ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart31f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.031
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
3dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
4dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
5dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
6gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 46 0.12
7dbj|AB035313.1| Chlamydomonas sp. W80 sbp-1 mRNA for sedoheptulo... 46 0.12
8emb|CR725975.2|CNS0GN3X Tetraodon nigroviridis full-length cDNA 44 0.49
9emb|CR636649.2|CNS0EQ7J Tetraodon nigroviridis full-length cDNA 44 0.49
10dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 44 0.49
11gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, comp... 42 1.9
12gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 1.9
13gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.9
14gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.9
15gb|DQ018754.1| Gallus gallus clone AY002 18S ribosomal RNA gene,... 42 1.9
16gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.9
17gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.9
18ref|XM_478644.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
19ref|XM_588922.2| PREDICTED: Bos taurus similar to Fc alpha/mu re... 40 7.6
20gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.6
21gb|AC146699.5| Mus musculus chromosome 6, clone RP24-211G11, com... 40 7.6
22emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chr... 40 7.6
23emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chrom... 40 7.6
24emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 40 7.6
25emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for bi... 40 7.6
26emb|AJ720737.1| Gallus gallus mRNA for hypothetical protein, clo... 40 7.6
27ref|NM_001006363.1| Gallus gallus RAB5A, member RAS oncogene fam... 40 7.6
28dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.6
29gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.6
30gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete... 40 7.6
31dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.6
32gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.6
33gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can... 40 7.6
34dbj|AK170157.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.6
35gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 40 7.6
36gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosom... 40 7.6
37gb|AC155656.10| Mus musculus 6 BAC RP24-67I3 (Roswell Park Cance... 40 7.6
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
42gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 7.6
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.6
44ref|NM_001009375.1| Felis catus adrenergic, beta-1-, receptor (A... 40 7.6
45dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
46dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
47dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.6
48dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, c... 40 7.6
49dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
50dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
51dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
52dbj|AK109605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
53dbj|AK100079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
54gb|AF192344.1|AF192344 Felis catus beta-1 adrenergic receptor ge... 40 7.6
55dbj|AK060208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
56gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 40 7.6
57dbj|AB006206.3| Streptomyces griseus AmfR, AmfA, AmfB, AmfS and ... 40 7.6
58gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.6
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6 
>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 169 gccggcgtcgccggctcccgccgcgggc 196
           |||| |||||||||||||||||||||||
Sbjct: 715 gccgtcgtcgccggctcccgccgcgggc 742
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 169     gccggcgtcgccggctcccgccgcgggc 196
               |||| |||||||||||||||||||||||
Sbjct: 5630388 gccgtcgtcgccggctcccgccgcgggc 5630361
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 169   gccggcgtcgccggctcccgccgcgggc 196
             |||| |||||||||||||||||||||||
Sbjct: 58124 gccgtcgtcgccggctcccgccgcgggc 58097
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>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full
           insert sequence
          Length = 6528

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 169 gccggcgtcgccggctcccgccgcgggc 196
           |||| |||||||||||||||||||||||
Sbjct: 712 gccgtcgtcgccggctcccgccgcgggc 739
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>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
           insert sequence
          Length = 2981

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 169 gccggcgtcgccggctcccgccgcgggc 196
           |||| |||||||||||||||||||||||
Sbjct: 715 gccgtcgtcgccggctcccgccgcgggc 742
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Minus

                                              
Query: 293     tggcggcggtcctgcgcgggcgggggcaggc 323
               ||||||||||| |||||||||||||||||||
Sbjct: 3013819 tggcggcggtc-tgcgcgggcgggggcaggc 3013790
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>dbj|AB035313.1| Chlamydomonas sp. W80 sbp-1 mRNA for
           sedoheptulose-1,7-bisphosphatase, complete cds
          Length = 1361

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 102 ccccgcgggcgtccggccgcgcc 124
           |||||||||||||||||||||||
Sbjct: 28  ccccgcgggcgtccggccgcgcc 50
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>emb|CR725975.2|CNS0GN3X Tetraodon nigroviridis full-length cDNA
          Length = 1244

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 457 gtccggctggtggtggatggcg 478
           ||||||||||||||||||||||
Sbjct: 842 gtccggctggtggtggatggcg 863
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>emb|CR636649.2|CNS0EQ7J Tetraodon nigroviridis full-length cDNA
          Length = 1354

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 201  cccaggtgacgctggcagcagc 222
            ||||||||||||||||||||||
Sbjct: 1126 cccaggtgacgctggcagcagc 1105
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>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 72     cctccccgaccgcgaccgcggccgcg 97
              ||||| ||||||||||||||||||||
Sbjct: 712852 cctccacgaccgcgaccgcggccgcg 712877
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>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence
          Length = 237590

