Clone Name | bart32a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481268.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1292 Score = 361 bits (182), Expect = 2e-96 Identities = 343/399 (85%) Strand = Plus / Plus Query: 143 gcgatgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctc 202 |||||||||||||||||||| |||||||| ||| |||| || |||||| ||||||||| Sbjct: 135 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 194 Query: 203 tccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggcc 262 ||||| |||||| |||||||||||||||||||||||||||||||||| | || |||| Sbjct: 195 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggg 254 Query: 263 gccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagatt 322 ||||||| ||||||||| | || ||||||| |||||||||| ||||||||||||||| Sbjct: 255 gccaactccttcaagctcgccaagaactggagcagagctgcacaagtgtacatcaagatt 314 Query: 323 gctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagct 382 ||||| |||||| ||||||| || ||||||||||||||||||||||||||||| || || Sbjct: 315 gctaactgccatttgaagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcg 374 Query: 383 gcaaactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgtt 442 ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||| || |||||||| Sbjct: 375 gcaaattgctataaaaagttctctcctcaagaggctgcacaagcgctaaaccaggctgtt 434 Query: 443 aatcnnnnnnnggaaattggtagattgagcatggctgcaagatactgcaaggacattggt 502 ||| ||||||||||||||||| ||||||||||||||| || |||||||||||| Sbjct: 435 gatcttttcttggaaattggtagattgaacatggctgcaagatattgtaaggacattggt 494 Query: 503 gagatttatcagcacgaacaagatttggagaaggcttca 541 ||||| ||||| || ||||||||||| |||||||||||| Sbjct: 495 gagatatatcatcaagaacaagatttagagaaggcttca 533
>dbj|AK100935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136I24, full insert sequence Length = 1292 Score = 361 bits (182), Expect = 2e-96 Identities = 343/399 (85%) Strand = Plus / Plus Query: 143 gcgatgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctc 202 |||||||||||||||||||| |||||||| ||| |||| || |||||| ||||||||| Sbjct: 135 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 194 Query: 203 tccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggcc 262 ||||| |||||| |||||||||||||||||||||||||||||||||| | || |||| Sbjct: 195 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggg 254 Query: 263 gccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagatt 322 ||||||| ||||||||| | || ||||||| |||||||||| ||||||||||||||| Sbjct: 255 gccaactccttcaagctcgccaagaactggagcagagctgcacaagtgtacatcaagatt 314 Query: 323 gctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagct 382 ||||| |||||| ||||||| || ||||||||||||||||||||||||||||| || || Sbjct: 315 gctaactgccatttgaagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcg 374 Query: 383 gcaaactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgtt 442 ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||| || |||||||| Sbjct: 375 gcaaattgctataaaaagttctctcctcaagaggctgcacaagcgctaaaccaggctgtt 434 Query: 443 aatcnnnnnnnggaaattggtagattgagcatggctgcaagatactgcaaggacattggt 502 ||| ||||||||||||||||| ||||||||||||||| || |||||||||||| Sbjct: 435 gatcttttcttggaaattggtagattgaacatggctgcaagatattgtaaggacattggt 494 Query: 503 gagatttatcagcacgaacaagatttggagaaggcttca 541 ||||| ||||| || ||||||||||| |||||||||||| Sbjct: 495 gagatatatcatcaagaacaagatttagagaaggcttca 533
>gb|AY104060.1| Zea mays PCO133307 mRNA sequence Length = 1368 Score = 349 bits (176), Expect = 6e-93 Identities = 337/393 (85%) Strand = Plus / Plus Query: 146 atgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctctcc 205 ||||| || |||||||||||||| || ||| |||| || |||||| ||||||||||| Sbjct: 196 atgggtgatcacgaggcgcgcggtgatgacttcgagaagaaggcggagaagaagctctcg 255 Query: 206 ggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggccgcc 265 |||||||| ||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 256 ggctggggcctcttcggctccaagtacgaggacgccgccgacctcttcgacaaggctgcg 315 Query: 266 aactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagattgct 325 |||| ||||||||| | || ||||||| |||||||||||| || ||||||||||||||| Sbjct: 316 aactccttcaagctcgccaagaactggagcagagctgcatcagtttacatcaagattgct 375 Query: 326 aattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagctgca 385 || || ||| ||||||| ||||| |||||||| ||||||||||| || || || || ||| Sbjct: 376 aactgtcatttgaagggagatagcaagcatgaggctgcctcagcgtacgtcgaggcagca 435 Query: 386 aactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgttaat 445 || ||||||||||| || ||||||||||||||||||||||||||| || || |||||||| Sbjct: 436 aattgctacaaaaagttttcacctcaggaagctgcgcaagcgctaaaccagtctgttaat 495 Query: 446 cnnnnnnnggaaattggtagattgagcatggctgcaagatactgcaaggacattggtgag 505 | |||||||||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 496 cttttcttggaaattggtaggttgaacatggctgcaagatacagcaaggacattggtgag 555 Query: 506 atttatcagcacgaacaagatttggagaaggct 538 || |||||||| ||||||||||| ||||||||| Sbjct: 556 atatatcagcaagaacaagatttagagaaggct 588
