No.
Definition
Score (bits)
E Value
1 ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group...
60
8e-06
2 ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA
60
8e-06
3 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
60
8e-06
4 dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D...
60
8e-06
5 dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clon...
60
8e-06
6 dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clon...
60
8e-06
7 gb|AY112347.1| Zea mays CL32321_1 mRNA sequence
60
8e-06
8 ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA
56
1e-04
9 ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA
56
1e-04
10 ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group...
56
1e-04
11 ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group...
56
1e-04
12 dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
13 dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
14 dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
15 dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
16 gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete...
42
1.9
17 gb|BC109470.1| Danio rerio cDNA clone IMAGE:7395403, containing ...
40
7.4
18 ref|XM_479034.1| Oryza sativa (japonica cultivar-group), mRNA
40
7.4
19 ref|XM_479030.1| Oryza sativa (japonica cultivar-group), mRNA
40
7.4
20 gb|J00554.1|MUSIGKJC1 Mus musculus immunoglobulin kappa precurso...
40
7.4
21 gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Can...
40
7.4
22 gb|BC083410.1| Danio rerio zgc:103514, mRNA (cDNA clone MGC:1035...
40
7.4
23 gb|AF513926.1| Mus musculus strain C57BL/6 immunoglobulin kappa ...
40
7.4
24 emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IR...
40
7.4
25 gb|AC105217.4| Homo sapiens chromosome , clone RP11-384E22, comp...
40
7.4
26 gb|AE012395.1| Xanthomonas campestris pv. campestris str. ATCC 3...
40
7.4
27 dbj|AK036494.1| Mus musculus adult male bone cDNA, RIKEN full-le...
40
7.4
28 gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...
40
7.4
29 ref|NM_001006014.1| Danio rerio zgc:103514 (zgc:103514), mRNA
40
7.4
30 dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete...
40
7.4
31 gb|AC153612.6| Mus musculus 6 BAC RP23-435I4 (Roswell Park Cance...
40
7.4
32 dbj|AK107490.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.4
33 dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.4
34 gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, comple...
40
7.4
35 gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromoso...
40
7.4
36 gb|M34473.1|MUSIGKABM Mouse Ig processed pseudo-kappa-chain mRNA...
40
7.4
>ref|XM_506447.1 | PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112
mRNA
Length = 1006
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 382
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 94 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 131
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 361 tcgtgccggagctgccaaagcccga 385
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 558 caccccgtcgtgccggagttgccaaagcctga 589
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcc 505
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 185 gccggagcttcccaagcctgagctgccgccgcaccc 220
>ref|XM_479031.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 1005
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 379
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 91 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 128
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 358 tcgtgccggagctgccaaagcccga 382
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 555 caccccgtcgtgccggagttgccaaagcctga 586
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcc 502
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 182 gccggagcttcccaagcctgagctgccgccgcaccc 217
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 24417350 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 24417293
Score = 56.0 bits (28), Expect = 1e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 182 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||| || |||||||| || |||||||||| || | |||| ||||||||||||||
Sbjct: 24428166 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 24428107
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 24419311 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 24419252
Query: 238 agcctgaa 245
||||||||
Sbjct: 24419251 agcctgaa 24419244
Score = 54.0 bits (27), Expect = 5e-04
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatgagcag 121
|||||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 24428254 tcttcctcatggcgctgctgctctcatggagctccatcagcag 24428212
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 24417212 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 24417154
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 24417442 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 24417405
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 300 aaggagcccgaagtgccacaccccgaggtgccgga 334
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 24428069 aaggtgcctgaactgccacaccccgaggtgccgga 24428035
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 24419447 ccgccacaccccgtcgtgccggagctgccaaagcc 24419413
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 24419348 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 24419291
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 24419894 ctgctgctctcgtccagctccatgagcag 24419866
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 24417175 tcgtgccggagctgccaaagcccga 24417151
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccga 202
||||||||||||||||||||
Sbjct: 24428123 ccggagctgccaaagcccga 24428104
Score = 40.1 bits (20), Expect = 7.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 432 aaggagcctgaagtgccacaccccatggcgccggaggtgccaaagcatgagctgccgccg 491
|||| ||||||| ||||||||||| || |||||| |||| |||| ||| |||| |
Sbjct: 24428069 aaggtgcctgaactgccacaccccgaggtgccggaattgccgaagcctgaattgcctgag 24428010
Query: 492 caccctgctatgcccgagcccccgaagcctga 523
|||||||| |||| |||| ||||||||||||
Sbjct: 24428009 caccctgcggtgccggagctcccgaagcctga 24427978
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 360 caccctgctatgcccgagctcccgaagcctga 391
|||||||| |||| |||||||||||||||||
Sbjct: 24428009 caccctgcggtgccggagctcccgaagcctga 24427978
