ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008990.1| Triticum aestivum clone wdk2c.pk010.e4:fis, full insert mRNA sequence Length = 1710 Score = 583 bits (294), Expect = e-163 Identities = 327/338 (96%) Strand = Plus / Plus Query: 205 gcttgcgcgctccgcctcagctcgccggcggtaccagcctcggtcgcggttaccggctct 264 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 122 gcttgcgcgctccgcctcagctcgccggcggtaccagccttggtcgcggttaccggccct 181 Query: 265 gtcttgcctcctccggggtccccaaatccaaagtgttgggtgttagctgcgcgatgaagt 324 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct: 182 gtcttgcctcctccggggtccccaaatccaaagtgctgagtgttagctgcccgatgaagt 241 Query: 325 cctataggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgccctcgca 384 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 242 cctataggctgtccgatctcagcgatgccgaggttagcggcctcaaggcgcgccctcgca 301 Query: 385 ttgatttcacctccattttcagcacggtgaatccgattgttgaagatgtgcgagccagag 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 302 ttgacttcacctccattttcagcacggtgaatccgattgttgaagatgtgcgcgtcagag 361 Query: 445 gtgatgctgcggttaaggattatacagaaaagtttgacaaggtcactctcgataatgctg 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 362 gtgatgctgcggttaaggattatacagaaaagtttgacaaggtcactctcgataatgccg 421 Query: 505 ttgtgcgtgttagggatctcccagatgcagagcttgat 542 ||||||||||||| |||||||||||||||||||||||| Sbjct: 422 ttgtgcgtgttagcgatctcccagatgcagagcttgat 459 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Plus Query: 118 gaccacggtcacggacatcggcgacctccttcacagcgtcgctttgccgccggccgtaga 177 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaccacggtcacggacagcggcgacctccttcacagcgtcgctttgccgccggccgtaga 60 Query: 178 aacccttcaccgccgccgtttggtttcg 205 |||||| ||||||||||||||||||||| Sbjct: 61 aaccctgcaccgccgccgtttggtttcg 88
>ref|NM_188636.1| Oryza sativa (japonica cultivar-group), Ozsa8239 predicted mRNA Length = 1380 Score = 161 bits (81), Expect = 3e-36 Identities = 189/225 (84%) Strand = Plus / Plus Query: 318 atgaagtcctataggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgc 377 |||||||| || |||||||| || |||||||| |||||||| | ||||||||||||||| Sbjct: 115 atgaagtcgtacaggctgtcggagctcagcgacgccgaggtcggcggcctcaaggcgcgc 174 Query: 378 cctcgcattgatttcacctccattttcagcacggtgaatccgattgttgaagatgtgcga 437 || ||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct: 175 ccccgcatcgacttctcctccattttcggcacggtcaatccgattgttgaagacgtgcgc 234 Query: 438 gccagaggtgatgctgcggttaaggattatacagaaaagtttgacaaggtcactctcgat 497 |||| ||||||||||| ||||||||||||| ||||| |||||||| | |||||| Sbjct: 235 atgcgaggcgatgctgcggtcaaggattatacagtgaagttcgacaaggttgcactcgat 294 Query: 498 aatgctgttgtgcgtgttagggatctcccagatgcagagcttgat 542 ||| |||||||||||||| ||||| || |||| ||||||||| Sbjct: 295 gatgtggttgtgcgtgttagcgatcttccggatgtggagcttgat 339
>dbj|AK069972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L20, full insert sequence Length = 1777 Score = 161 bits (81), Expect = 3e-36 Identities = 189/225 (84%) Strand = Plus / Plus Query: 318 atgaagtcctataggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgc 377 |||||||| || |||||||| || |||||||| |||||||| | ||||||||||||||| Sbjct: 211 atgaagtcgtacaggctgtcggagctcagcgacgccgaggtcggcggcctcaaggcgcgc 270 Query: 378 cctcgcattgatttcacctccattttcagcacggtgaatccgattgttgaagatgtgcga 437 || ||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct: 271 ccccgcatcgacttctcctccattttcggcacggtcaatccgattgttgaagacgtgcgc 330 Query: 438 gccagaggtgatgctgcggttaaggattatacagaaaagtttgacaaggtcactctcgat 497 |||| ||||||||||| ||||||||||||| ||||| |||||||| | |||||| Sbjct: 331 atgcgaggcgatgctgcggtcaaggattatacagtgaagttcgacaaggttgcactcgat 390 Query: 498 aatgctgttgtgcgtgttagggatctcccagatgcagagcttgat 542 ||| |||||||||||||| ||||| || |||| ||||||||| Sbjct: 391 gatgtggttgtgcgtgttagcgatcttccggatgtggagcttgat 435
