ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence Length = 64224 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||| ||||| ||||||||| |||||| ||||||||||| ||| || || ||||| Sbjct: 19108 gcgtgctcgccgcacggtcgccggtgttcgacgcggagctcctgggcccgatgatggaga 19167 Query: 384 ccgccgcggagctcgtcaagatcgacggcatggagccggccatcttcgaggcgctcctcc 443 || ||||| | | || ||||| ||||| | ||||| ||| ||||||||||||||||| Sbjct: 19168 ccaccgcgccgtgcatcgagatccacggcgtcgagcccgccgccttcgaggcgctcctcc 19227 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 307 gttccgcgcctacaggcgcgtgctggccgctgggtcgccggcgttcgaggcggagctcct 366 |||||||||| || | |||||||||| || ||||||||| |||| |||||||||||| Sbjct: 4968 gttccgcgcccacgcgtgcgtgctggcggcgcggtcgccggtgttcagggcggagctcct 5027 Query: 367 cgg 369 ||| Sbjct: 5028 cgg 5030
>ref|NM_196558.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.14), mRNA Length = 1308 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 842 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 886
>ref|NM_196557.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.13), mRNA Length = 1149 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 662 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 706
>gb|AE011942.1| Xanthomonas axonopodis pv. citri str. 306, section 320 of 469 of the complete genome Length = 11334 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 403 gatcgacggcatggagccggccatc 427 ||||||||||||||||||||||||| Sbjct: 10364 gatcgacggcatggagccggccatc 10340
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14496960 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14496916 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14492459 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14492415 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14489916 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14489960 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagct 363 ||||||| ||||| ||||||||| ||||||||||||||| Sbjct: 14780580 gcgtgctcgccgcacggtcgccggtgttcgaggcggagct 14780619
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 111323 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 111279 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 106822 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 106778 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 104279 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 104323
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14505202 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14505158 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14500701 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14500657 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||||| |||| ||||||||||| ||||| ||| |||||||| Sbjct: 14498158 ggtcgccggtgttcaaggcggagctcttcggccagatgaaggaga 14498202 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagct 363 ||||||| ||||| ||||||||| ||||||||||||||| Sbjct: 14788821 gcgtgctcgccgcacggtcgccggtgttcgaggcggagct 14788860
>ref|XM_473963.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 48.1 bits (24), Expect = 0.031 Identities = 96/120 (80%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||| ||||| ||||||||| |||||| ||||||||||| ||| || || ||||| Sbjct: 629 gcgtgctcgccgcgcggtcgccggtgttcgacgcggagctcctgggcccgatgatggaga 688 Query: 384 ccgccgcggagctcgtcaagatcgacggcatggagccggccatcttcgaggcgctcctcc 443 || |||| | | || ||||| ||||| | ||||| ||| ||||||||||||||||| Sbjct: 689 ccaccgctccgtgcatcgagatccacggcgtcgagcccgccgccttcgaggcgctcctcc 748
>ref|NM_196620.1| Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.32), mRNA Length = 1086 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagct 363 ||||||| ||||| ||||||||| ||||||||||||||| Sbjct: 632 gcgtgctcgccgcacggtcgccggtgttcgaggcggagct 671
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 48.1 bits (24), Expect = 0.031 Identities = 96/120 (80%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||| ||||| ||||||||| |||||| ||||||||||| ||| || || ||||| Sbjct: 25039 gcgtgctcgccgcgcggtcgccggtgttcgacgcggagctcctgggcccgatgatggaga 25098 Query: 384 ccgccgcggagctcgtcaagatcgacggcatggagccggccatcttcgaggcgctcctcc 443 || |||| | | || ||||| ||||| | ||||| ||| ||||||||||||||||| Sbjct: 25099 ccaccgctccgtgcatcgagatccacggcgtcgagcccgccgccttcgaggcgctcctcc 25158 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 307 gttccgcgcctacaggcgcgtgctggccgctgggtcgccggcgttcgaggcggagctcct 366 |||||||||| || | |||||||||| || ||||||||| |||| |||||||||||| Sbjct: 9544 gttccgcgcccacgcgtgcgtgctggcggcgcggtcgccggtgttcagggcggagctcct 9603 Query: 367 cgg 369 ||| Sbjct: 9604 cgg 9606
