ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart32a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478722.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 270 bits (136), Expect = 3e-69 Identities = 258/298 (86%), Gaps = 3/298 (1%) Strand = Plus / Plus Query: 67 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 126 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 1 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 60 Query: 127 ccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 186 ||||| |||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 61 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 120 Query: 187 aaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtg 246 ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 121 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 180 Query: 247 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 303 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 181 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 240 Query: 304 gccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 | | |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 241 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccg 298
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 270 bits (136), Expect = 3e-69 Identities = 258/298 (86%), Gaps = 3/298 (1%) Strand = Plus / Minus Query: 67 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 126 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 22404950 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 22404891 Query: 127 ccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 186 ||||| |||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 22404890 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 22404831 Query: 187 aaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtg 246 ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 22404830 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 22404771 Query: 247 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 303 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 22404770 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 22404711 Query: 304 gccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 | | |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 22404710 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccg 22404653 Score = 248 bits (125), Expect = 1e-62 Identities = 220/251 (87%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 114 gccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgc 173 |||||| ||||| ||||| |||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 22373398 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 22373457 Query: 174 cctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggt 233 | |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 22373458 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 22373517 Query: 234 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcacc---ggcgccgacgc 290 ||||||||| |||||||| ||||||||||| || |||||||||||| ||||||||| | Sbjct: 22373518 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 22373577 Query: 291 gtcctgctcggctgccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtggga 350 |||||||||| | | | |||| |||||| ||||||||||| ||||||||||||||||||| Sbjct: 22373578 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 22373637 Query: 351 ccgcccggccg 361 ||||||||||| Sbjct: 22373638 ccgcccggccg 22373648 Score = 178 bits (90), Expect = 8e-42 Identities = 186/218 (85%) Strand = Plus / Plus Query: 66 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 125 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 22421037 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 22421096 Query: 126 accgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 185 || ||| |||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 22421097 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 22421156 Query: 186 caaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggt 245 || |||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 22421157 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 22421216 Query: 246 gttcaccgacgccgagcctcggtggcactgcaccggcg 283 |||||| ||||| ||||| |||||||||||||||| Sbjct: 22421217 gttcacggacgcggagcccacatggcactgcaccggcg 22421254 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 320 gcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 ||||||||||| ||||| |||||| ||||||||||||||||| Sbjct: 22421318 gcgcgctcccgcccggcacgtgggagtgggaccgcccggccg 22421359
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 270 bits (136), Expect = 3e-69 Identities = 258/298 (86%), Gaps = 3/298 (1%) Strand = Plus / Minus Query: 67 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 126 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 66017 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 65958 Query: 127 ccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 186 ||||| |||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 65957 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 65898 Query: 187 aaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtg 246 ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 65897 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 65838 Query: 247 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 303 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 65837 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 65778 Query: 304 gccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 | | |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 65777 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccg 65720 Score = 248 bits (125), Expect = 1e-62 Identities = 220/251 (87%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 114 gccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgc 173 |||||| ||||| ||||| |||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 34465 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 34524 Query: 174 cctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggt 233 | |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 34525 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 34584 Query: 234 