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 418    tcatgggtcagcgtggctctc 438
              |||||||||||||||||||||
Sbjct: 206544 tcatgggtcagcgtggctctc 206564
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 507     tggccggggctttgcgggtgg 527
               |||||||||||||||||||||
Sbjct: 3620906 tggccggggctttgcgggtgg 3620926
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 213     tggcagcagcggcccctggcc 233
               |||||||||||||||||||||
Sbjct: 3980683 tggcagcagcggcccctggcc 3980663
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 291     ggtggcggcggtcctgcgcgggcgggggcaggctctgggcg 331
               ||||||||||||||||| ||| | ||||| | |||||||||
Sbjct: 1156108 ggtggcggcggtcctgctcggcccggggctgactctgggcg 1156148
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>gb|DQ018754.1| Gallus gallus clone AY002 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, complete sequence; and
           5.8S ribosomal RNA gene, partial sequence
          Length = 2393

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 437 tcgggaggtggcggcggtgcg 457
           |||||||||||||||||||||
Sbjct: 614 tcgggaggtggcggcggtgcg 634
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 75      ccccgaccgcgaccgcggccgcgttgccc 103
               ||||| ||||||||||||||||| |||||
Sbjct: 2133681 ccccggccgcgaccgcggccgcgctgccc 2133709
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 491    gcgtgcagcagcgcggtggcc 511
              |||||||||||||||||||||
Sbjct: 427731 gcgtgcagcagcgcggtggcc 427751
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>ref|XM_478644.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1988

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  cgaccgcgaccgcggccgcg 97
           ||||||||||||||||||||
Sbjct: 204 cgaccgcgaccgcggccgcg 223
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>ref|XM_588922.2| PREDICTED: Bos taurus similar to Fc alpha/mu receptor (LOC511565),
           mRNA
          Length = 1622

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  accgcggccgcgttgcccccgcgg 109
           |||||||||||||||||| |||||
Sbjct: 398 accgcggccgcgttgccctcgcgg 421
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gcacccgccaggcccagatc 380
              ||||||||||||||||||||
Sbjct: 405451 gcacccgccaggcccagatc 405432
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>gb|AC146699.5| Mus musculus chromosome 6, clone RP24-211G11, complete sequence
          Length = 86901

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   ttgcgggtggcctggtttgc 537
             ||||||||||||||||||||
Sbjct: 66983 ttgcgggtggcctggtttgc 67002
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>emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chromosome 13 Contains part
             of the GPC6 gene for glypican 6 and a novel gene, complete
             sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   ccttcccctccaggggctcc 252
             ||||||||||||||||||||
Sbjct: 38536 ccttcccctccaggggctcc 38517
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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    tcacaactgtgaaactctatagtt 33
             |||||| |||||||||||||||||
Sbjct: 43419 tcacaaatgtgaaactctatagtt 43442
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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    cgaccgcgaccgcggccgcg 97
             ||||||||||||||||||||
Sbjct: 71803 cgaccgcgaccgcggccgcg 71822
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>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    cgaccgcgaccgcggccgcg 97
             ||||||||||||||||||||
Sbjct: 78426 cgaccgcgaccgcggccgcg 78445
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>emb|AJ720737.1| Gallus gallus mRNA for hypothetical protein, clone 24h4
          Length = 2373

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 tcgggaggtggcggcggtgc 456
           ||||||||||||||||||||
Sbjct: 225 tcgggaggtggcggcggtgc 206
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>ref|NM_001006363.1| Gallus gallus RAB5A, member RAS oncogene family (RAB5A), mRNA
          Length = 2373

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 tcgggaggtggcggcggtgc 456
           ||||||||||||||||||||
Sbjct: 225 tcgggaggtggcggcggtgc 206
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     tgacgctggcagcagcggcc 226
               ||||||||||||||||||||
Sbjct: 1911801 tgacgctggcagcagcggcc 1911782
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     ggcgtcgccggctcccgccg 191
               ||||||||||||||||||||
Sbjct: 2214054 ggcgtcgccggctcccgccg 2214073
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>gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete sequence
          Length = 80650

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   gcagcagcgcggtggccggg 514
             ||||||||||||||||||||
Sbjct: 13842 gcagcagcgcggtggccggg 13861
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 461     ggctggtggtggatggcggc 480
               ||||||||||||||||||||
Sbjct: 4264228 ggctggtggtggatggcggc 4264209
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     ccggcgtcgccggctcccgc 189
               ||||||||||||||||||||
Sbjct: 1368356 ccggcgtcgccggctcccgc 1368375
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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 155413

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 10   tcacaactgtgaaactctatagtt 33
            |||||| |||||||||||||||||
Sbjct: 7010 tcacaaatgtgaaactctatagtt 7033
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>dbj|AK170157.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630023I21
            product:thyroid hormone receptor associated protein 2,
            full insert sequence
          Length = 2645

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  agcagcggcccctggccctt 236
            ||||||||||||||||||||
Sbjct: 1219 agcagcggcccctggccctt 1238
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
             sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cctctctctcctccccgacc 82
             ||||||||||||||||||||
Sbjct: 82024 cctctctctcctccccgacc 82043
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>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence
          Length = 159755

