ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31f04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence Length = 1296 Score = 280 bits (141), Expect = 5e-72 Identities = 420/513 (81%) Strand = Plus / Plus Query: 61 atggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgaggaa 120 ||||||||||||||||||||| |||| |||||||| || ||||| || ||||| || | Sbjct: 49 atggaggcgctcgtggtgcggcagctgggcgatcccaccctgccccctggcggtgaagcc 108 Query: 121 tctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacctca 180 || ||||| || || ||||| || || | || | || ||| |||| |||||||| | Sbjct: 109 tccccgttcgccgcggtctctggggatcacccagtgccggagatctcatcgccgacggct 168 Query: 181 gtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagggc 240 || || ||||| || ||||||||||||||||| ||||| |||||||| || || |||||| Sbjct: 169 gtccgagtgcgagtcgcggcgaccagcctcaacttcgccacgttcctccaggtgcagggc 228 Query: 241 aagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcgtc 300 |||||||||||||| |||||||| || |||||||| || ||||||||| | ||||| ||| Sbjct: 229 aagtaccaggagcggcccccgcttccgttcgtgcctggatccgactactctggcgtggtc 288 Query: 301 gacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcgcc 360 ||||| ||||| |||||||| || | || || ||||||||||||||||||||| | || Sbjct: 289 gacgcagtcggtcccggcgtgcgtgggctccggcccggcgaccgcgtctgctcctttacc 348 Query: 361 agcgtcgggtccttcgccgagtttatcgtcgccgacgagaaggcactatacgtagtccct 420 || |||| |||||||| || || ||||||||||| |||||| |||| | || ||| Sbjct: 349 ggcctcggttccttcgctgacttcatcgtcgccgaggagaagcagctatttttggtgcct 408 Query: 421 gatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcatttg 480 |||||||| ||||||||| | ||||| || ||||| || |||||||||||||| |||||| Sbjct: 409 gatggatgcgacctggtcacagctggggctttaccagttgcatttggtacatcacatttg 468 Query: 481 gcccttgcccacagagctcaactaaaggctggtcaggtgctacttgtacttggtgctgcc 540 ||||||| ||| |||| ||| | |||||||| |||||||||||||| ||||||||||| Sbjct: 469 gcccttgttcaccgagcccaattgaaggctggccaggtgctacttgttcttggtgctgct 528 Query: 541 ggcggtgttggggtatctgctgtacagatagga 573 || ||||| |||| ||||||||| || |||||| Sbjct: 529 ggtggtgtcggggcatctgctgtgcaaatagga 561
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 206 bits (104), Expect = 6e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 59 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 118 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 3317 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 3376 Query: 119 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 178 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 3377 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 3436 Query: 179 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 238 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 3437 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 3496 Query: 239 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 298 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 3497 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 3556 Query: 299 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 358 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 3557 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 3616 Query: 359 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 402 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 3617 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 3660 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Plus Query: 418 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 477 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 4702 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 4761 Query: 478 ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 520 |||||||||| ||||||||| ||||||||||||| ||||||| Sbjct: 4762 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 4804 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 514 caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 573 |||||||||||||| || |||||||| || ||||| |||| |||||||||||| |||||| Sbjct: 6987 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 7046
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 206 bits (104), Expect = 6e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 59 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 118 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 133864 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 133923 Query: 119 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 178 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 133924 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 133983 Query: 179 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 238 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 133984 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 134043 Query: 239 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 298 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 134044 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 134103 Query: 299 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 358 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 134104 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 134163 Query: 359 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 402 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 134164 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 134207 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Plus Query: 418 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 477 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 135249 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 135308 Query: 478 ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 520 |||||||||| ||||||||| ||||||||||||| ||||||| Sbjct: 135309 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 135351 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 514 caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 573 |||||||||||||| || |||||||| || ||||| |||| |||||||||||| |||||| Sbjct: 137534 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 