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 143 gcgatgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctc 202 |||||||||||||||||||| |||||||| ||| |||| || |||||| ||||||||| Sbjct: 11096517 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 11096576 Query: 203 tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 249 ||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 11096577 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 11096623 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 347 agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 406 ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct: 11097688 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 11097747 Query: 407 cctca 411 ||||| Sbjct: 11097748 cctca 11097752 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 492 aggacattggtgagatttatcagcacgaacaagatttggagaaggcttca 541 |||||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 11099352 aggacattggtgagatatatcatcaagaacaagatttagagaaggcttca 11099401 Score = 60.0 bits (30), Expect = 8e-06 Identities = 59/71 (83%) Strand = Plus / Plus Query: 416 gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 475 ||||| ||||||||| || |||||||| ||| ||||||||||||||||| |||| Sbjct: 11099124 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 11099183 Query: 476 gctgcaagata 486 ||||||||||| Sbjct: 11099184 gctgcaagata 11099194 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 295 cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 341 |||||||||| |||||||||||||||||||| |||||| |||||| Sbjct: 11097547 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 11097593
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 143 gcgatgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctc 202 |||||||||||||||||||| |||||||| ||| |||| || |||||| ||||||||| Sbjct: 67123 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 67182 Query: 203 tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 249 ||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 67183 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 67229 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 347 agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 406 ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct: 68294 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 68353 Query: 407 cctca 411 ||||| Sbjct: 68354 cctca 68358 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 492 aggacattggtgagatttatcagcacgaacaagatttggagaaggcttca 541 |||||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 69958 aggacattggtgagatatatcatcaagaacaagatttagagaaggcttca 70007 Score = 60.0 bits (30), Expect = 8e-06 Identities = 59/71 (83%) Strand = Plus / Plus Query: 416 gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 475 ||||| ||||||||| || |||||||| ||| ||||||||||||||||| |||| Sbjct: 69730 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 69789 Query: 476 gctgcaagata 486 ||||||||||| Sbjct: 69790 gctgcaagata 69800 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 295 cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 341 |||||||||| |||||||||||||||||||| |||||| |||||| Sbjct: 68153 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 68199