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 324 gaggtgccggagacgccaaaggatgagctgccgcca 359
||||||||||||| || |||| |||||||||||||
Sbjct: 24424161 gaggtgccggagattcccaaggctgagctgccgcca 24424126
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 24419778 gccggagctgcccaagcatgaggagccgccgcaccc 24419743
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 24417351 gccggagcttcccaagcctgagctgccgccgcaccc 24417316
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 24417062 ccgcaccccgtcgtgccggagctgccgaagcc 24417031
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 24416978 caccccgtcgtgccggagttgccaaagcctga 24416947
Score = 40.1 bits (20), Expect = 7.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 469 tgccaaagcatgagctgccgccgcaccc 496
|||| |||| ||||||||||||||||||
Sbjct: 24413475 tgcccaagcctgagctgccgccgcaccc 24413448
>dbj|AP003840.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1634_B10
Length = 100294
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 43217 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 43160
Score = 56.0 bits (28), Expect = 1e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 182 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||| || |||||||| || |||||||||| || | |||| ||||||||||||||
Sbjct: 54033 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 53974
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 45178 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 45119
Query: 238 agcctgaa 245
||||||||
Sbjct: 45118 agcctgaa 45111
Score = 54.0 bits (27), Expect = 5e-04
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatgagcag 121
|||||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 54121 tcttcctcatggcgctgctgctctcatggagctccatcagcag 54079
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 43079 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 43021
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 43309 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 43272
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 300 aaggagcccgaagtgccacaccccgaggtgccgga 334
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 53936 aaggtgcctgaactgccacaccccgaggtgccgga 53902
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 45314 ccgccacaccccgtcgtgccggagctgccaaagcc 45280
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 45215 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 45158
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 45761 ctgctgctctcgtccagctccatgagcag 45733
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 43042 tcgtgccggagctgccaaagcccga 43018
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 ccggagctgccaaagcccga 202
||||||||||||||||||||
Sbjct: 53990 ccggagctgccaaagcccga 53971
Score = 40.1 bits (20), Expect = 7.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 432 aaggagcctgaagtgccacaccccatggcgccggaggtgccaaagcatgagctgccgccg 491
|||| ||||||| ||||||||||| || |||||| |||| |||| ||| |||| |
Sbjct: 53936 aaggtgcctgaactgccacaccccgaggtgccggaattgccgaagcctgaattgcctgag 53877
Query: 492 caccctgctatgcccgagcccccgaagcctga 523
|||||||| |||| |||| ||||||||||||
Sbjct: 53876 caccctgcggtgccggagctcccgaagcctga 53845
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 360 caccctgctatgcccgagctcccgaagcctga 391
|||||||| |||| |||||||||||||||||
Sbjct: 53876 caccctgcggtgccggagctcccgaagcctga 53845
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 324 gaggtgccggagacgccaaaggatgagctgccgcca 359
||||||||||||| || |||| |||||||||||||
Sbjct: 50028 gaggtgccggagattcccaaggctgagctgccgcca 49993
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 45645 gccggagctgcccaagcatgaggagccgccgcaccc 45610
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 43218 gccggagcttcccaagcctgagctgccgccgcaccc 43183
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 42929 ccgcaccccgtcgtgccggagctgccgaagcc 42898
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 42845 caccccgtcgtgccggagttgccaaagcctga 42814
Score = 40.1 bits (20), Expect = 7.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 469 tgccaaagcatgagctgccgccgcaccc 496
|||| |||| ||||||||||||||||||
Sbjct: 39342 tgcccaagcctgagctgccgccgcaccc 39315
>dbj|AK106010.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full
insert sequence
Length = 1005
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 379
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 91 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 128
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 358 tcgtgccggagctgccaaagcccga 382
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 555 caccccgtcgtgccggagttgccaaagcctga 586
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcc 502
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 182 gccggagcttcccaagcctgagctgccgccgcaccc 217
>dbj|AK068696.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full
insert sequence
Length = 1006
Score = 60.0 bits (30), Expect = 8e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
|||||||| || ||||| || || ||||||||||||||| |||| |||||||||||||
Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243
Score = 54.0 bits (27), Expect = 5e-04
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||||| |||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 382
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatg 116
||||||||||||| ||||||||||| |||||| |||||
Sbjct: 94 tcttcctcgtggcgctgctgctctcgtgcagcaccatg 131
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccga 202
|||| ||||||||||||||||||||
Sbjct: 361 tcgtgccggagctgccaaagcccga 385
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 213 caccccgtcatgcccgagctgccaaagcctga 244
||||||||| |||| ||| |||||||||||||
Sbjct: 558 caccccgtcgtgccggagttgccaaagcctga 589
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 210 ccgcaccccgtcatgcccgagctgccaaagcc 241
|||||||||||| |||| |||||||| |||||
Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcc 505
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| | || |||| ||||||||||||||||||
Sbjct: 185 gccggagcttcccaagcctgagctgccgccgcaccc 220
>ref|XM_479036.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 678
Score = 56.0 bits (28), Expect = 1e-04
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 182 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||| || |||||||| || |||||||||| || | |||| ||||||||||||||
Sbjct: 192 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 251
