ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II) 33 0.67
2OPAP_DROME (P23488) Male-specific opa-containing protein precurs... 31 2.0
3CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cycli... 31 2.0
4FTSZ1_RHIME (P30327) Cell division protein ftsZ homolog 1 31 2.6
5FBLN4_MOUSE (Q9WVJ9) EGF-containing fibulin-like extracellular m... 31 2.6
6FBLN4_HUMAN (O95967) EGF-containing fibulin-like extracellular m... 30 3.3
7FBLN4_CRIGR (O55058) EGF-containing fibulin-like extracellular m... 30 3.3
8IF2_PSEPK (Q88DV7) Translation initiation factor IF-2 30 5.7
9HSP1_CYNVA (Q8WP00) Sperm protamine P1 29 7.5
10YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11 29 7.5
11WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 29 9.7
12FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400 29 9.7
13I3MS_BRANA (Q00650) Microspore-specific protein I3 29 9.7
14PRTC1_PORGI (P59916) Collagenase precursor (EC 3.4.-.-) 29 9.7

>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)|
          Length = 518

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 24/60 (40%), Positives = 26/60 (43%)
 Frame = -2

Query: 429 ASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVALRAPLALPASQGVALRAREGE 250
           A PA  A P A   A+ A A    A A P  +PA    A  AP A  A    A  A EGE
Sbjct: 455 APPADGAAPPAEAAAAPADAAAPAAEAAPAEAPAAEATAAEAPPAEAAPAEAAPAAAEGE 514



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>OPAP_DROME (P23488) Male-specific opa-containing protein precursor (Protein|
           dromsopa)
          Length = 83

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 23/55 (41%), Positives = 23/55 (41%)
 Frame = -2

Query: 450 VALQAPLASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVALRAPLALPA 286
           VAL  P   PA    P A      A A    AAA P A PAP      AP A PA
Sbjct: 15  VALARPQEDPANLPAPEAAAAPPAAAAAPPAAAAAPPAPPAPPAA---APQAAPA 66



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>CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent|
           kinase inhibitor p57) (p57KIP2)
          Length = 316

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 438 APLASPAPWAQPNAVVQASGAR-A*QGVAAAHPLASPAPRGVALR--APLALPASQGVAL 268
           AP  +PAP   P+A  Q S  + A QG     PLA     G++ R  A  A  ++ G A+
Sbjct: 205 APAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAASANGAAI 264

Query: 267 RAREGEVV 244
           +   G ++
Sbjct: 265 KKLSGPLI 272



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 22/55 (40%), Positives = 24/55 (43%)
 Frame = -2

Query: 450 VALQAPLASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVALRAPLALPA 286
           V   AP  +PAP A P A   A    A     A  P  +PAP  VA  AP   PA
Sbjct: 153 VLAPAPAPAPAPVAAPVAAPVAVAVLA--PAPAPAPAPAPAPAPVAAPAPAPAPA 205



 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -2

Query: 435 PLASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVALRAPLALPA 286
           P+ +PAP   P  V  A+   A   VA   P  +PAP      AP+A PA
Sbjct: 152 PVLAPAPAPAPAPV--AAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPA 199



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>FTSZ1_RHIME (P30327) Cell division protein ftsZ homolog 1|
          Length = 590

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
 Frame = -2

Query: 450 VALQAPLASPAPWAQPNAVVQA--------SGARA*QGVAAAHPLASPAPRGVALRAPLA 295
           +A +A +A+PAP  QP+   +A        +G    +      P A PAPR V ++AP+ 
Sbjct: 394 IAARAQVAAPAPQPQPHLQEEAFRPQSKLFAGVAPTEAAPVMRP-AQPAPRPVEMQAPVQ 452

Query: 294 LPASQGVALRAREGEVVQ 241
            P  Q   ++    +VV+
Sbjct: 453 -PQMQAQPVQQEPTQVVR 469



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>FBLN4_MOUSE (Q9WVJ9) EGF-containing fibulin-like extracellular matrix protein 2|
           precursor (Fibulin-4) (FIBL-4) (Mutant p53-binding
           protein 1)
          Length = 443