137593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 206 bits (104), Expect = 6e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 59 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 118 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 14274531 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 14274590 Query: 119 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 178 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 14274591 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 14274650 Query: 179 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 238 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 14274651 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 14274710 Query: 239 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 298 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 14274711 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 14274770 Query: 299 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 358 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 14274771 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 14274830 Query: 359 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 402 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 14274831 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 14274874 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Plus Query: 418 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 477 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 14275916 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 14275975 Query: 478 ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 520 |||||||||| ||||||||| ||||||||||||| ||||||| Sbjct: 14275976 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 14276018 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 514 caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 573 |||||||||||||| || |||||||| || ||||| |||| |||||||||||| |||||| Sbjct: 14278201 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 14278260
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 236 agggcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcg 295 ||||||||||||||| |||||| ||||||||||||||||| || |||| | |||||||| Sbjct: 51546 agggcaagtaccaggcgcgcccgccgctgcccttcgtgcccggcgccgagttcgccggcg 51487 Query: 296 tcgtcga 302 ||||||| Sbjct: 51486 tcgtcga 51480
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 290 ccggcgtcgtcgacgccgtcggc 312 ||||||||||||||||||||||| Sbjct: 224823 ccggcgtcgtcgacgccgtcggc 224845
>gb|AY644464.1| Saccharum officinarum mitochondrial uncoupling protein 5 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1532 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 284 actacgccggcgtcgtcgacgccgtcggcc 313 ||||||||||||||| ||||||| |||||| Sbjct: 829 actacgccggcgtcggcgacgccatcggcc 858
>gb|AY644463.1| Saccharum officinarum mitochondrial uncoupling protein 4 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1575 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 284 actacgccggcgtcgtcgacgccgtcggcc 313 ||||||||||||||| ||||||| |||||| Sbjct: 882 actacgccggcgtcggcgacgccatcggcc 911
>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence Length = 184338 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 291 cggcgtcgtcgacgccgtcggc 312 |||||||||||||||||||||| Sbjct: 57218 cggcgtcgtcgacgccgtcggc 57239
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 291 cggcgtcgtcgacgccgtcggccccggcgt 320 |||||||||||| |||||||||||||||| Sbjct: 761732 cggcgtcgtcgaatccgtcggccccggcgt 761703
>ref|XM_964159.1| PREDICTED: Tribolium castaneum similar to Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1) (LOC657717), mRNA Length = 7833 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcggc 312 ||||||||||||||||| ||||||| Sbjct: 4806 cgccggcgtcgtcgacgacgtcggc 4782
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 cgactacgccggcgtcgtcga 302 ||||||||||||||||||||| Sbjct: 5170274 cgactacgccggcgtcgtcga 5170294 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 tgctgccggcggtgttgggg 553 |||||||||||||||||||| Sbjct: 3610207 tgctgccggcggtgttgggg 3610188
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 237 gggcaagtaccaggagcgccccccgctgcccttcgtg 273 |||| ||||||||| ||||| ||||||||||||||| Sbjct: 264883 gggccagtaccaggttcgcccgccgctgcccttcgtg 264919
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 gagtttatcgtcgccgacgag 399 ||||||||||||||||||||| Sbjct: 1857843 gagtttatcgtcgccgacgag 1857823 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 caacgctgccgcccggcggcg 115 ||||||||||||||||||||| Sbjct: 317856 caacgctgccgcccggcggcg 317876
>emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chromosome X, complete sequence Length = 226126 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 507 ggctggtcaggtgctacttgtactt 531 |||||||||||||||| |||||||| Sbjct: 21316 ggctggtcaggtgctaattgtactt 21292
>gb|AY642232.1| Plasmodium knowlesi Pk1(B+)1+ clone 4 SICAvar mRNA, partial sequence Length = 3799 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cggcgtcgtcgacgccgtcg 310 |||||||||||||||||||| Sbjct: 1072 cggcgtcgtcgacgccgtcg 1091
>ref|NM_197856.1| Oryza sativa (japonica cultivar-group) putative carnitine/acylcarnitine translocase (OSJNBa0003O19.7), mRNA Length = 1580 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 tacgccggcgtcgtcgacgccgtc 309 |||||||||| ||||||||||||| Sbjct: 214 tacgccggcgccgtcgacgccgtc 237
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein (OSJNBb0015I11.17), mRNA Length = 1110 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcgg 311 |||||||| ||||||||||||||| Sbjct: 484 cgccggcgacgtcgacgccgtcgg 461
>ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase (OSJNBa0001K12.13), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 tcgtcgacgccgtcggccccggcg 319 |||||||||||||||||| ||||| Sbjct: 1235 tcgtcgacgccgtcggccgcggcg 1258
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 289 gccggcgtcgtcgacgccgtcggccccggcgt 320 |||||||| ||||| || |||||||||||||| Sbjct: 1858024 gccggcgtggtcgaagcggtcggccccggcgt 1858055
