>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 29.3 bits (64), Expect(2) = 0.11
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 550 AGNRGKPGHPQSPGHRAAARWQPSRHPPPAG 458
           AGN G PG P  PG   A+       P PAG
Sbjct: 194 AGNDGAPGAPGGPGEPGASEQGGPGEPGPAG 224



 Score = 25.0 bits (53), Expect(2) = 0.11
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 378 SGPGGCRHPVANDDAAAQSLPPPAQDRRHLRAPPGAS 268
           +GP G   P  ND A     P PA      + PPGA+
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGP----KGPPGAA 255

>NAP5_HUMAN (O14513) Nck-associated protein 5 (NAP-5) (Fragment)|
          Length = 416

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 562 CRPDAGNRGK-PGHPQSPGHRAAARWQPSRHPPPAGRTAATSREPR*PMTCRRPAKTQM 389
           C   AG RG+ P  PQSPG   +   +PS   PPA   ++T  +P  P+  + P K+ +
Sbjct: 256 CGSGAGARGEIPSPPQSPGRSVSLLARPSYDYPPA--PSSTKSKPGSPVNSKDPFKSPL 312

>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 523 PQSPGHRAAARWQPSRHPPPAGRTA---ATSREPR*PMTCRRPAKTQMG 386
           P+SP  RAAA   P+ H PP  R A   A   EPR P   R+  +   G
Sbjct: 445 PESPRARAAAAQPPTEHGPPPPRPAPGPAEPPEPRVPEPLRKQGRLDPG 493

>PROP1_BOVIN (Q8MJI9) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = -2

Query: 562 CRPDAGNRGKPGHPQSPGHRA----AARWQPSRHPPPAGRTAATSREPR*PMTCRRP 404
           C P   NR  P  P +    A    +  W P+ HP PAG  A     P  P++   P
Sbjct: 166 CFPHPYNRALPSQPSTGSSFARPYQSEDWYPNLHPTPAGHLACPPPPPMLPLSLEPP 222

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
 Frame = -2

Query: 562 CRPDAGNRG---KPGHPQSPGHRAAARWQPSRHPPPAGR-----------TAATSREPR* 425
           C+PDA ++    +PG P S G+    R  P   PP  G            T  +S EP  
Sbjct: 336 CQPDAADKASVLEPGRPASAGNALKGRVPPGDTPPGNGSGPRHINDSPFGTLPSSAEP-- 393

Query: 424 PMTCRRPAKTQ 392
           P+T  RP  ++
Sbjct: 394 PLTALRPGGSE 404

>PROP1_PIG (Q9GLL9) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
 Frame = -2

Query: 562 CRPDAGNRGKPGHPQSPG----HRAAARWQPSRHPPPAGRTAATSREPR*PMTCRRP 404
           C P   N   P  P + G    H  +  W P+ HP P G        P  P++   P
Sbjct: 166 CFPHPYNHALPSQPSTGGSFARHPQSEDWYPTLHPTPTGHLPCPPAPPVLPLSLEPP 222

>CD2_HUMAN (P06729) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte
           receptor) (Rosette receptor)
          Length = 351

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -2

Query: 523 PQSPGHRAAARWQPSRHPPPAGRTAATSREPR*PMTCRRPAKTQMGP 383
           P  PGHR+ A   PS  PPP G       + R P         Q GP
Sbjct: 283 PPPPGHRSQA---PSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGP 326

>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 27.3 bits (59), Expect(2) = 2.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 556 PDAGNRGK----PGHPQSPGHRAAARWQPSRHPP--PAGRTAATSREPR*P 422
           P  GN+ +    PG PQ P  +  ++ Q +R PP  P G        P+ P
Sbjct: 306 PQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGPPQQEGNNPQGP 356



 Score = 22.3 bits (46), Expect(2) = 2.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 354 PVANDDAAAQSLPPPAQDRRHLRAPPGASPSR 259
           P A  +      PP  Q +   R P G  PSR
Sbjct: 358 PPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 389

>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
 Frame = -2

Query: 562 CRPDAGNRG---KPGHPQSPGHRAAARWQPSRHPPPAGR-----------TAATSREPR* 425
           C+PDA ++    +PG P S G+    R  P   PP  G            T   S EP  
Sbjct: 336 CQPDAADKASVLEPGRPASAGNALKGRVPPGDTPPGNGSGPRHINDSPFGTLPGSAEP-- 393

Query: 424 PMTCRRPAKTQ 392
           P+T  RP  ++
Sbjct: 394 PLTALRPGGSE 404

>KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12|
          Length = 642

