC P
Sbjct: 531 SSWDYRRPPPRPANFCIFSRDGVSPCXP 558

>IF2_LISIN (Q92C29) Translation initiation factor IF-2|
          Length = 782

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 33  QTHKSAPANRANG*HGRRPAPDKPQNKAGQ 122
           Q +K A AN++   HG +PA +KP N + Q
Sbjct: 96  QANKPATANKS---HGAKPATNKPANTSNQ 122

>STRL_STRGR (P29781) dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)|
           (dTDP-4-keto-L-rhamnose reductase)
           (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose
           synthetase)
          Length = 304

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -1

Query: 365 VTA-GRSHAHAPDGSARGDAVAAEQDASAPVQCHRGSASVNTEMNTCCASKAHAKASNTA 189
           VTA GR H    DG+A   AV AE   +  V C   +A    E     A   + +     
Sbjct: 33  VTALGRGHLDITDGAAVRSAV-AEHRPAVVVNCAAWTAVDEAESEPALAMAVNGEGPRHL 91

Query: 188 LRSCRAPVAPMYVSMVSSTDGALAG 114
            ++CRA  A   V +  STD    G
Sbjct: 92  AQACRAVGA---VLLQLSTDYVFPG 113

>EFG2_RALEJ (Q46PQ4) Elongation factor G 2 (EF-G 2)|
          Length = 701

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 210 REGQQHGLEELQGAGGAHVRLD 145
           R G  HG+EE+ G GG  VR +
Sbjct: 633 RRGMVHGMEEIAGGGGKVVRAE 654

>HLDD_RHILO (Q98I52) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)|
           (ADP-L-glycero-beta-D-manno-heptose-6-epimerase)
           (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep
           6-epimerase) (AGME)
          Length = 316

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 269 HRGSASVNTEMNTCCASKAHAKASNTALRSCRAPVAP-MYVSMVSSTDG 126
           H+G+ S  TE N     + +   S   L +C+AP  P +Y S  S   G
Sbjct: 73  HQGACSTTTEWNGKFMMEVNFAYSKRLLHACQAPRVPFLYASSASVYGG 121

>ALU7_HUMAN (P39194) Alu subfamily SQ sequence contamination warning entry|
          Length = 593

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 151 SRWCHRPTVPWPALFCGLSGAGRRPCQP 68
           S W +R   P PA FC  S  G  PC P
Sbjct: 338 SSWDYRRPPPRPANFCIFSRDGVSPCWP 365

>ADAM2_RAT (Q63202) ADAM 2 precursor (A disintegrin and metalloproteinase|
           domain 2) (Fertilin beta subunit) (PH-30) (PH30)
           (PH30-beta)
          Length = 737

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 106 CGLSGAGRRPCQPFARFAGALLCV 35
           CG++  G + C P  R  G L+C+
Sbjct: 530 CGITPTGYKDCAPNDRMCGKLICI 553

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
 Frame = -1

Query: 362 TAGRSHAHAPDG--SARGDAVAAEQDASAPVQCHRGSASVNTEMNTCCASKAHAKASNTA 189
           +A  +  HA D   SAR  + +A Q AS+       + + +T+      S A A++S +A
Sbjct: 137 SAREAATHAADAADSARAASTSAGQAASSAQSASSSAGTASTKATEASKSAAAAESSKSA 196

Query: 188 LRSCRAPVAPMYVSMVSSTDGALAGLVLWLVRSGAAAVSA 69
             +          +  +S   A         ++  AA SA
Sbjct: 197 AATSAGAAKTSETNASASLQSAATSASTATTKASEAATSA 236

>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister|
           chromatids)
          Length = 1741

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
 Frame = +1

Query: 10  EQPR*ASGKRTKARPRTVRMADTAAAPLLTSHKTRPAKAPSVDDTIETYMGATGALQLLK 189
           EQP  ASGK+ + +P+  +     A P     + R A      D  E Y   T  L + K
Sbjct: 208 EQPSSASGKQKQKKPKEEKKLKPEAPPSRVLGRARKAVNYREVDEDERYPTPTKDLIIPK 267

Query: 190 A------VLLAFAWAFDAQQVFISV---FTDAEPRWHCTGADASCSAATASPRALPSGAW 342
           A      V      A  + + FIS       +EP      +  S SA+T+S   LPS + 
Sbjct: 268 AGRQPAEVAATATLAAASSEAFISSTFGSPGSEPSLPPPTSAPSASASTSS--QLPSASG 325

Query: 343 AWDRP 357
           +   P
Sbjct: 326 SASNP 330

>KTHY_AERPE (Q9YA48) Putative thymidylate kinase (EC 2.7.4.9) (dTMP kinase)|
          Length = 208

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 261 LGVGEHRDEHLLRVEGPREGQQHGLEELQG 172
           L +   R   ++RVEG R G + G+E++QG
Sbjct: 164 LRLARARGVKVIRVEGVRGGVERGIEDVQG 193

>ADAM2_MOUSE (Q60718) ADAM 2 precursor (A disintegrin and metalloproteinase|
           domain 2) (Fertilin beta subunit) (PH-30) (PH30)
           (PH30-beta)
          Length = 735

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 106 CGLSGAGRRPCQPFARFAGALLC 38
           CG+S  G + C P  R  G ++C
Sbjct: 528 CGISAGGYKECPPNDRMCGKIIC 550


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,594,070
Number of Sequences: 219361
Number of extensions: 686744
Number of successful extensions: 2857
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2850
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)