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 48.1 bits (24), Expect = 0.031 Identities = 96/120 (80%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||| ||||| ||||||||| |||||| ||||||||||| ||| || || ||||| Sbjct: 185443 gcgtgctcgccgcgcggtcgccggtgttcgacgcggagctcctgggcccgatgatggaga 185502 Query: 384 ccgccgcggagctcgtcaagatcgacggcatggagccggccatcttcgaggcgctcctcc 443 || |||| | | || ||||| ||||| | ||||| ||| ||||||||||||||||| Sbjct: 185503 ccaccgctccgtgcatcgagatccacggcgtcgagcccgccgccttcgaggcgctcctcc 185562 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 307 gttccgcgcctacaggcgcgtgctggccgctgggtcgccggcgttcgaggcggagctcct 366 |||||||||| || | |||||||||| || ||||||||| |||| |||||||||||| Sbjct: 169948 gttccgcgcccacgcgtgcgtgctggcggcgcggtcgccggtgttcagggcggagctcct 170007 Query: 367 cgg 369 ||| Sbjct: 170008 cgg 170010
>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04, complete sequence Length = 155372 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagct 363 ||||||| ||||| ||||||||| ||||||||||||||| Sbjct: 105729 gcgtgctcgccgcacggtcgccggtgttcgaggcggagct 105768
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.031 Identities = 96/120 (80%) Strand = Plus / Plus Query: 324 gcgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggcgagacgaaggaga 383 ||||||| ||||| ||||||||| |||||| ||||||||||| ||| || || ||||| Sbjct: 31852173 gcgtgctcgccgcgcggtcgccggtgttcgacgcggagctcctgggcccgatgatggaga 31852232 Query: 384 ccgccgcggagctcgtcaagatcgacggcatggagccggccatcttcgaggcgctcctcc 443 || |||| | | || ||||| ||||| | ||||| ||| ||||||||||||||||| Sbjct: 31852233 ccaccgctccgtgcatcgagatccacggcgtcgagcccgccgccttcgaggcgctcctcc 31852292 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 307 gttccgcgcctacaggcgcgtgctggccgctgggtcgccggcgttcgaggcggagctcct 366 |||||||||| || | |||||||||| || ||||||||| |||| |||||||||||| Sbjct: 31836678 gttccgcgcccacgcgtgcgtgctggcggcgcggtcgccggtgttcagggcggagctcct 31836737 Query: 367 cgg 369 ||| Sbjct: 31836738 cgg 31836740
>ref|XM_473960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 307 gttccgcgcctacaggcgcgtgctggccgctgggtcgccggcgttcgaggcggagctcct 366 |||||||||| || | |||||||||| || ||||||||| |||| |||||||||||| Sbjct: 543 gttccgcgcccacgcgtgcgtgctggcggcgcggtcgccggtgttcagggcggagctcct 602 Query: 367 cgg 369 ||| Sbjct: 603 cgg 605
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 tcgtcaagatcgacggcatgga 417 |||||||||||||||||||||| Sbjct: 1492057 tcgtcaagatcgacggcatgga 1492036
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 529 gatgcacagcctgatggcgatg 550 |||||||||||||||||||||| Sbjct: 3284338 gatgcacagcctgatggcgatg 3284359
>gb|AE011917.1| Xanthomonas axonopodis pv. citri str. 306, section 295 of 469 of the complete genome Length = 11013 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cgcgcctacaggcgcgtgctggccgc 336 |||||| ||||||||||||||||||| Sbjct: 5432 cgcgccgacaggcgcgtgctggccgc 5457
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 gaggacgaggagggcgcggacg 281 |||||||||||||||||||||| Sbjct: 1268364 gaggacgaggagggcgcggacg 1268343 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ggacgaggagggcgcggacg 281 |||||||||||||||||||| Sbjct: 1268347 ggacgaggagggcgcggacg 1268328
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.49 Identities = 40/46 (86%) Strand = Plus / Plus Query: 325 cgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggc 370 |||||| ||||| ||||||||| |||| |||||||||||||||| Sbjct: 25603678 cgtgctcgccgcgcggtcgccggtgttcagggcggagctcctcggc 25603723 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcgccggcgttcgaggcggagctcctcgg 369 ||||||| |||| |||||||||||||||| Sbjct: 25977461 tcgccggtgttcaaggcggagctcctcgg 25977433
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 44.1 bits (22), Expect = 0.49 Identities = 40/46 (86%) Strand = Plus / Plus Query: 325 cgtgctggccgctgggtcgccggcgttcgaggcggagctcctcggc 370 |||||| ||||| ||||||||| |||| |||||||||||||||| Sbjct: 90369 cgtgctcgccgcgcggtcgccggtgttcagggcggagctcctcggc 90414
>ref|NM_209769.1| Eremothecium gossypii ADR320Cp (ADR320C), mRNA Length = 831 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 gaggacgaggagggcgcggacg 281 |||||||||||||||||||||| Sbjct: 544 gaggacgaggagggcgcggacg 565 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ggacgaggagggcgcggacg 281 |||||||||||||||||||| Sbjct: 561 ggacgaggagggcgcggacg 580