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 tggtgctgccggcggtgttg 550 |||||||||||||||||||| Sbjct: 730351 tggtgctgccggcggtgttg 730370
>ref|XM_955886.1| Neurospora crassa OR74A hypothetical protein (NCU08849.1) partial mRNA Length = 801 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 atccgaacctcctccagggt 41 |||||||||||||||||||| Sbjct: 152 atccgaacctcctccagggt 171
>ref|XM_331240.1| Neurospora crassa OR74A hypothetical protein (NCU08849.1) partial mRNA Length = 801 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 atccgaacctcctccagggt 41 |||||||||||||||||||| Sbjct: 152 atccgaacctcctccagggt 171
>gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome Length = 25260 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cccccgctgcccttcgtgcc 275 |||||||||||||||||||| Sbjct: 24720 cccccgctgcccttcgtgcc 24701
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgtcgtcgacgccgtcggcc 313 |||||||||||||||||||| Sbjct: 159813 cgtcgtcgacgccgtcggcc 159794
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gtgctacttgtacttggtgc 536 |||||||||||||||||||| Sbjct: 79463 gtgctacttgtacttggtgc 79444
>emb|AL670004.1|NC5E6 Neurospora crassa DNA linkage group V Cosmid contig 5E6 Length = 119882 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 atccgaacctcctccagggt 41 |||||||||||||||||||| Sbjct: 107896 atccgaacctcctccagggt 107877
>emb|AJ630120.2| Hordeum vulgare subsp. vulgare mRNA for C2 domain-containing protein, clone Chromi12 Length = 1274 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 acgccggcgtcgtcgacgccgtcg 310 |||||||||||||||||| ||||| Sbjct: 403 acgccggcgtcgtcgacgacgtcg 380
>gb|AC090041.13| Homo sapiens 12 BAC RP11-239F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108979 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tggagcattacctgtggcat 463 |||||||||||||||||||| Sbjct: 95772 tggagcattacctgtggcat 95753
>gb|DQ397840.1| Cenarchaeum symbiosum clone C05D01, complete sequence Length = 37104 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cgctgccgcccggcggcgag 117 |||||||||||||||||||| Sbjct: 31529 cgctgccgcccggcggcgag 31510
>gb|DQ397593.2| Cenarchaeum symbiosum clone C03B12, complete sequence Length = 38618 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cgctgccgcccggcggcgag 117 |||||||||||||||||||| Sbjct: 18853 cgctgccgcccggcggcgag 18872
>gb|DQ397567.1| Cenarchaeum symbiosum clone C07B06, complete sequence Length = 41363 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cgctgccgcccggcggcgag 117 |||||||||||||||||||| Sbjct: 40955 cgctgccgcccggcggcgag 40936
>gb|AE012140.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 48 of 460 of the complete genome Length = 13420 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 tgcgcgtggcggcgaccagcctca 211 |||||||||||||| ||||||||| Sbjct: 11794 tgcgcgtggcggcgcccagcctca 11771
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete sequence Length = 144724 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 tcgtcgacgccgtcggccccggcg 319 |||||||||||||||||| ||||| Sbjct: 87077 tcgtcgacgccgtcggccgcggcg 87100
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcgg 311 |||||||| ||||||||||||||| Sbjct: 107714 cgccggcgacgtcgacgccgtcgg 107691
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 tgcgcgtggcggcgaccagcctca 211 |||||||||||||| ||||||||| Sbjct: 529915 tgcgcgtggcggcgcccagcctca 529892
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 tacgccggcgtcgtcgacgccgtc 309 |||||||||| ||||||||||||| Sbjct: 22259842 tacgccggcgccgtcgacgccgtc 22259819 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcgg 311 |||||||| ||||||||||||||| Sbjct: 20706262 cgccggcgacgtcgacgccgtcgg 20706239 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tcgtcgacgccgtcggccccggcg 319 |||||||||||||||||| ||||| Sbjct: 17105259 tcgtcgacgccgtcggccgcggcg 17105236
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 tacgccggcgtcgtcgacgccgtc 309 |||||||||| ||||||||||||| Sbjct: 77085 tacgccggcgccgtcgacgccgtc 77062
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 gccggcgtcgtcgacgccgtcggccccg 316 |||||||| |||||||||||||| |||| Sbjct: 5918543 gccggcgtggtcgacgccgtcgggcccg 5918570
>gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the complete genome Length = 12130 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 acgccggcgtcgtcgacgccgtcg 310 |||||| ||||||||||||||||| Sbjct: 10324 acgccgccgtcgtcgacgccgtcg 10347
>gb|AE005054.1| Halobacterium sp. NRC-1 section 85 of 170 of the complete genome Length = 10173 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cggcgtcgtcgacgccgtcg 310 |||||||||||||||||||| Sbjct: 4128 cggcgtcgtcgacgccgtcg 4109
>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full insert sequence Length = 1488 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcgg 311 |||||||| ||||||||||||||| Sbjct: 160 cgccggcgacgtcgacgccgtcgg 137
>gb|AF181495.1|AF181495 Lilium longiflorum clone pLZH47 repetitive sequence Length = 756 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 atccgaacctcctccagggt 41 |||||||||||||||||||| Sbjct: 543 atccgaacctcctccagggt 524
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 282 cgactacgccggcgtcgtcgacgccgtc 309 |||| |||||||||||||| |||||||| Sbjct: 2278755 cgacgacgccggcgtcgtcaacgccgtc 2278782
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 tacgccggcgtcgtcgacgccgtc 309 |||||||||| ||||||||||||| Sbjct: 22271910 tacgccggcgccgtcgacgccgtc 22271887 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgccggcgtcgtcgacgccgtcgg 311 |||||||| ||||||||||||||| Sbjct: 20717534 cgccggcgacgtcgacgccgtcgg 20717511 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tcgtcgacgccgtcggccccggcg 319 |||||||||||||||||| ||||| Sbjct: 17114299 tcgtcgacgccgtcggccgcggcg 17114276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,348,081 Number of Sequences: 3902068 Number of extensions: 3348081 Number of successful extensions: 63498 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62418 Number of HSP's gapped (non-prelim): 1080 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
