Clone Name | bart32a02 |
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Clone Library Name | barley_pub |
>Y1342_ARATH (Q9C810) PHD finger protein At1g33420| Length = 697 Score = 85.5 bits (210), Expect = 1e-16 Identities = 54/135 (40%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Frame = +3 Query: 114 GRPLKKARTR----AEARDFAGFPAP---ADGWAVGTFREAVRGFLARHARXXXXXXXXX 272 GR K+AR A+ DF+ FP + + FR+ VR FLA HAR Sbjct: 7 GRATKRARRSNRISADLYDFSTFPTAEINGESTTLPPFRDGVRTFLATHARVTFPPSTLF 66 Query: 273 XXXXXXXXXXXTWRVSLRXXXXXXXXXXXXXXXXLNVVEEDVLRS-RSVYCDQCRVVGWS 449 TW++ LR L+VVEEDV RS RSVYC+ C VVGWS Sbjct: 67 SSLM-------TWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWS 119 Query: 450 GHPVCGKRYHFIIEN 494 HPVC KRY FII + Sbjct: 120 SHPVCRKRYRFIIRS 134
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%) Frame = -3 Query: 271 EKMEGSGSSRACLARKPLTASRNVPT------------AQPSAGAGKPAKSLASARVLAF 128 E SGS ++ A KP A P A+P+A A KPA + SA A Sbjct: 49 EHYGSSGSDKSDTAAKPAAAKPAAPKPAASAAPKPGAPAKPAAPAAKPAPAAPSAASAAK 108 Query: 127 FSGRPFTTISAPPSVGSRQIWPLRPPSPS 41 P + A P+ ++ P +P +P+ Sbjct: 109 PGAAPKPGVQAKPAAAAKPGAPAKPAAPA 137
>HEM3_NOCFA (Q5YP70) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 346 Score = 32.3 bits (72), Expect = 0.96 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2 Query: 200 PDRPAVRGRREAREVPGLGARPRLLQRPAVHHHLRS---ALRRISSDLAAPPPV 48 P+R A GR ARE+ LGAR L++ A RS A+R +DL+ P P+ Sbjct: 289 PERAAELGRALARELLELGARELLVEVAATEPGARSGTGAVRPPETDLSNPSPM 342
>SPAST_MOUSE (Q9QYY8) Spastin| Length = 614 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -3 Query: 268 KMEGSGSSRACLARKPLTASRNVPTAQPSAGAGKPAK----SLASARVLAF 128 K +GSG + AR P A+ P A P+ AG P K S +S V+ F Sbjct: 9 KKKGSGGASPAPARPPPPAAVPAPAAGPAPAAGSPPKRNPSSFSSPLVVGF 59
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = -3 Query: 217 TASRNVPTAQPSAGAGK---PAKSLASA-RVLAFFSGRPFTTISAPPSVG 80 T S TA P GAG P+ S+ +A + AF SG P S PPS G Sbjct: 1058 TPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFGSGEPSNPASNPPSTG 1107
>ATPB_PECFR (Q03235) ATP synthase beta chain (EC 3.6.3.14)| Length = 470 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = -3 Query: 259 GSGSSRACLARKPLTASRNVPTAQPSAGAGKPAKSLASARVLAFFSGRPFTTISA----- 95 G G +R C+A ++++ + + G P K L GR F + Sbjct: 52 GDGITR-CIA---MSSTDGLTRGMEAVDTGSPIKVPVGEETL----GRVFNVLGQTVDHN 103 Query: 94 PPSVGSRQIWPLRPPSPSF 38 P VG+++ WP+ P+P F Sbjct: 104 PAPVGNKEFWPIHRPAPKF 122
>Y272_SYNY3 (P73893) Hypothetical protein slr0272| Length = 325 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -3 Query: 121 GRPFTTISAPPSVGSRQIWPLRPPSPSFLVVVVEPDRNRG 2 G P S PPS + PL PP P+F V V P RG Sbjct: 25 GCPVALTSEPPSFSGPPLSPLPPPPPTFNVDEV-PSHKRG 63
>HXB1_CHICK (P31259) Homeobox protein Hox-B1 (Ghox-lab)| Length = 309 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -2 Query: 227 EAPDRLPERPDRPAVRGRREAREVPGLGARPRLLQRPAVHHHL 99 ++P P P P++RGR R VP +PRL HH L Sbjct: 65 QSPGFFPAPPGAPSLRGRCPERRVPNPKLQPRLR-----HHQL 102
>GPDA_BRAJA (Q89WW0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 326 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -2 Query: 227 EAPDRLPERPDRPAVRGRREAREVP-----GLGARPRLLQRPAVHHHLRSALRRISSDLA 63 E R+ D P + G R A ++ L AR +L HLR A+ ++S +A Sbjct: 38 EHATRIASTRDNPRLPGVRLAPDIVVTSELALAARADMLLIATPAQHLRGAVNMLASHIA 97 Query: 62 APPPV 48 P PV Sbjct: 98 RPTPV 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,643,487 Number of Sequences: 219361 Number of extensions: 937535 Number of successful extensions: 4154 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4140 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)