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tgattcttcacaactgtgaa 22
              ||||||||||||||||||||
Sbjct: 112797 tgattcttcacaactgtgaa 112816
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>gb|AC155656.10| Mus musculus 6 BAC RP24-67I3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162118

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 518    ttgcgggtggcctggtttgc 537
              ||||||||||||||||||||
Sbjct: 142453 ttgcgggtggcctggtttgc 142434
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 63       cctctctctcctccccgacc 82
                ||||||||||||||||||||
Sbjct: 20680572 cctctctctcctccccgacc 20680591
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 63       cctctctctcctccccgacc 82
                ||||||||||||||||||||
Sbjct: 16495110 cctctctctcctccccgacc 16495091
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 328      ggcggcggcatcgtcattgg 347
                ||||||||||||||||||||
Sbjct: 28053014 ggcggcggcatcgtcattgg 28053033
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 78       cgaccgcgaccgcggccgcg 97
                ||||||||||||||||||||
Sbjct: 21707229 cgaccgcgaccgcggccgcg 21707248
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ggcctggcccaggtgacgct 213
               ||||||||||||||||||||
Sbjct: 3099096 ggcctggcccaggtgacgct 3099077
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     ccctggcccttcccctccag 245
               ||||||||||||||||||||
Sbjct: 3836260 ccctggcccttcccctccag 3836241
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>ref|NM_001009375.1| Felis catus adrenergic, beta-1-, receptor (ADRB1), mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   gcggccgcgttgcccccgcgggcg 112
            |||||||||| |||||||||||||
Sbjct: 1202 gcggccgcgtggcccccgcgggcg 1179
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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    cgaccgcgaccgcggccgcg 97
             ||||||||||||||||||||
Sbjct: 24412 cgaccgcgaccgcggccgcg 24431
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0562A06
          Length = 154198

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ggcggcggcatcgtcattgg 347
              ||||||||||||||||||||
Sbjct: 130506 ggcggcggcatcgtcattgg 130525
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 317     ggcaggctctgggcggcggcatcg 340
               |||||||| |||||||||||||||
Sbjct: 1142505 ggcaggctatgggcggcggcatcg 1142482
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>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence
          Length = 184026

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   gtggcggcggtgcgtccggc 463
             ||||||||||||||||||||
Sbjct: 82127 gtggcggcggtgcgtccggc 82146
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>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1123_B08
          Length = 134028

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    cctctctctcctccccgacc 82
             ||||||||||||||||||||
Sbjct: 27335 cctctctctcctccccgacc 27316
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>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0046G12
          Length = 189391

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     cctctctctcctccccgacc 82
              ||||||||||||||||||||
Sbjct: 183657 cctctctctcctccccgacc 183638
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0604E01
          Length = 159049

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ggcggcggcatcgtcattgg 347
             ||||||||||||||||||||
Sbjct: 50509 ggcggcggcatcgtcattgg 50528
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>dbj|AK109605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F02, full
           insert sequence
          Length = 1985

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  cgaccgcgaccgcggccgcg 97
           ||||||||||||||||||||
Sbjct: 204 cgaccgcgaccgcggccgcg 223
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>dbj|AK100079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J23,
          full insert sequence
          Length = 2495

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 63 cctctctctcctccccgacc 82
          ||||||||||||||||||||
Sbjct: 21 cctctctctcctccccgacc 40
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>gb|AF192344.1|AF192344 Felis catus beta-1 adrenergic receptor gene, complete cds
          Length = 1425

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   gcggccgcgttgcccccgcgggcg 112
            |||||||||| |||||||||||||
Sbjct: 1202 gcggccgcgtggcccccgcgggcg 1179
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>dbj|AK060208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B01, full
           insert sequence
          Length = 1538

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 328 ggcggcggcatcgtcattgg 347
           ||||||||||||||||||||
Sbjct: 627 ggcggcggcatcgtcattgg 608
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     tcacaactgtgaaactctatagtt 33
              |||||| |||||||||||||||||
Sbjct: 138221 tcacaaatgtgaaactctatagtt 138198
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>dbj|AB006206.3| Streptomyces griseus AmfR, AmfA, AmfB, AmfS and AmfT genes and 4
           ORFs, complete cds
          Length = 10657

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 440 ggaggtggcggcggtgcgtc 459
           ||||||||||||||||||||
Sbjct: 886 ggaggtggcggcggtgcgtc 905
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     tgacgctggcagcagcggcc 226
               ||||||||||||||||||||
Sbjct: 1933826 tgacgctggcagcagcggcc 1933807
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 63       cctctctctcctccccgacc 82
                ||||||||||||||||||||
Sbjct: 20691844 cctctctctcctccccgacc 20691863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,064,871
Number of Sequences: 3902068
Number of extensions: 4064871
Number of successful extensions: 98678
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95633
Number of HSP's gapped (non-prelim): 3043
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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