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 143 gcgatgggggaccacgaggcgcgcggggacgacacggagaggagggcggacaagaagctc 202 |||||||||||||||||||| |||||||| ||| |||| || |||||| ||||||||| Sbjct: 55033 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 55092 Query: 203 tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 249 ||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 55093 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 55139 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 347 agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 406 ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct: 56204 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 56263 Query: 407 cctca 411 ||||| Sbjct: 56264 cctca 56268 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 492 aggacattggtgagatttatcagcacgaacaagatttggagaaggcttca 541 |||||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 57868 aggacattggtgagatatatcatcaagaacaagatttagagaaggcttca 57917 Score = 60.0 bits (30), Expect = 8e-06 Identities = 59/71 (83%) Strand = Plus / Plus Query: 416 gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 475 ||||| ||||||||| || |||||||| ||| ||||||||||||||||| |||| Sbjct: 57640 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 57699 Query: 476 gctgcaagata 486 ||||||||||| Sbjct: 57700 gctgcaagata 57710 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 295 cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 341 |||||||||| |||||||||||||||||||| |||||| |||||| Sbjct: 56063 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 56109
>gb|BT018828.1| Zea mays clone EL01N0551C05.d mRNA sequence Length = 1753 Score = 101 bits (51), Expect = 2e-18 Identities = 266/340 (78%) Strand = Plus / Plus Query: 195 agaagctctccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatg 254 ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| | Sbjct: 148 agaagctctccggctggggcctcttcggcaataagtacgaggaagccgccgacctcctcg 207 Query: 255 ataaggccgccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtaca 314 | | ||| | || ||| ||||| ||| | || ||||||| |||||| || | || |||| Sbjct: 208 acagggctggcagcttcttcaaactcgcgaagaactggagcagagcggctgcggtataca 267 Query: 315 tcaagattgctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatg 374 |||||||| |||| ||| || |||| |||| ||||| || |||||||| ||||||| Sbjct: 268 aaaagattgcagattgtcatttgcagggggataacaagcacgatgctgcctctgcttatg 327 Query: 375 tggaagctgcaaactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacg 434 | || || |||||||||||||| || ||||| | || || ||||| ||||| || ||| Sbjct: 328 ttgaggcagcaaactgctacaagaagttctccctgcaagatgctgcacaagcacttgaca 387 Query: 435 aggctgttaatcnnnnnnnggaaattggtagattgagcatggctgcaagatactgcaagg 494 || ||||||| |||||| ||||| ||| |||||||||||||||| |||||| Sbjct: 388 gtgccgttaatcttttccaggaaatcagtagactgaacatggctgcaagatacagcaagg 447 Query: 495 acattggtgagatttatcagcacgaacaagatttggagaa 534 | || ||||| || |||| ||| ||||||||||| ||||| Sbjct: 448 atatcggtgaaatctatctgcaagaacaagatttagagaa 487
>gb|AC084656.1|CBRG46J06 Caenorhabditis briggsae cosmid G46J06, complete sequence Length = 42404 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 ccggagcagcagccagtcggca 142 |||||||||||||||||||||| Sbjct: 19346 ccggagcagcagccagtcggca 19367
>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 290 tggaacagagctgcatctgtgtacat 315 |||||||||||||||| ||||||||| Sbjct: 115034 tggaacagagctgcatgtgtgtacat 115009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 9550613 ttccccttcctcttctccttt 9550593
>ref|XM_862345.1| PREDICTED: Canis familiaris similar to alpha 1 type XII collagen short isoform precursor, transcript variant 3 (LOC481881), mRNA Length = 9968 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 agatactgcaaggacattggtgaga 506 |||||||| |||||||||||||||| Sbjct: 5786 agatactggaaggacattggtgaga 5810
>ref|XM_862338.1| PREDICTED: Canis familiaris similar to alpha 1 type XII collagen short isoform precursor, transcript variant 2 (LOC481881), mRNA Length = 6738 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 agatactgcaaggacattggtgaga 506 |||||||| |||||||||||||||| Sbjct: 2328 agatactggaaggacattggtgaga 2352
>ref|XM_539002.2| PREDICTED: Canis familiaris similar to alpha 1 type XII collagen short isoform precursor, transcript variant 1 (LOC481881), mRNA Length = 10196 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 agatactgcaaggacattggtgaga 506 |||||||| |||||||||||||||| Sbjct: 5786 agatactggaaggacattggtgaga 5810
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence Length = 218747 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 37 tttccgttccccttcctcttctcctttcg 65 ||||| |||||||||| |||||||||||| Sbjct: 102040 tttcccttccccttccgcttctcctttcg 102068