Score = 54.0 bits (27), Expect = 5e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatgagcag 121
|||||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 104 tcttcctcatggcgctgctgctctcatggagctccatcagcag 146
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 300 aaggagcccgaagtgccacaccccgaggtgccgga 334
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 360 caccctgctatgcccgagctcccgaagcctga 391
|||||||| |||| |||||||||||||||||
Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380
Score = 40.1 bits (20), Expect = 7.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 432 aaggagcctgaagtgccacaccccatggcgccggaggtgccaaagcatgagctgccgccg 491
|||| ||||||| ||||||||||| || |||||| |||| |||| ||| |||| |
Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccggaattgccgaagcctgaattgcctgag 348
Query: 492 caccctgctatgcccgagcccccgaagcctga 523
|||||||| |||| |||| ||||||||||||
Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccga 202
||||||||||||||||||||
Sbjct: 235 ccggagctgccaaagcccga 254
>ref|XM_479032.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 994
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 690 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 749
Query: 238 agcctgaa 245
||||||||
Sbjct: 750 agcctgaa 757
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 554 ccgccacaccccgtcgtgccggagctgccaaagcc 588
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 653 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 710
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 107 ctgctgctctcgtccagctccatgagcag 135
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 223 gccggagctgcccaagcatgaggagccgccgcaccc 258
>ref|XM_507388.1 | PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113
mRNA
Length = 1071
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748
Query: 238 agcctgaa 245
||||||||
Sbjct: 749 agcctgaa 756
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 106 ctgctgctctcgtccagctccatgagcag 134
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 222 gccggagctgcccaagcatgaggagccgccgcaccc 257
>ref|XM_506448.1 | PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113
mRNA
Length = 1071
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748
Query: 238 agcctgaa 245
||||||||
Sbjct: 749 agcctgaa 756
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 106 ctgctgctctcgtccagctccatgagcag 134
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 222 gccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK106214.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full
insert sequence
Length = 1071
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748
Query: 238 agcctgaa 245
||||||||
Sbjct: 749 agcctgaa 756
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 106 ctgctgctctcgtccagctccatgagcag 134
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 222 gccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK105918.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full
insert sequence
Length = 1071
Score = 56.0 bits (28), Expect = 1e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 178 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 237
|||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| |
Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748
Query: 238 agcctgaa 245
||||||||
Sbjct: 749 agcctgaa 756
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 ccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||| ||||||||| |||| ||||||||||||||
Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587
Score = 44.1 bits (22), Expect = 0.47
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 240
||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| ||||
Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
Score = 42.1 bits (21), Expect = 1.9
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ctgctgctctcatgcagctccatgagcag 121
||||||||||| | |||||||||||||||
Sbjct: 106 ctgctgctctcgtccagctccatgagcag 134
Score = 40.1 bits (20), Expect = 7.4
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 461 gccggaggtgccaaagcatgagctgccgccgcaccc 496
||||||| |||| ||||||||| ||||||||||||
Sbjct: 222 gccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK062673.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full
insert sequence
Length = 678
Score = 56.0 bits (28), Expect = 1e-04
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 182 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 241
||||||||| || |||||||| || |||||||||| || | |||| ||||||||||||||
Sbjct: 192 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 251
Score = 54.0 bits (27), Expect = 5e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 79 tcttcctcgtggctctgctgctctcatgcagctccatgagcag 121
|||||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 104 tcttcctcatggcgctgctgctctcatggagctccatcagcag 146
Score = 46.1 bits (23), Expect = 0.12
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 300 aaggagcccgaagtgccacaccccgaggtgccgga 334
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323
Score = 40.1 bits (20), Expect = 7.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 360 caccctgctatgcccgagctcccgaagcctga 391
|||||||| |||| |||||||||||||||||
Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380
Score = 40.1 bits (20), Expect = 7.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 432 aaggagcctgaagtgccacaccccatggcgccggaggtgccaaagcatgagctgccgccg 491
|||| ||||||| ||||||||||| || |||||| |||| |||| ||| |||| |
Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccggaattgccgaagcctgaattgcctgag 348
Query: 492 caccctgctatgcccgagcccccgaagcctga 523
|||||||| |||| |||| ||||||||||||
Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 ccggagctgccaaagcccga 202
||||||||||||||||||||
Sbjct: 235 ccggagctgccaaagcccga 254
>gb|M34473.1 |MUSIGKABM Mouse Ig processed pseudo-kappa-chain mRNA J-C-region
Length = 798
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 tggcctcctttgtcttcctc 86
||||||||||||||||||||
Sbjct: 304 tggcctcctttgtcttcctc 323
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,605,247
Number of Sequences: 3902068
Number of extensions: 3605247
Number of successful extensions: 71020
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70540
Number of HSP's gapped (non-prelim): 468
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)