ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31e08 |
|---|---|
| Clone Library Name | barley_pub |
>PSB4_ARATH (Q7DLR9) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome subunit beta type 7) (20S proteasome beta subunit G-1) (Proteasome component H) Length = 246 Score = 206 bits (524), Expect = 4e-53 Identities = 98/136 (72%), Positives = 113/136 (83%) Frame = +3 Query: 144 TQRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEF 323 +QRTL PYVTG S++A+KYKDGV+MA D G SYGSTLRYK++ER+K +GKHSL+G SGE Sbjct: 21 SQRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEI 80 Query: 324 SDFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXXX 503 SDFQEILRYLDELTLND+MWDDGNSLGPKEIH YLTRVMYNRRNKF+PLWN+ Sbjct: 81 SDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNT----LVLG 136 Query: 504 XXXXDEKYLGMVNMIG 551 + YLGMV+MIG Sbjct: 137 GVKNGKSYLGMVSMIG 152
>PSB4_XENLA (P28024) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (Fragment) Length = 242 Score = 120 bits (302), Expect = 2e-27 Identities = 54/135 (40%), Positives = 92/135 (68%) Frame = +3 Query: 147 QRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFS 326 + TLNP VTG SV+ +K+ GVI+A D SYGS R++++ RI +V +++++G SG+++ Sbjct: 22 RHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYA 81 Query: 327 DFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXXXX 506 D+Q + + +D++ +++ + DG++ PK IH++LTRVMYNRR+K +PLWN+ Sbjct: 82 DYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNT----VVIGG 137 Query: 507 XXXDEKYLGMVNMIG 551 E +LG V+ +G Sbjct: 138 FYNGESFLGYVDKLG 152
>PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC 3.4.25.1)| Length = 262 Score = 120 bits (301), Expect = 3e-27 Identities = 54/110 (49%), Positives = 80/110 (72%) Frame = +3 Query: 147 QRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFS 326 QRT+ P VTG+SV+A+K+ DGV++A D ASYGS R+ VER+ +VG ++++G G+ S Sbjct: 34 QRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDIS 93 Query: 327 DFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWN 476 D+Q+I R L++L + + + DG +L P IH YL++V+Y RRNK DP WN Sbjct: 94 DYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWN 143
>PSB4_HUMAN (P28070) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (HSN3) (HsBPROS26) Length = 264 Score = 117 bits (294), Expect = 2e-26 Identities = 53/134 (39%), Positives = 88/134 (65%) Frame = +3 Query: 150 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 RT NP VTG SV+ +K++ GV++A D SYGS R++++ RI V +++G SG+++D Sbjct: 45 RTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYAD 104 Query: 330 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXXXXX 509 FQ + + L ++ +++ + DG+S P+ IH++LTR MY+RR+K +PLWN+ Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNT----MVIGGY 160 Query: 510 XXDEKYLGMVNMIG 551 E +LG V+M+G Sbjct: 161 ADGESFLGYVDMLG 174
>PSB4_RAT (P34067) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (RN3) Length = 263 Score = 117 bits (292), Expect = 3e-26 Identities = 53/134 (39%), Positives = 88/134 (65%) Frame = +3 Query: 150 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 RT NP VTG SV+ +K+ GV++A D SYGS R++++ RI V +++G SG+++D Sbjct: 44 RTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYAD 103 Query: 330 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXXXXX 509 FQ + + L ++ +++ ++ DG+S P+ IH++LTR MY+RR+K +PLWN+ Sbjct: 104 FQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNT----KVIGGY 159 Query: 510 XXDEKYLGMVNMIG 551 E +LG V+M+G Sbjct: 160 AGGESFLGYVDMLG 173
>PSB4_MOUSE (P99026) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) Length = 264 Score = 116 bits (291), Expect = 4e-26 Identities = 53/134 (39%), Positives = 87/134 (64%) Frame = +3 Query: 150 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 RT NP VTG SV+ +K+ GV++A D SYGS R++++ RI V +++G SG+++D Sbjct: 45 RTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYAD 104 Query: 330 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXXXXX 509 FQ + + L ++ +++ + DG+S P+ IH++LTR MY+RR+K +PLWN+ Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNT----MVIGGY 160 Query: 510 XXDEKYLGMVNMIG 551 E +LG V+M+G Sbjct: 161 ADGESFLGYVDMLG 174