>ref|XM_483391.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 341 tcgccggcgttcgaggcggagctcctcgg 369 ||||||| |||| |||||||||||||||| Sbjct: 577 tcgccggtgttcaaggcggagctcctcgg 605
>ref|XM_521719.1| PREDICTED: Pan troglodytes similar to ASCL2 protein (LOC466319), mRNA Length = 1029 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 749 cgctgcagcgcctgctggccg 769
>ref|NM_005170.2| Homo sapiens achaete-scute complex-like 2 (Drosophila) (ASCL2), mRNA Length = 1864 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 922 cgctgcagcgcctgctggccg 942
>gb|AE007258.1| Sinorhizobium meliloti 1021 plasmid pSymA section 64 of 121 of the complete plasmid sequence Length = 11835 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 495 tgcagcgcctgctggccgcggccga 519 ||||||||||||||||||| ||||| Sbjct: 2685 tgcagcgcctgctggccgctgccga 2709
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 403 gatcgacggcatggagccggccatc 427 |||||||||| |||||||||||||| Sbjct: 3580519 gatcgacggcctggagccggccatc 3580495
>gb|BC057801.1| Homo sapiens achaete-scute complex-like 2 (Drosophila), mRNA (cDNA clone IMAGE:30337628), partial cds Length = 1500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 558 cgctgcagcgcctgctggccg 578
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 gcgagccgctgcagcgcctgc 506 ||||||||||||||||||||| Sbjct: 401826 gcgagccgctgcagcgcctgc 401806
>gb|U77629.1|HSU77629 Homo sapiens Achaete-Scute homologue 2 (ASCL2) gene, complete cds Length = 1140 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 846 cgctgcagcgcctgctggccg 866
>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence Length = 141449 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 117066 cgctgcagcgcctgctggccg 117086
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 ggccgctgggtcgccggcgtt 351 ||||||||||||||||||||| Sbjct: 95419 ggccgctgggtcgccggcgtt 95439
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 109214 gtcagcatgctggaggacgag 109194
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 403 gatcgacggcatggagccggccatc 427 |||||||||| |||||||||||||| Sbjct: 1252114 gatcgacggcctggagccggccatc 1252138
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187555 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 163819 gtcagcatgctggaggacgag 163799
>emb|CR603858.1| full-length cDNA clone CS0DI049YF01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1454 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 539 cgctgcagcgcctgctggccg 559
>gb|AC110059.3| Homo sapiens chromosome 11, clone CTD2-3165C9, complete sequence Length = 49390 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 4128 cgctgcagcgcctgctggccg 4148
>gb|AY026946.3| Streptomyces venezuelae adenylating enzyme CmlK, alkylhalidase CmlS, and aldo/keto reductase CmlT genes, complete cds; and unknown genes Length = 6213 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 tggaggacgaggagggcgcgg 278 ||||||||||||||||||||| Sbjct: 6062 tggaggacgaggagggcgcgg 6042
>ref|NM_079918.2| Drosophila melanogaster farinelli CG7919-RA (fan), mRNA Length = 880 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 611 gtcagcatgctggaggacgag 631
>gb|AY084113.1| Drosophila melanogaster AT11025 full insert cDNA Length = 896 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 612 gtcagcatgctggaggacgag 632
>gb|AF442769.1|AF442769 Homo sapiens achaete-scute associated protein and achaete-scute-like 2 genes, complete cds Length = 3500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 1859 cgctgcagcgcctgctggccg 1879
>gb|AF280798.1|AF280798 Drosophila melanogaster farinelli (fan) gene, complete cds Length = 1990 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 1392 gtcagcatgctggaggacgag 1412
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcgccggcgttcgaggcggagctcctcgg 369 ||||||| |||| |||||||||||||||| Sbjct: 13022 tcgccggtgttcaaggcggagctcctcgg 12994
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcgccggcgttcgaggcggagctcctcgg 369 ||||||| |||| |||||||||||||||| Sbjct: 62338 tcgccggtgttcaaggcggagctcctcgg 62310
>gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome Length = 52797 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 ctgctggccgcggccgaccgg 523 ||||||||||||||||||||| Sbjct: 48316 ctgctggccgcggccgaccgg 48296
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gtcagcatgctggaggacgag 268 ||||||||||||||||||||| Sbjct: 58248 gtcagcatgctggaggacgag 58268