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  CLSLIDAHKQEHHAAQQRHGLLCLPRGSAALMQLH 115
           CL++ +A K E        G LCLPR +A +  LH
Sbjct: 58  CLTIPEACKGEMKCINHYGGYLCLPRSAAVISDLH 92



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>FBLN4_HUMAN (O95967) EGF-containing fibulin-like extracellular matrix protein 2|
           precursor (Fibulin-4) (FIBL-4) (UPH1 protein)
          Length = 443

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  CLSLIDAHKQEHHAAQQRHGLLCLPRGSAALMQLH 115
           CL++ +A K E        G LCLPR +A +  LH
Sbjct: 58  CLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLH 92



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>FBLN4_CRIGR (O55058) EGF-containing fibulin-like extracellular matrix protein 2|
           precursor (Fibulin-4) (FIBL-4) (H411 protein)
          Length = 443

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  CLSLIDAHKQEHHAAQQRHGLLCLPRGSAALMQLH 115
           CL++ +A K E        G LCLPR +A +  LH
Sbjct: 58  CLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLH 92



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>IF2_PSEPK (Q88DV7) Translation initiation factor IF-2|
          Length = 846

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 390 QASGARA*QGVAAAHPLASPAPRGVALRAPLA--LPASQGVALRARE 256
           QA+G+ A     AA P  +PA   VA  AP+    PAS+  A RA E
Sbjct: 137 QAAGSAAAAPAPAAKPEPAPAAAPVAAPAPVVADAPASEDAAARAAE 183



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>HSP1_CYNVA (Q8WP00) Sperm protamine P1|
          Length = 46

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 415 RCRRRQRSLKCHTPWRRRCQSMSCRR 492
           RCRRR+RS +     RRR    SCRR
Sbjct: 11  RCRRRRRSCRRRRRCRRRRARRSCRR 36



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>YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11|
          Length = 154

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
 Frame = -2

Query: 429 ASPAPWAQ----PNAVVQASGARA*QGVAAA----HPLASPAPRGVALRAPLALPASQGV 274
           ASP+P A     P    Q+S A      AAA    HP A+P P G  + AP     SQG 
Sbjct: 7   ASPSPSAPVRSAPRPAAQSSFAAPPPRPAAAAPAYHPPAAPTPMGAPMGAP-----SQGP 61

Query: 273 ALRAREGEVVQXXXXXXXXXXXXXXXXXAPGRSDVVDTPSRAQPPLG 133
            L  +                         G S     P+ A  P G
Sbjct: 62  GLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAG 108



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 351  LPPHPAMPELPKPELPHL 404
            LPP PA+P  P+P  PHL
Sbjct: 992  LPPQPALPVRPEPLQPHL 1009



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>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400|
          Length = 980

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 435 PLASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVALRAP--LALPASQ 280
           P++SP P   P +   AS + A      A    +PAP GV+ R    LALP+ Q
Sbjct: 452 PVSSPGPSPVPVSPASASVSHAAPWEEPAAGRPAPAPSGVSRRGATRLALPSEQ 505



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>I3MS_BRANA (Q00650) Microspore-specific protein I3|
          Length = 156

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 435 PLASPAPWAQPNAVVQASGARA*QGVAAAHPLASPAPRGVA 313
           P A+ AP A P A   A+ A A     A  P A+PAP+  A
Sbjct: 112 PGAAAAPRAAPAAAPAAAPAAAPAAAPAPKPAAAPAPKPAA 152



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>PRTC1_PORGI (P59916) Collagenase precursor (EC 3.4.-.-)|
          Length = 334

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 65  HGLLCLPRGSAALMQLHEQCNTTPRGGCAR 154
           HG LC+       + LHE  ++  RG CA+
Sbjct: 96  HGALCMAVSGKCYLSLHEHNSSANRGACAQ 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,953,060
Number of Sequences: 219361
Number of extensions: 1188125
Number of successful extensions: 4282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4256
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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