>gb|AC099593.6| Mus musculus chromosome 10, clone RP23-447D24, complete sequence Length = 176068 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 174210 ttccccttcctcttctccttt 174230
>ref|XM_777190.1| PREDICTED: Strongylocentrotus purpuratus similar to Macrophage mannose receptor 1 precursor (MMR) (LOC576927), mRNA Length = 14487 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 gttccccttcctcttctcctt 62 ||||||||||||||||||||| Sbjct: 10200 gttccccttcctcttctcctt 10180
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tccgttccccttcctcttctc 59 ||||||||||||||||||||| Sbjct: 277991 tccgttccccttcctcttctc 277971
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 ggagcagcagccagtcggcag 143 ||||||||||||||||||||| Sbjct: 1013690 ggagcagcagccagtcggcag 1013670
>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 123368 ttccccttcctcttctccttt 123388
>gb|AF293452.1|AF293452 Mus musculus N-deacetylase/N-sulfotransferase (Ndst2) gene, promoter sequence and 5'UTR Length = 2313 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 37 tttccgttccccttcctcttctcctttcg 65 ||||| |||||||||| |||||||||||| Sbjct: 1970 tttcccttccccttccgcttctcctttcg 1942
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 9548734 ttccccttcctcttctccttt 9548714
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 62073 ttccccttcctcttctccttt 62093
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 74600 ttccccttcctcttctccttt 74620
>ref|NM_007730.1| Mus musculus procollagen, type XII, alpha 1 (Col12a1), mRNA Length = 9704 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 agatactgcaaggacattggtgaga 506 |||||||| |||||||||||||||| Sbjct: 5879 agatactggaaggacattggtgaga 5903
>gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosome unknown, complete sequence Length = 192621 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctccttt 63 ||||||||||||||||||||| Sbjct: 164038 ttccccttcctcttctccttt 164018
>gb|U25652.1|MMU25652 Mus musculus collagen type XII alpha-1 precursor (Col12a1) mRNA, complete cds Length = 9704 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 agatactgcaaggacattggtgaga 506 |||||||| |||||||||||||||| Sbjct: 5879 agatactggaaggacattggtgaga 5903
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ggagcagcagccagtcggcag 143 ||||||||||||||||||||| Sbjct: 607182 ggagcagcagccagtcggcag 607202
>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete sequence Length = 161653 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 aaaaaactggaacagagctg 302 |||||||||||||||||||| Sbjct: 9043 aaaaaactggaacagagctg 9024
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 40.1 bits (20), Expect = 7.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctttcgttttctgctcctc 78 ||||||||| || |||||||||||||||| |||||| Sbjct: 27083 ttccccttc-tcctctcctttcgttttctcctcctc 27117
>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland Research Institute) complete sequence Length = 133054 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ggaacagagctgcatctgtgtaca 314 ||||||||||||||| |||||||| Sbjct: 17950 ggaacagagctgcatgtgtgtaca 17973
>ref|XM_603299.2| PREDICTED: Bos taurus similar to Antigen peptide transporter 1 (APT1) (Peptide transporter TAP1) (ATP-binding cassette sub-family B member 2) (Peptide transporter PSF1) (Peptide supply factor 1) (PSF-1) (Peptide transporter involved in antigen processing 1)... (LOC524959), mRNA Length = 2965 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 cggccggagcagcagccagtcggc 141 |||||||||||||| ||||||||| Sbjct: 114 cggccggagcagcatccagtcggc 91
>gb|AC135509.2| Mus musculus BAC clone RP24-448I12 from chromosome 17, complete sequence Length = 141307 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtagattgagcatggctgca 481 |||||||||||||||||||| Sbjct: 73535 gtagattgagcatggctgca 73516
>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence Length = 200074 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 tacaaaaaattctcacctcaggaa 415 |||||||||||||||||| ||||| Sbjct: 156837 tacaaaaaattctcacctgaggaa 156814
>gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome 16, complete sequence Length = 216783 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 49119 ttccccttcctcttctcctt 49138
>gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosome 18, complete sequence Length = 157430 Score = 40.1 bits (20), Expect = 7.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctttcgttttctgctcctc 78 ||||||||| || |||||||||||||||| |||||| Sbjct: 8406 ttccccttc-tcctctcctttcgttttctcctcctc 8372
>gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, complete sequence Length = 213032 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 88836 ttccccttcctcttctcctt 88817
>emb|AL683813.10| Human DNA sequence from clone RP11-1114A5 on chromosome X Contains the 5' end of the ARHGEF6 gene for Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6, a ribosomal protein L7 (RPL7) pseudogene, a RAN member RAS oncogene family pseudogene, a novel gene, the RNMX gene for RNA binding motif protein (X chromosome), the 5' end of a novel gene and two CpG islands, complete sequence Length = 148654 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 143546 ttccccttcctcttctcctt 143565
>emb|AL672294.10| Human DNA sequence from clone XX-53 on chromosome 1 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 37457 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 33817 ttccccttcctcttctcctt 33836
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcaaaaaactggaacagagc 300 |||||||||||||||||||| Sbjct: 2216601 tcaaaaaactggaacagagc 2216620
>emb|AL451163.8| Human DNA sequence from clone RP11-438G15 on chromosome 1, complete sequence Length = 72546 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atgtggaagctgcaaactgc 391 |||||||||||||||||||| Sbjct: 1891 atgtggaagctgcaaactgc 1910
>emb|AL450990.8| Human DNA sequence from clone RP11-199H2 on chromosome 1 Contains a voltage-dependent anion channel 1 (VDAC1) pseudogene, complete sequence Length = 119110 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atgtggaagctgcaaactgc 391 |||||||||||||||||||| Sbjct: 119001 atgtggaagctgcaaactgc 119020 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 atgtggaagctgcaaactgc 391 |||||||||||||||||||| Sbjct: 87685 atgtggaagctgcaaactgc 87666
>emb|AL450405.1| Human DNA sequence from clone RP11-632C17 on chromosome 6 Contains the gene for a novel protein similar to ribosomal protein L29 (RPL29) (probably a pseudogene), complete sequence Length = 70354 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 28787 ttccccttcctcttctcctt 28768
>emb|AL138960.16| Human DNA sequence from clone RP11-269C23 on chromosome 13, complete sequence Length = 144836 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 66656 ttccccttcctcttctcctt 66637
>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete sequence Length = 206618 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 139523 ttccccttcctcttctcctt 139504
>emb|Y14795.1|PMY14795 Pirellula marina dnaK gene, partial Length = 658 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccgttccccttcctcttctcctt 62 ||||||||||||| |||||||||| Sbjct: 208 tccgttccccttcttcttctcctt 185
>gb|AC157558.8| Mus musculus chromosome 8, clone RP24-367D19, complete sequence Length = 142704 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 aaaaattctcacctcaggaa 415 |||||||||||||||||||| Sbjct: 122213 aaaaattctcacctcaggaa 122232
>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168186 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 122960 ttccccttcctcttctcctt 122979
>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class II antigen (DSB), MHC class II antigen (DYA), MHC class II antigen (DYB), MHC class II antigen (DOB), transporter 2 ATP-binding cassette sub-family B (TAP2), proteasome subunit beta type 8 (PSMB8), transporter 1 ATP-binding cassette sub-family B (TAP1), proteosome subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC class II antigen (DMB), MHC class II antigen (DMA), bromodomain containing 2 (BRD2), MHC class II antigen (DOA), collagen type XI alpha 2 (COL11A2), retinoid X receptor beta (RXRB), solute carrier family 39 zinc transporter member 7 (HKE4), and hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes, complete cds; and ring finger protein 1 (RING1) gene, partial cds Length = 447010 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 cggccggagcagcagccagtcggc 141 |||||||||||||| ||||||||| Sbjct: 238960 cggccggagcagcatccagtcggc 238983