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 403 gatcgacggcatggagccggccatc 427 |||||||||| |||||||||||||| Sbjct: 1275878 gatcgacggcctggagccggccatc 1275902
>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence Length = 140977 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 24388 cgctgcagcgcctgctggccg 24368
>gb|BC028140.1| Homo sapiens achaete-scute complex-like 2 (Drosophila), mRNA (cDNA clone IMAGE:5215112) Length = 1686 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 cgctgcagcgcctgctggccg 512 ||||||||||||||||||||| Sbjct: 922 cgctgcagcgcctgctggccg 942
>gb|AY536011.1| Sinorhizobium meliloti strain JJ1C10 plasmid pSymA, partial sequence Length = 27412 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 495 tgcagcgcctgctggccgcggccga 519 ||||||||||||||||||| ||||| Sbjct: 26879 tgcagcgcctgctggccgctgccga 26903
>gb|DQ214825.1| Taeniopygia guttata clone 0061P0008D06 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 3-like mRNA, complete sequence Length = 1195 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 42 ggaggacgaggagggcgcgg 23
>gb|DQ214824.1| Taeniopygia guttata clone 0058P0054D10 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 2-like mRNA, complete sequence Length = 1271 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 96 ggaggacgaggagggcgcgg 77
>gb|DQ214823.1| Taeniopygia guttata clone 0058P0009D04 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 1-like mRNA, complete sequence Length = 1273 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 64 ggaggacgaggagggcgcgg 45
>gb|DQ214822.1| Taeniopygia guttata clone 0058P0018A05 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 1-like mRNA, complete sequence Length = 1303 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 91 ggaggacgaggagggcgcgg 72
>gb|DQ214821.1| Taeniopygia guttata clone 0058P0058E05 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 1-like mRNA, complete sequence Length = 1283 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 73 ggaggacgaggagggcgcgg 54
>gb|DQ214820.1| Taeniopygia guttata clone 0065P0027H08 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 1-like mRNA, complete sequence Length = 1313 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 105 ggaggacgaggagggcgcgg 86
>gb|DQ214819.1| Taeniopygia guttata clone 0058P0050G03 3-monooxgenase/tryptophan 5-monooxgenase activation protein gamma polypeptide variant 1-like mRNA, complete sequence Length = 1283 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 73 ggaggacgaggagggcgcgg 54
>gb|DQ213113.1| Taeniopygia guttata clone 0058P0020A09 mRNA sequence Length = 495 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggaggacgaggagggcgcgg 278 |||||||||||||||||||| Sbjct: 70 ggaggacgaggagggcgcgg 51
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gctgcagcgcctgctggccg 512 |||||||||||||||||||| Sbjct: 2580669 gctgcagcgcctgctggccg 2580650
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 gccgctgcagcgcctgctgg 509 |||||||||||||||||||| Sbjct: 552981 gccgctgcagcgcctgctgg 553000
>ref|XM_953989.1| Neurospora crassa OR74A hypothetical protein (NCU09172.1) partial mRNA Length = 2058 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gaggacgaggagggcgcgga 279 |||||||||||||||||||| Sbjct: 882 gaggacgaggagggcgcgga 863
>ref|XM_331563.1| Neurospora crassa OR74A hypothetical protein (NCU09172.1) partial mRNA Length = 2058 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gaggacgaggagggcgcgga 279 |||||||||||||||||||| Sbjct: 882 gaggacgaggagggcgcgga 863
>gb|CP000355.1| Ralstonia metallidurans CH34 plasmid pMOL28, complete sequence Length = 171459 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 cgtcaagatcgacggcatgg 416 |||||||||||||||||||| Sbjct: 35672 cgtcaagatcgacggcatgg 35653
>ref|XM_842997.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0393) partial mRNA Length = 1803 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 gccgctgcagcgcctgctgg 509 |||||||||||||||||||| Sbjct: 439 gccgctgcagcgcctgctgg 458
>gb|AF531961.1| Drosophila yakuba CG7919 mRNA, partial cds Length = 687 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tcagcatgctggaggacgag 268 |||||||||||||||||||| Sbjct: 491 tcagcatgctggaggacgag 510
>gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0016O23, complete sequence Length = 149400 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 89906 ggtcgccggtgttcagggcggagctcctcggc 89937
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 79721 ggtcgccggtgttcatggcggagctcctcggc 79690
