ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1342_ARATH (Q9C810) PHD finger protein At1g33420 86 1e-16
2IF2_CORGL (Q8NP40) Translation initiation factor IF-2 34 0.25
3HEM3_NOCFA (Q5YP70) Porphobilinogen deaminase (EC 2.5.1.61) (PBG... 32 0.96
4SPAST_MOUSE (Q9QYY8) Spastin 30 3.6
5NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nu... 30 4.8
6ATPB_PECFR (Q03235) ATP synthase beta chain (EC 3.6.3.14) 30 6.2
7Y272_SYNY3 (P73893) Hypothetical protein slr0272 30 6.2
8HXB1_CHICK (P31259) Homeobox protein Hox-B1 (Ghox-lab) 29 8.1
9GPDA_BRAJA (Q89WW0) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 29 8.1

>Y1342_ARATH (Q9C810) PHD finger protein At1g33420|
          Length = 697

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 54/135 (40%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
 Frame = +3

Query: 114 GRPLKKARTR----AEARDFAGFPAP---ADGWAVGTFREAVRGFLARHARXXXXXXXXX 272
           GR  K+AR      A+  DF+ FP      +   +  FR+ VR FLA HAR         
Sbjct: 7   GRATKRARRSNRISADLYDFSTFPTAEINGESTTLPPFRDGVRTFLATHARVTFPPSTLF 66

Query: 273 XXXXXXXXXXXTWRVSLRXXXXXXXXXXXXXXXXLNVVEEDVLRS-RSVYCDQCRVVGWS 449
                      TW++ LR                L+VVEEDV RS RSVYC+ C VVGWS
Sbjct: 67  SSLM-------TWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWS 119

Query: 450 GHPVCGKRYHFIIEN 494
            HPVC KRY FII +
Sbjct: 120 SHPVCRKRYRFIIRS 134



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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
 Frame = -3

Query: 271 EKMEGSGSSRACLARKPLTASRNVPT------------AQPSAGAGKPAKSLASARVLAF 128
           E    SGS ++  A KP  A    P             A+P+A A KPA +  SA   A 
Sbjct: 49  EHYGSSGSDKSDTAAKPAAAKPAAPKPAASAAPKPGAPAKPAAPAAKPAPAAPSAASAAK 108

Query: 127 FSGRPFTTISAPPSVGSRQIWPLRPPSPS 41
               P   + A P+  ++   P +P +P+
Sbjct: 109 PGAAPKPGVQAKPAAAAKPGAPAKPAAPA 137



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>HEM3_NOCFA (Q5YP70) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 346

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -2

Query: 200 PDRPAVRGRREAREVPGLGARPRLLQRPAVHHHLRS---ALRRISSDLAAPPPV 48
           P+R A  GR  ARE+  LGAR  L++  A     RS   A+R   +DL+ P P+
Sbjct: 289 PERAAELGRALARELLELGARELLVEVAATEPGARSGTGAVRPPETDLSNPSPM 342



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>SPAST_MOUSE (Q9QYY8) Spastin|
          Length = 614

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 268 KMEGSGSSRACLARKPLTASRNVPTAQPSAGAGKPAK----SLASARVLAF 128
           K +GSG +    AR P  A+   P A P+  AG P K    S +S  V+ F
Sbjct: 9   KKKGSGGASPAPARPPPPAAVPAPAAGPAPAAGSPPKRNPSSFSSPLVVGF 59



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>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)|
          Length = 1159

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 217  TASRNVPTAQPSAGAGK---PAKSLASA-RVLAFFSGRPFTTISAPPSVG 80
            T S    TA P  GAG    P+ S+ +A +  AF SG P    S PPS G
Sbjct: 1058 TPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFGSGEPSNPASNPPSTG 1107



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>ATPB_PECFR (Q03235) ATP synthase beta chain (EC 3.6.3.14)|
          Length = 470

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = -3

Query: 259 GSGSSRACLARKPLTASRNVPTAQPSAGAGKPAKSLASARVLAFFSGRPFTTISA----- 95
           G G +R C+A   ++++  +     +   G P K       L    GR F  +       
Sbjct: 52  GDGITR-CIA---MSSTDGLTRGMEAVDTGSPIKVPVGEETL----GRVFNVLGQTVDHN 103

Query: 94  PPSVGSRQIWPLRPPSPSF 38
           P  VG+++ WP+  P+P F
Sbjct: 104 PAPVGNKEFWPIHRPAPKF 122



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>Y272_SYNY3 (P73893) Hypothetical protein slr0272|
          Length = 325

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 121 GRPFTTISAPPSVGSRQIWPLRPPSPSFLVVVVEPDRNRG 2
           G P    S PPS     + PL PP P+F V  V P   RG
Sbjct: 25  GCPVALTSEPPSFSGPPLSPLPPPPPTFNVDEV-PSHKRG 63



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>HXB1_CHICK (P31259) Homeobox protein Hox-B1 (Ghox-lab)|
          Length = 309

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 227 EAPDRLPERPDRPAVRGRREAREVPGLGARPRLLQRPAVHHHL 99
           ++P   P  P  P++RGR   R VP    +PRL      HH L
Sbjct: 65  QSPGFFPAPPGAPSLRGRCPERRVPNPKLQPRLR-----HHQL 102



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>GPDA_BRAJA (Q89WW0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 326

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -2

Query: 227 EAPDRLPERPDRPAVRGRREAREVP-----GLGARPRLLQRPAVHHHLRSALRRISSDLA 63
           E   R+    D P + G R A ++       L AR  +L       HLR A+  ++S +A
Sbjct: 38  EHATRIASTRDNPRLPGVRLAPDIVVTSELALAARADMLLIATPAQHLRGAVNMLASHIA 97

Query: 62  APPPV 48
            P PV
Sbjct: 98  RPTPV 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,643,487
Number of Sequences: 219361
Number of extensions: 937535
Number of successful extensions: 4154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4140
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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