>gb|AC008703.6| Homo sapiens chromosome 5 clone CTB-76P12, complete sequence Length = 214187 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 ctcctttcgttttctgctcctccc 80 ||||||||||| |||||||||||| Sbjct: 121018 ctcctttcgttctctgctcctccc 120995
>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence Length = 185221 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 113498 ttccccttcctcttctcctt 113479
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ccccttcctcttctcctttc 64 |||||||||||||||||||| Sbjct: 1929749 ccccttcctcttctcctttc 1929768
>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence Length = 185522 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 110369 ttccccttcctcttctcctt 110388
>dbj|AK044276.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930005B19 product:unclassifiable, full insert sequence Length = 3352 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 3144 ttccccttcctcttctcctt 3125
>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence Length = 166122 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ccccttcctcttctcctttc 64 |||||||||||||||||||| Sbjct: 155759 ccccttcctcttctcctttc 155778
>gb|AY855164.1| Callithrix jacchus RPGR mRNA, partial cds Length = 1818 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 1461 ttccccttcctcttctcctt 1442
>emb|BX323545.11| Mouse DNA sequence from clone RP23-358N13 on chromosome 4, complete sequence Length = 47574 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttctcacctcaggaagctgc 420 |||||||||||||||||||| Sbjct: 17339 ttctcacctcaggaagctgc 17320
>emb|AL732322.10| Mouse DNA sequence from clone RP23-234H9 on chromosome X, complete sequence Length = 114453 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 aaaaattctcacctcaggaa 415 |||||||||||||||||||| Sbjct: 81198 aaaaattctcacctcaggaa 81217
>gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172497 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 gcttatgtggaagctgcaaa 387 |||||||||||||||||||| Sbjct: 108435 gcttatgtggaagctgcaaa 108454
>ref|XM_564458.1| Anopheles gambiae str. PEST ENSANGP00000029604 (ENSANGG00000023731), partial mRNA Length = 642 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cagcagccagtcggcagcga 146 |||||||||||||||||||| Sbjct: 33 cagcagccagtcggcagcga 52
>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence Length = 165608 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 tttccgttccccttcctcttctcctttc 64 ||||| |||||||||||| ||||||||| Sbjct: 137520 tttcctttccccttcctcctctcctttc 137547
>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200853 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ccccttcctcttctcctttc 64 |||||||||||||||||||| Sbjct: 83264 ccccttcctcttctcctttc 83283
>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence Length = 121483 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 cggccggagcagcagccagtcggc 141 |||||||||||||| ||||||||| Sbjct: 26209 cggccggagcagcacccagtcggc 26186
>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence Length = 197312 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 aaaaattctcacctcaggaa 415 |||||||||||||||||||| Sbjct: 188299 aaaaattctcacctcaggaa 188280
>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete sequence Length = 219714 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtagattgagcatggctgca 481 |||||||||||||||||||| Sbjct: 190227 gtagattgagcatggctgca 190208
>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence Length = 195319 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 90691 ttccccttcctcttctcctt 90710
>gb|AC164414.5| Mus musculus chromosome 1, clone RP24-75E15, complete sequence Length = 213369 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttccccttcctcttctcctt 62 |||||||||||||||||||| Sbjct: 167720 ttccccttcctcttctcctt 167701 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,246,211 Number of Sequences: 3902068 Number of extensions: 5246211 Number of successful extensions: 130030 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 129644 Number of HSP's gapped (non-prelim): 385 length of query: 541 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 518 effective length of database: 17,143,297,704 effective search space: 8880228210672 effective search space used: 8880228210672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)