>PSB4_PIG (Q29384) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (Fragment) Length = 154 Score = 112 bits (280), Expect = 7e-25 Identities = 48/110 (43%), Positives = 77/110 (70%) Frame = +3 Query: 150 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 RT NP VTG SV+ +K++ GV++A D SYGS R++++ RI V +++G SG+++D Sbjct: 45 RTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYAD 104 Query: 330 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNS 479 FQ + + L ++ +++ + DG+S PK IH++LTR MYNRR K +PLW + Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154
>PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC 3.4.25.1)| Length = 268 Score = 103 bits (257), Expect = 3e-22 Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 9/116 (7%) Frame = +3 Query: 153 TLNPY---------VTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLI 305 T+ PY TG SV+ ++Y GV++A DT SYGS RY+++ER+ +V K+ L+ Sbjct: 41 TMGPYGTKHSTASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL 100 Query: 306 GGSGEFSDFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLW 473 GGSG+F+D Q I R +D+ + D DD + PK + +++TRV+YNRR++ +PL+ Sbjct: 101 GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLY 156
>PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Macropain subunit| PRE4) (Proteinase YSCE subunit PRE4) (Multicatalytic endopeptidase complex subunit PRE4) Length = 266 Score = 100 bits (249), Expect = 3e-21 Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Frame = +3 Query: 153 TLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDF 332 T P VTG SVI+MKY +GVI+A D SYGS LR+ VER+ VG ++++G SG+ SD Sbjct: 34 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDM 93 Query: 333 QEILRYLDEL----TLNDHMWDDGNSLGPKEIHAYLTRVMYNRRNKFDPLWNSXXXXXXX 500 Q I R L +L ++ + D +L P I YL VMY RR+K +PLWN+ Sbjct: 94 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNA---IIVA 150 Query: 501 XXXXXDEKYLGMVNMIG 551 +++L VN++G Sbjct: 151 GVQSNGDQFLRYVNLLG 167
>PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 206 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/66 (31%), Positives = 39/66 (59%) Frame = +3 Query: 156 LNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQ 335 L + G + + + K+GV++A DT AS G+ + K+V +I ++ +H I G+G+ D Sbjct: 4 LKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDIL 63 Query: 336 EILRYL 353 ++R L Sbjct: 64 NLVRLL 69
>PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/60 (31%), Positives = 36/60 (60%) Frame = +3 Query: 174 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 353 G + + + KDGV++A D AS G+ + ++V +I ++ +H I G+G+ D ++R L Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
>PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 43.5 bits (101), Expect = 4e-04 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = +3 Query: 174 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 353 G + + + DGV++A D AS G+ + K+V +I ++ +H I G+G+ D ++R L Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
>PSB7A_ARATH (O23710) Proteasome subunit beta type 7-A precursor (EC 3.4.25.1)| (Proteasome subunit beta type 2) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) Length = 273 Score = 37.7 bits (86), Expect = 0.022 Identities = 17/57 (29%), Positives = 33/57 (57%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 341 TG +++ + +KDGVI+ DT A+ G + K+ E+I + + G+G +D + + Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
>PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor (EC 3.4.25.1)| (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome component FC) Length = 274 Score = 37.7 bits (86), Expect = 0.022 Identities = 17/57 (29%), Positives = 33/57 (57%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 341 TG +++ + +KDGVI+ DT A+ G + K+ E+I + + G+G +D + + Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC| 3.4.25.1) Length = 226 Score = 35.8 bits (81), Expect = 0.084 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +3 Query: 174 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQ---EIL 344 G ++ A++YKDGVI+A D+ + G+ + + +++ ++ + SG +D Q ++L Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83 Query: 345 RY 350 +Y Sbjct: 84 KY 85
>PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4.25.1)| (Macropain subunit PUP1) (Proteinase YSCE subunit PUP1) (Multicatalytic endopeptidase complex subunit PUP1) Length = 261 Score = 35.4 bits (80), Expect = 0.11 Identities = 13/61 (21%), Positives = 34/61 (55%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRY 350 TG +++ +K+ +GV++A DT ++ G + K+ ++ + G+G +D + + + Sbjct: 28 TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87 Query: 351 L 353 + Sbjct: 88 I 88
>PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 35.0 bits (79), Expect = 0.14 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 TG ++ + YKDG+++ DT A+ G + K+ +I + + G+G +D Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94
>PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 35.0 bits (79), Expect = 0.14 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 TG ++ + YKDG+++ DT A+ G + K+ +I + + G+G +D Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94
>PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 35.0 bits (79), Expect = 0.14 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 329 TG ++ + YKDG+++ DT A+ G + K+ +I + + G+G +D Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94
>PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)| (Proteasome MECl-1) (Macropain subunit MECl-1) (Multicatalytic endopeptidase complex subunit MECl-1) Length = 273 Score = 35.0 bits (79), Expect = 0.14 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILR 347 TG ++ + ++DGVI+ DT A+ S + KS E+I + G+G +D + R Sbjct: 38 TGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTR 96
>PSB10_HUMAN (P40306) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)| (Proteasome MECl-1) (Macropain subunit MECl-1) (Multicatalytic endopeptidase complex subunit MECl-1) Length = 273 Score = 34.7 bits (78), Expect = 0.19 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +3 Query: 171 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILR 347 TG ++ + ++DGVI+ DT A+ S + KS E+I + G+G +D + R Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTR 96
>PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 213 Score = 33.9 bits (76), Expect = 0.32 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +3 Query: 174 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 353 G + + + KDGV+MA + A+ G+ + K+ ++I ++ + +G D Q + R + Sbjct: 11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARII 70
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 32.7 bits (73), Expect = 0.71 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 23 PQPQPQPSRGLPPTSETKPHQPPTRTD 103 PQPQPQP PP ++ + +PP RT+ Sbjct: 644 PQPQPQPVAPAPPPAKKRRGRPPGRTN 670
>PALA_EMENI (P79020) pH-response regulator protein palA/RIM20| Length = 847 Score = 32.7 bits (73), Expect = 0.71 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 23 PQPQPQPSRGLPPTSETKPHQPPTRT 100 PQPQP PS+ +PP S+ +P P RT Sbjct: 773 PQPQP-PSQAIPPQSQPQPQPQPLRT 797
>PSB2_NEUCR (Q9P6U7) Probable proteasome subunit beta type 2 (EC 3.4.25.1)| Length = 203 Score = 32.3 bits (72), Expect = 0.92 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +3 Query: 201 KDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRY 350 KD I+A A G+T+ S ++ + + KH+L+ SGE D + Y Sbjct: 10 KDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEY 59
>CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96| Length = 584 Score = 32.3 bits (72), Expect = 0.92 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +2 Query: 8 ERDHHPQPQPQPSRGLPPTSETKP 79 E++ P+P+P+P++G P SET+P Sbjct: 39 EQEPEPKPEPEPTQGREPESETQP 62
>PSB6_YEAST (P38624) Proteasome component PRE3 precursor (EC 3.4.25.1)| (Macropain subunit PRE3) (Proteinase YSCE subunit PRE3) (Multicatalytic endopeptidase complex subunit PRE3) Length = 215 Score = 32.3 bits (72), Expect = 0.92 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 174 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 341 G S++A+ +KDGVI+ D+ + G+ + + +++ V SG +D Q I Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 74