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcacc---ggcgccgacgc 290 ||||||||| |||||||| ||||||||||| || |||||||||||| ||||||||| | Sbjct: 34585 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 34644 Query: 291 gtcctgctcggctgccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtggga 350 |||||||||| | | | |||| |||||| ||||||||||| ||||||||||||||||||| Sbjct: 34645 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 34704 Query: 351 ccgcccggccg 361 ||||||||||| Sbjct: 34705 ccgcccggccg 34715 Score = 178 bits (90), Expect = 8e-42 Identities = 186/218 (85%) Strand = Plus / Plus Query: 66 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 125 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 82104 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 82163 Query: 126 accgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 185 || ||| |||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 82164 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 82223 Query: 186 caaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggt 245 || |||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 82224 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 82283 Query: 246 gttcaccgacgccgagcctcggtggcactgcaccggcg 283 |||||| ||||| ||||| |||||||||||||||| Sbjct: 82284 gttcacggacgcggagcccacatggcactgcaccggcg 82321 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 320 gcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 ||||||||||| ||||| |||||| ||||||||||||||||| Sbjct: 82385 gcgcgctcccgcccggcacgtgggagtgggaccgcccggccg 82426
>ref|XM_478718.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1599 Score = 248 bits (125), Expect = 1e-62 Identities = 220/251 (87%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 114 gccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgc 173 |||||| ||||| ||||| |||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 51 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 110 Query: 174 cctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggt 233 | |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 111 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 170 Query: 234 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcacc---ggcgccgacgc 290 ||||||||| |||||||| ||||||||||| || |||||||||||| ||||||||| | Sbjct: 171 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 230 Query: 291 gtcctgctcggctgccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtggga 350 |||||||||| | | | |||| |||||| ||||||||||| ||||||||||||||||||| Sbjct: 231 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 290 Query: 351 ccgcccggccg 361 ||||||||||| Sbjct: 291 ccgcccggccg 301
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 248 bits (125), Expect = 1e-62 Identities = 220/251 (87%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 114 gccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgc 173 |||||| ||||| ||||| |||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 178644 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 178703 Query: 174 cctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggt 233 | |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 178704 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 178763 Query: 234 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcacc---ggcgccgacgc 290 ||||||||| |||||||| ||||||||||| || |||||||||||| ||||||||| | Sbjct: 178764 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 178823 Query: 291 gtcctgctcggctgccacggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtggga 350 |||||||||| | | | |||| |||||| ||||||||||| ||||||||||||||||||| Sbjct: 178824 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 178883 Query: 351 ccgcccggccg 361 ||||||||||| Sbjct: 178884 ccgcccggccg 178894
>ref|XM_478725.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1807 Score = 178 bits (90), Expect = 8e-42 Identities = 186/218 (85%) Strand = Plus / Plus Query: 66 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 125 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 58 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 117 Query: 126 accgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 185 || ||| |||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 118 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 177 Query: 186 caaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggt 245 || |||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 178 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 237 Query: 246 gttcaccgacgccgagcctcggtggcactgcaccggcg 283 |||||| ||||| ||||| |||||||||||||||| Sbjct: 238 gttcacggacgcggagcccacatggcactgcaccggcg 275 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 320 gcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 ||||||||||| ||||| |||||| ||||||||||||||||| Sbjct: 339 gcgcgctcccgcccggcacgtgggagtgggaccgcccggccg 380
>dbj|AK072020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104C21, full insert sequence Length = 1807 Score = 178 bits (90), Expect = 8e-42 Identities = 186/218 (85%) Strand = Plus / Plus Query: 66 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 125 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 58 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 117 Query: 126 accgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 185 || ||| |||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 118 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 177 Query: 186 caaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctcggt 245 || |||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 178 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 237 Query: 246 gttcaccgacgccgagcctcggtggcactgcaccggcg 283 |||||| ||||| ||||| |||||||||||||||| Sbjct: 238 gttcacggacgcggagcccacatggcactgcaccggcg 275 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 320 gcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 ||||||||||| ||||| |||||| ||||||||||||||||| Sbjct: 339 gcgcgctcccgcccggcacgtgggagtgggaccgcccggccg 380