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 523 PQSPGHRAAARWQPSRHPPPAGRTAATSRE 434
           P++PGH + + W P   PPP+  +A   RE
Sbjct: 527 PEAPGHISQSVWPPPWAPPPSPGSAKPPRE 556

>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
 Frame = -2

Query: 562 CRPDAGNRG---KPGHPQSPGHRAAARWQPSRHPPPAGR-----------TAATSREPR* 425
           C+PDA ++    +PG P S G+    R  P   PP  G            T   S EP  
Sbjct: 336 CQPDAADKASVLEPGRPASAGNALKGRVPPGDSPPGNGSGPRHINDSPFGTLPGSAEP-- 393

Query: 424 PMTCRRP 404
           P+T  RP
Sbjct: 394 PLTAVRP 400

>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
 Frame = -2

Query: 562 CRPDAGNRG---KPGHPQSPGHRAAARWQPSRHPPPAGR-----------TAATSREPR* 425
           C+PDA ++    +PG P S G+    R  P   PP  G            T   S EP  
Sbjct: 336 CQPDAADKASVLEPGRPASAGNALKGRVPPGDSPPGNGSGPRHINDSPFGTLPGSAEP-- 393

Query: 424 PMTCRRP 404
           P+T  RP
Sbjct: 394 PLTAVRP 400

>PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
 Frame = -2

Query: 562 CRPDAGNRGKPGHPQSPGHRAAAR----WQPSRHPPPAGRTAATSREPR*PMTCRRP 404
           C P   N   P  P + G  A       W P+ HPPP G           P++   P
Sbjct: 166 CFPHPYNHALPSQPSTGGSFARPHQSEDWYPTLHPPPTGHLPCPPPPTMLPLSLEPP 222

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 556 PDAGNRGKPGHPQSPGHRAA-ARWQPSRHPPPAGRTAATSREPR*PMTCRRPAKTQMGP 383
           P + + G  G   SPG  AA  RW P+R   P G     +R PR P    +PA     P
Sbjct: 175 PASSSSGSSGSSGSPGPSAAPRRWSPAR-GDPVGEPGPAAR-PRTPAPPAQPAAVAAAP 231

>PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Salivary|
           proline-rich protein) (Con1 glycoprotein) [Contains:
           Basic peptide P-F] (Fragment)
          Length = 382

 Score = 26.2 bits (56), Expect(2) = 4.9
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 556 PDAGNRGK----PGHPQSPGHRAAARWQPSRHPP--PAGRTAATSREPR*P 422
           P  GN+ +    PG PQ P  +  ++ + +R PP  P G        P+ P
Sbjct: 296 PQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGP 346



 Score = 22.3 bits (46), Expect(2) = 4.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 354 PVANDDAAAQSLPPPAQDRRHLRAPPGASPSR 259
           P A  +      PP  Q +   R P G  PSR
Sbjct: 348 PPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 379

>GPR88_HUMAN (Q9GZN0) Probable G-protein coupled receptor 88 (Striatum-specific|
           G-protein coupled receptor)
          Length = 384

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 17/36 (47%), Positives = 17/36 (47%)
 Frame = -3

Query: 375 GPGGCRHPVANDDAAAQSLPPPAQDRRHLRAPPGAS 268
           GPGG  HP     A AQ LPP    RR  R   G S
Sbjct: 255 GPGGAAHP-----AQAQPLPPALHPRRAQRRLSGLS 285

>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 360 RHPVANDDAAAQSLPPPAQDRRHLRAPPGASPSRVR 253
           R P+ ++    ++L  P   RR  R+PP  +PSR R
Sbjct: 477 RDPLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSRRR 512

>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)|
           (EBNA-6) (EBNA-3C) (EBNA-4B)
          Length = 992

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = -1

Query: 497 CTLATEPPSTTSRTHRRHL----PRATLTHDLPPARQDPDGPLDLGL 369
           C L+             HL    P   ++H+  P  +DPD PLDL L
Sbjct: 687 CALSVMDAGKAQPIESSHLSSMSPTQPISHEEQPRYEDPDAPLDLSL 733

>MSH4_MOUSE (Q99MT2) MutS protein homolog 4 (mMsh4)|
          Length = 958

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 502 AAARWQPSRHPPPAGRTAATSREP 431
           ++ RW PSR   P GRT A++  P
Sbjct: 58  SSPRWTPSRRDAPCGRTLASASRP 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,364,661
Number of Sequences: 219361
Number of extensions: 947520
Number of successful extensions: 5774
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5702
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)