>emb|X90708.2|AEPARREPG Ralstonia metallidurans CH34 plasmid pMOL28 Length = 171461 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cgtcaagatcgacggcatgg 416 |||||||||||||||||||| Sbjct: 109064 cgtcaagatcgacggcatgg 109083
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccgcggccgaccggtacgg 528 |||||||||||||||||||| Sbjct: 293753 gccgcggccgaccggtacgg 293772
>emb|AJ245811.1|RSO245811 Ralstonia solanacearum DNA for hrp gene locus Length = 23407 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 cgagccgctgcagcgcctgctggc 510 ||||| |||||||||||||||||| Sbjct: 1551 cgagctgctgcagcgcctgctggc 1528
>gb|AC107030.3| Homo sapiens 3 BAC RP11-603J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171343 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcggtacctgcgctggaagt 173 |||||||||||||||||||| Sbjct: 68757 gcggtacctgcgctggaagt 68776
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 cggcagcgagccgctgcagcgcct 504 ||||||||||||||||| |||||| Sbjct: 4644793 cggcagcgagccgctgctgcgcct 4644816
>gb|AC151608.2| Emiliania huxleyi clone JGIACCU-13E1, complete sequence Length = 30907 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cttcgaggcgctcctccact 446 |||||||||||||||||||| Sbjct: 23067 cttcgaggcgctcctccact 23048
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cagcgtcgatggcgcgccgccggg 231 ||||||||||| |||||||||||| Sbjct: 2392674 cagcgtcgatgccgcgccgccggg 2392651
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gtcaagatcgacggcatgga 417 |||||||||||||||||||| Sbjct: 1534233 gtcaagatcgacggcatgga 1534214
>gb|AC017015.4|AC017015 Homo sapiens BAC clone RP11-142L1 from 3, complete sequence Length = 163509 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcggtacctgcgctggaagt 173 |||||||||||||||||||| Sbjct: 155148 gcggtacctgcgctggaagt 155167
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 23901091 ggtcgccggtgttcagggcggagctcctcggc 23901122 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 23307254 ggtcgccggtgttcatggcggagctcctcggc 23307285
>gb|AE004688.1| Pseudomonas aeruginosa PAO1, section 249 of 529 of the complete genome Length = 10623 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 gcagcgcctgctggccgcggccga 519 |||||||||||||||||| ||||| Sbjct: 9636 gcagcgcctgctggccgctgccga 9613
>ref|XM_226612.3| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22344 (predicted) (LOC309928), mRNA Length = 2631 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 catgctggaggacgaggagg 272 |||||||||||||||||||| Sbjct: 1665 catgctggaggacgaggagg 1684
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gatgttcgtcgtgggcggcc 302 |||||||||||||||||||| Sbjct: 2312459 gatgttcgtcgtgggcggcc 2312440
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ctgcagcgcctgctggccgc 513 |||||||||||||||||||| Sbjct: 2478585 ctgcagcgcctgctggccgc 2478566
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 gccgctgcagcgcctgctgg 509 |||||||||||||||||||| Sbjct: 2820256 gccgctgcagcgcctgctgg 2820275
>gb|AE005167.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 28 of 32 of the complete genome Length = 11163 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgccggcgttcgaggcggag 361 |||||||||||||||||||| Sbjct: 8831 cgccggcgttcgaggcggag 8812
>dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B01, full insert sequence Length = 1358 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 714 ggtcgccggtgttcatggcggagctcctcggc 745
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 cgagccgctgcagcgcctgctggc 510 ||||| |||||||||||||||||| Sbjct: 1085767 cgagctgctgcagcgcctgctggc 1085744
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 72633 ggtcgccggtgttcatggcggagctcctcggc 72602
>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete sequence Length = 70311 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 65328 ggtcgccggtgttcatggcggagctcctcggc 65297
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 24212760 ggtcgccggtgttcagggcggagctcctcggc 24212791 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 339 ggtcgccggcgttcgaggcggagctcctcggc 370 ||||||||| |||| |||||||||||||||| Sbjct: 23617164 ggtcgccggtgttcatggcggagctcctcggc 23617195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,189,778 Number of Sequences: 3902068 Number of extensions: 3189778 Number of successful extensions: 75580 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73044 Number of HSP's gapped (non-prelim): 2535 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