>FDXG_HAEIN (P46448) Formate dehydrogenase major subunit (EC 1.2.1.2) (Formate| dehydrogenase alpha subunit) (FDH alpha subunit) Length = 1028 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = -3 Query: 459 TYCACCTLLLSGRHGFPWGPMSSHHPTYDRSKLIH----PDSAKSPG 331 TYCA +L G P+ +SSH T RSKL H PD S G Sbjct: 51 TYCAVSCGMLLYSTGKPYNSLSSHTGTNTRSKLFHIEGDPDHPVSRG 97
>PSB2_CRYNE (Q00826) Probable proteasome subunit beta type 2 (EC 3.4.25.1)| Length = 224 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +3 Query: 201 KDGVIMACDTGASYGSTLRYKSVE-RIKEVGKHSLIGGSGEFSDFQEILRYLD 356 KD VI+A D GA S +R KS E ++K +G H + SGE D Y++ Sbjct: 10 KDYVILASDMGAG-RSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIE 61
>NO12A_PEA (P20799) Early nodulin 12A precursor (N-12A)| Length = 110 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 2 QRERDHHPQPQPQPSRGLPPTSETKPHQPP 91 Q+E H PQ +P R PP E H+PP Sbjct: 56 QKETPVHKPPQKEPPRHKPPQKEPPRHKPP 85
>HSLV_BRUSU (Q8FY11) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 184 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = +3 Query: 159 NPYVTGNSVIAMKYKDG-VIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG-SGEFSDF 332 NP + I KDG V++A D S G+T+ + +++ +GK ++I G +G +D Sbjct: 5 NPTTIYGTTIVTVRKDGKVVIAGDGQVSLGNTVMKGNARKVRRIGKGNVIAGFAGATADA 64 Query: 333 QEILRYLD 356 +L L+ Sbjct: 65 FTLLERLE 72
>HSLV_BRUME (Q8YE31) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 184 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = +3 Query: 159 NPYVTGNSVIAMKYKDG-VIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG-SGEFSDF 332 NP + I KDG V++A D S G+T+ + +++ +GK ++I G +G +D Sbjct: 5 NPTTIYGTTIVTVRKDGKVVIAGDGQVSLGNTVMKGNARKVRRIGKGNVIAGFAGATADA 64 Query: 333 QEILRYLD 356 +L L+ Sbjct: 65 FTLLERLE 72
>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 828 Score = 31.2 bits (69), Expect = 2.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 2 QRERDHHPQPQPQPSRGLPPTSETKPHQP 88 Q + PQPQ QP LPP +T+P P Sbjct: 407 QPQPQPQPQPQSQPQPQLPPQPQTQPQTP 435
>PSB2_YEAST (P22141) Proteasome component C11 (EC 3.4.25.1) (Macropain subunit| C11) (Proteinase YSCE subunit 11) (Multicatalytic endopeptidase complex subunit C11) Length = 198 Score = 30.4 bits (67), Expect = 3.5 Identities = 12/57 (21%), Positives = 31/57 (54%) Frame = +3 Query: 183 VIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 353 ++ ++ +D VI+A + G ++ S ++ +++ H+L+ +GE D + Y+ Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYI 60
>METX_COREF (Q8FRT0) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 377 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 483 PGSSIEGQTYCACCTLLLSGRHGFPWGPMSSH 388 PG +I+ YC CT +L G +G GP S H Sbjct: 72 PGKAIDTDLYCVICTNVLGGCNG-STGPSSQH 102
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 30.4 bits (67), Expect = 3.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 23 PQPQPQPSRGLPPTSETKPHQPPTRTD 103 P+P+PQP PP ++ + +PP RT+ Sbjct: 634 PEPEPQPVTPAPPPAKKRRGRPPGRTN 660
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.4 bits (67), Expect = 3.5 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 8 ERDHHPQPQPQPSRGLPPTSETKPHQPP 91 ++ P PQ P + PP + PHQPP Sbjct: 65 QQQQQPPPQQPPPQQPPPHQQPPPHQPP 92
>PSB2_ORYSA (Q9LST6) Proteasome subunit beta type 2 (EC 3.4.25.1) (20S| proteasome alpha subunit D) (20S proteasome subunit beta-4) Length = 212 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/73 (23%), Positives = 35/73 (47%) Frame = +3 Query: 183 VIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDEL 362 VI + +D ++A DT A + +++ + H L+G SGE D + ++ + Sbjct: 4 VIGVVGRDIAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQK- 62 Query: 363 TLNDHMWDDGNSL 401 N H++ N++ Sbjct: 63 --NLHLYQFRNNI 73
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 11 RDHHPQPQPQPSRGLPPTSETKPHQPPTRT 100 RD P P P G P S KP PP+RT Sbjct: 337 RDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 11 RDHHPQPQPQPSRGLPPTSETKPHQPPTRT 100 RD P P P G P S KP PP+RT Sbjct: 337 RDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366
>PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2| Length = 691 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Frame = +2 Query: 2 QRERDHHPQP-----QPQPSRGLPPTSE-TKPHQPP 91 Q+++ P P PQP+ PP S+ T PHQPP Sbjct: 192 QQQQQQQPPPPPTSQHPQPASQAPPQSQPTPPHQPP 227
>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding| protein MBD5) Length = 1494 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -1 Query: 326 TELPTPSNKAMLSNLLDTLHTLVSQG*PIRGSSITCHDHTILVFHCNHRVTSH 168 T LP +N+ ++ ++++ V Q P+RG ++ CH+ H N V +H Sbjct: 728 TALPCSANQLHFTD--PSMNSSVLQNIPLRGEAVHCHNANTNFVHSNSPVPNH 778
>PSB3_YEAST (P25451) Proteasome component PUP3 (EC 3.4.25.1) (Macropain subunit| PUP3) (Multicatalytic endopeptidase complex subunit PUP3) Length = 205 Score = 29.6 bits (65), Expect = 6.0 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Frame = +3 Query: 168 VTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD---FQE 338 + G V+AM KD V +ACD S E+I G H +G +G +D E Sbjct: 7 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNE 65 Query: 339 ILRYLDELTLNDHMWDDGNSLGPKEIHAYLTRVMYNRR 452 + RY L + + ++ P+ ++ +Y RR Sbjct: 66 MFRYKTNL----YKLKEERAIEPETFTQLVSSSLYERR 99
>FA44A_HUMAN (Q8NFC6) Protein FAM44A| Length = 502 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 20 HPQPQPQPSRGLPPTSETKPHQPP 91 +PQPQP P PP + +P PP Sbjct: 4 NPQPQPPPPAPPPPPPQPQPQPPP 27
>2A5D_HUMAN (Q14738) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (PP2A, B subunit, B56 delta isoform) (PP2A, B subunit, PR61 delta isoform) (PP2A, B subunit, R5 delta isoform) Length = 602 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +2 Query: 8 ERDHHPQPQPQP-SRGLPPTSETKPHQ---PPTR 97 E PQPQPQP ++ PP+S +P PPT+ Sbjct: 35 EAQPQPQPQPQPQAQSQPPSSNKRPSNSTPPPTQ 68
>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1| (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) Length = 634 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +2 Query: 23 PQPQPQPSRGLPPTSETKPHQPP 91 P PQPQP PP S+ P PP Sbjct: 363 PPPQPQPPPPPPPASQQPPPPPP 385
>PSB2B_ARATH (O24633) Proteasome subunit beta type 2-B (EC 3.4.25.1) (Proteasome| subunit beta type 4) (20S proteasome beta subunit D-2) (Proteasome component GA) Length = 199 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +3 Query: 213 IMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDE 359 I+A DT A + L ++I + H L+ SGE D + Y+ + Sbjct: 14 IVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQK 62
>PSB2A_ARATH (O23714) Proteasome subunit beta type 2-A (EC 3.4.25.1) (Proteasome| subunit beta type 4) (20S proteasome beta subunit D-1) (Proteasome component GB) Length = 204 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +3 Query: 213 IMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDE 359 I+A DT A + L + ++I + H L+ SGE D + Y+ + Sbjct: 14 IVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQK 62
>HXA10_MORSA (Q9PWD6) Homeobox protein Hox-A10| Length = 289 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +2 Query: 29 PQPQPSR---GLPPTSETKPHQPPTRT 100 PQP PS GL PT+ + H PPT T Sbjct: 111 PQPNPSHSHFGLHPTAPARFHTPPTST 137
>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) Length = 352 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = +2 Query: 2 QRERDHHPQPQPQPSRGLPPTSET------KPHQPPTRTD 103 QR + + Q Q SRG PP E KPHQPP R D Sbjct: 279 QRRQQENMQRQ---SRGEPPLPEEDLSKLFKPHQPPARMD 315
>2A5D_RABIT (Q28653) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (PP2A, B subunit, B56 delta isoform) (PP2A, B subunit, PR61 delta isoform) (PP2A, B subunit, R5 delta isoform) (PP2A, Length = 586 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +2 Query: 8 ERDHHPQPQPQPS-RGLPPTSETKPHQ---PPTR 97 E PQPQPQP + PP+S +P PPT+ Sbjct: 19 EAQPQPQPQPQPQPQSQPPSSNKRPSNSTPPPTQ 52
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 17 HHPQPQPQPSRGLPPTSETKPHQPP 91 H Q QP P + PP + PHQPP Sbjct: 66 HQQQQQPPPQQ--PPPQQPPPHQPP 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,261,710 Number of Sequences: 219361 Number of extensions: 1733071 Number of successful extensions: 7205 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 5404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7018 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