>ref|NM_183862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 714 Score = 153 bits (77), Expect = 5e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 115 ccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgcc 174 ||||||||||||||||| || | ||| |||||||| |||||| ||||||||||||||| Sbjct: 112 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 171 Query: 175 ctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtg 234 | || || ||||||||| || ||||||||||||| ||||| |||||||||||||||||| Sbjct: 172 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 231 Query: 235 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 283 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 232 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 280 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggcc 360 |||| |||||| ||||||||||| |||| |||||| ||||||||||| |||| Sbjct: 344 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggcc 396
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 153 bits (77), Expect = 5e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 115 ccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgcc 174 ||||||||||||||||| || | ||| |||||||| |||||| ||||||||||||||| Sbjct: 12739865 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 12739924 Query: 175 ctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtg 234 | || || ||||||||| || ||||||||||||| ||||| |||||||||||||||||| Sbjct: 12739925 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 12739984 Query: 235 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 283 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 12739985 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 12740033 Score = 151 bits (76), Expect = 2e-33 Identities = 124/140 (88%) Strand = Plus / Plus Query: 144 catcgagacgtacatgggcgccaccggcgccctgcagctcctcaaggccgtgttgctggc 203 ||||||| ||||||| |||||||||||||||| ||||| ||||||||| || ||||||| Sbjct: 12741465 catcgaggcgtacatcggcgccaccggcgcccgccagcttctcaaggccatgctgctggc 12741524 Query: 204 cttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtgttcaccgacgccgagcc 263 |||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct: 12741525 cttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtgttcacggacgcggagcc 12741584 Query: 264 tcggtggcactgcaccggcg 283 | |||||||||||||||| Sbjct: 12741585 gccatggcactgcaccggcg 12741604 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 313 tcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 |||||| ||||||||||| | ||| |||||| ||||||||||||||||| Sbjct: 12741673 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccg 12741721 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggcc 360 |||| |||||| ||||||||||| |||| |||||| ||||||||||| |||| Sbjct: 12740097 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggcc 12740149
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 153 bits (77), Expect = 5e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 115 ccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgcc 174 ||||||||||||||||| || | ||| |||||||| |||||| ||||||||||||||| Sbjct: 20264 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 20323 Query: 175 ctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtg 234 | || || ||||||||| || ||||||||||||| ||||| |||||||||||||||||| Sbjct: 20324 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 20383 Query: 235 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 283 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 20384 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 20432 Score = 151 bits (76), Expect = 2e-33 Identities = 124/140 (88%) Strand = Plus / Plus Query: 144 catcgagacgtacatgggcgccaccggcgccctgcagctcctcaaggccgtgttgctggc 203 ||||||| ||||||| |||||||||||||||| ||||| ||||||||| || ||||||| Sbjct: 21864 catcgaggcgtacatcggcgccaccggcgcccgccagcttctcaaggccatgctgctggc 21923 Query: 204 cttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtgttcaccgacgccgagcc 263 |||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct: 21924 cttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtgttcacggacgcggagcc 21983 Query: 264 tcggtggcactgcaccggcg 283 | |||||||||||||||| Sbjct: 21984 gccatggcactgcaccggcg 22003 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 313 tcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 |||||| ||||||||||| | ||| |||||| ||||||||||||||||| Sbjct: 22072 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccg 22120 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggcc 360 |||| |||||| ||||||||||| |||| |||||| ||||||||||| |||| Sbjct: 20496 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggcc 20548
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 153 bits (77), Expect = 5e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 115 ccggccaaggcaccgtcggtcgatgacaccatcgagacgtacatgggcgccaccggcgcc 174 ||||||||||||||||| || | ||| |||||||| |||||| ||||||||||||||| Sbjct: 106894 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 106953 Query: 175 ctgcagctcctcaaggccgtgttgctggccttcgcgtgggccttcgacgcgcagcaggtg 234 | || || ||||||||| || ||||||||||||| ||||| |||||||||||||||||| Sbjct: 106954 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 107013 Query: 235 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 283 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 107014 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 107062 Score = 151 bits (76), Expect = 2e-33 Identities = 124/140 (88%) Strand = Plus / Plus Query: 144 catcgagacgtacatgggcgccaccggcgccctgcagctcctcaaggccgtgttgctggc 203 ||||||| ||||||| |||||||||||||||| ||||| ||||||||| || ||||||| Sbjct: 108494 catcgaggcgtacatcggcgccaccggcgcccgccagcttctcaaggccatgctgctggc 108553 Query: 204 cttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtgttcaccgacgccgagcc 263 |||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct: 108554 cttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtgttcacggacgcggagcc 108613 Query: 264 tcggtggcactgcaccggcg 283 | |||||||||||||||| Sbjct: 108614 gccatggcactgcaccggcg 108633 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 313 tcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 |||||| ||||||||||| | ||| |||||| ||||||||||||||||| Sbjct: 108702 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccg 108750 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggcc 360 |||| |||||| ||||||||||| |||| |||||| ||||||||||| |||| Sbjct: 107126 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggcc 107178
>ref|NM_183863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1626 Score = 151 bits (76), Expect = 2e-33 Identities = 124/140 (88%) Strand = Plus / Plus Query: 144 catcgagacgtacatgggcgccaccggcgccctgcagctcctcaaggccgtgttgctggc 203 ||||||| ||||||| |||||||||||||||| ||||| ||||||||| || ||||||| Sbjct: 69 catcgaggcgtacatcggcgccaccggcgcccgccagcttctcaaggccatgctgctggc 128 Query: 204 cttcgcgtgggccttcgacgcgcagcaggtgttcatctcggtgttcaccgacgccgagcc 263 |||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct: 129 cttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtgttcacggacgcggagcc 188 Query: 264 tcggtggcactgcaccggcg 283 | |||||||||||||||| Sbjct: 189 gccatggcactgcaccggcg 208 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 313 tcgccgcgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccg 361 |||||| ||||||||||| | ||| |||||| ||||||||||||||||| Sbjct: 277 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccg 325
>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence Length = 199923 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 cgccgcgcgcgctcccgtccgg 335 |||||||||||||||||||||| Sbjct: 147455 cgccgcgcgcgctcccgtccgg 147476
>dbj|AK081176.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930096L08 product:weakly similar to tumor cell suppression protein HTS1 (fragment) [Homo sapiens], full insert sequence Length = 4435 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 cgccgcgcgcgctcccgtccgg 335 |||||||||||||||||||||| Sbjct: 111 cgccgcgcgcgctcccgtccgg 90
>dbj|AK048041.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130031G22 product:similar to KIAA1277 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 3889 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 cgccgcgcgcgctcccgtccgg 335 |||||||||||||||||||||| Sbjct: 94 cgccgcgcgcgctcccgtccgg 73
>ref|NM_172477.1| Mus musculus DENN/MADD domain containing 2A (Dennd2a), mRNA Length = 4435 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 cgccgcgcgcgctcccgtccgg 335 |||||||||||||||||||||| Sbjct: 111 cgccgcgcgcgctcccgtccgg 90
>dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynthetic gene cluster, complete cds Length = 27448 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 atctcggtgttcaccgacgcc 258 ||||||||||||||||||||| Sbjct: 17527 atctcggtgttcaccgacgcc 17547
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 cgtccggcgcgtgggcgtggg 349 ||||||||||||||||||||| Sbjct: 11546842 cgtccggcgcgtgggcgtggg 11546862
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cggtgttcaccgacgccgagc 262 ||||||||||||||||||||| Sbjct: 940397 cggtgttcaccgacgccgagc 940377
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 cgtccggcgcgtgggcgtggg 349 ||||||||||||||||||||| Sbjct: 116085 cgtccggcgcgtgggcgtggg 116105
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414E10 Length = 141760 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 cgtccggcgcgtgggcgtggg 349 ||||||||||||||||||||| Sbjct: 24728 cgtccggcgcgtgggcgtggg 24748
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cacggccgccgccccgctcc 94 |||||||||||||||||||| Sbjct: 2362699 cacggccgccgccccgctcc 2362718
>ref|NM_187740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 1747 gcgccgacgcgtcctgctcg 1728
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gccacggcatcgccgcgcgcgctc 327 |||||||| ||||||||||||||| Sbjct: 2547500 gccacggcctcgccgcgcgcgctc 2547477
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 3496514 gcgccgacgcgtcctgctcg 3496533
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 13861 gcgccgacgcgtcctgctcg 13842
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctc 327 |||||||||||||||||||| Sbjct: 622220 cggcatcgccgcgcgcgctc 622239
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ggtcgatgacaccatcgaga 151 |||||||||||||||||||| Sbjct: 2359852 ggtcgatgacaccatcgaga 2359833
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gccacggcatcgccgcgcgc 323 |||||||||||||||||||| Sbjct: 209640 gccacggcatcgccgcgcgc 209621
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 3496625 gcgccgacgcgtcctgctcg 3496644
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tcccgtccggcgcgtgggcg 345 |||||||||||||||||||| Sbjct: 362729 tcccgtccggcgcgtgggcg 362710
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 14167 gcgccgacgcgtcctgctcg 14186
>emb|BX005320.4| Zebrafish DNA sequence from clone DKEY-27P3, complete sequence Length = 142827 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cgccctgcagctcctcaagg 190 |||||||||||||||||||| Sbjct: 81401 cgccctgcagctcctcaagg 81420
>dbj|AK105752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C01, full insert sequence Length = 2414 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 1169 gcgccgacgcgtcctgctcg 1150
>dbj|AK099829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D06, full insert sequence Length = 2698 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 1411 gcgccgacgcgtcctgctcg 1392
>ref|NM_209169.1| Eremothecium gossypii ADL280Wp (ADL280W), mRNA Length = 2802 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gccacggcatcgccgcgcgc 323 |||||||||||||||||||| Sbjct: 290 gccacggcatcgccgcgcgc 271
>dbj|AK068034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131E13, full insert sequence Length = 2636 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcgccgacgcgtcctgctcg 300 |||||||||||||||||||| Sbjct: 1349 gcgccgacgcgtcctgctcg 1330
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cggcatcgccgcgcgcgctc 327 |||||||||||||||||||| Sbjct: 404744 cggcatcgccgcgcgcgctc 404763
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cttcgcgtgggccttcgacg 223 |||||||||||||||||||| Sbjct: 2324574 cttcgcgtgggccttcgacg 2324555
>gb|L12157.1|SOYIDH Glycine max NADP-specific isocitrate dehydrogenase (idh1) mRNA, 3' end Length = 1560 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gctcggctgccacggcatcg 315 |||||||||||||||||||| Sbjct: 1305 gctcggctgccacggcatcg 1286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,123,832 Number of Sequences: 3902068 Number of extensions: 2123832 Number of successful extensions: 46858 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45482 Number of HSP's gapped (non-prelim): 1365 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