>gb|AY109136.1| Zea mays PCO067414 mRNA sequence Length = 2011 Score = 147 bits (74), Expect = 4e-32 Identities = 191/230 (83%) Strand = Plus / Plus Query: 313 gcgcgatgaagtcctataggctgtccgatctcagcgatgccgaggttagtggcctcaagg 372 ||||||||||||| |||||||| || || |||||||| |||| ||||| |||||||| | Sbjct: 413 gcgcgatgaagtcgtataggctatcggagctcagcgacaccgaagttagcggcctcaaag 472 Query: 373 cgcgccctcgcattgatttcacctccattttcagcacggtgaatccgattgttgaagatg 432 | || || ||||| |||||| | || ||||| ||||||||||||| || |||||||||| Sbjct: 473 ctcgtccccgcatcgatttctcatctatttttggcacggtgaatccaatcgttgaagatg 532 Query: 433 tgcgagccagaggtgatgctgcggttaaggattatacagaaaagtttgacaaggtcactc 492 | || | ||||||||||| || |||||| | || |||||||||||||||||||||| | Sbjct: 533 tccgtgtgagaggtgatgcagcagttaagcactacacagaaaagtttgacaaggtcatgc 592 Query: 493 tcgataatgctgttgtgcgtgttagggatctcccagatgcagagcttgat 542 | ||| ||| ||| || ||||||| ||||| |||||||||||||||||| Sbjct: 593 ttgatgatgttgtcgtctgtgttagcgatcttccagatgcagagcttgat 642
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 89.7 bits (45), Expect = 9e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 318 atgaagtcctataggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgc 377 |||||||| || |||||||| || |||||||| |||||||| | ||||||||||||||| Sbjct: 7347794 atgaagtcgtacaggctgtcggagctcagcgacgccgaggtcggcggcctcaaggcgcgc 7347853 Query: 378 cctcgcattgatttcacctccattttcagcacggtga 414 || ||||| || ||| ||||||||||| ||||||||| Sbjct: 7347854 ccccgcatcgacttctcctccattttcggcacggtga 7347890 Score = 40.1 bits (20), Expect = 7.3 Identities = 50/60 (83%) Strand = Plus / Plus Query: 464 ttatacagaaaagtttgacaaggtcactctcgataatgctgttgtgcgtgttagggatct 523 |||||||| ||||| |||||||| | |||||| ||| |||||||||||||| ||||| Sbjct: 7348175 ttatacagtgaagttcgacaaggttgcactcgatgatgtggttgtgcgtgttagcgatct 7348234
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 89.7 bits (45), Expect = 9e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 318 atgaagtcctataggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgc 377 |||||||| || |||||||| || |||||||| |||||||| | ||||||||||||||| Sbjct: 8822 atgaagtcgtacaggctgtcggagctcagcgacgccgaggtcggcggcctcaaggcgcgc 8881 Query: 378 cctcgcattgatttcacctccattttcagcacggtga 414 || ||||| || ||| ||||||||||| ||||||||| Sbjct: 8882 ccccgcatcgacttctcctccattttcggcacggtga 8918 Score = 40.1 bits (20), Expect = 7.3 Identities = 50/60 (83%) Strand = Plus / Plus Query: 464 ttatacagaaaagtttgacaaggtcactctcgataatgctgttgtgcgtgttagggatct 523 |||||||| ||||| |||||||| | |||||| ||| |||||||||||||| ||||| Sbjct: 9203 ttatacagtgaagttcgacaaggttgcactcgatgatgtggttgtgcgtgttagcgatct 9262
>gb|AY020273.1| Oryza sativa microsatellite MRG2598 containing (GA)X13, closest to marker C955, genomic sequence Length = 226 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 330 aggctgtccgatctcagcgatgccgaggttagtggcctcaaggcgcgccctcgcattgat 389 |||||||| || |||||||| |||||||| | ||||||||||||||||| ||||| || Sbjct: 1 aggctgtcggagctcagcgacgccgaggtcggcggcctcaaggcgcgcccccgcatcgac 60 Query: 390 ttcacctccattttcagcacggtga 414 ||| ||||||||||| ||||||||| Sbjct: 61 ttctcctccattttcggcacggtga 85
>gb|AF023141.1|AF023141 Thlaspi goesingense histidinol dehydrogenase (THD1) mRNA, partial cds Length = 1580 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 366 ctcaaggcgcgccctcgcattgatttcacctccattttcagcac 409 |||||||| |||||||||||||| ||| | |||||||||||||| Sbjct: 137 ctcaaggcacgccctcgcattgacttcgcttccattttcagcac 180
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 aatccgattgttgaagatgtg 434 ||||||||||||||||||||| Sbjct: 148237 aatccgattgttgaagatgtg 148217
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 aatccgattgttgaagatgtg 434 ||||||||||||||||||||| Sbjct: 8086113 aatccgattgttgaagatgtg 8086093
>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24, complete sequence Length = 124420 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 aatccgattgttgaagatgtg 434 ||||||||||||||||||||| Sbjct: 19645 aatccgattgttgaagatgtg 19625
>emb|AM260499.1| Platanus acerifolia partial mRNA for histidinol dehydrogenase (hd gene) Length = 1046 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 441 agaggtgatgctgcggttaaggattatac 469 |||||||||||||| ||||| |||||||| Sbjct: 8 agaggtgatgctgcagttaaagattatac 36
>gb|M60466.1|BNAHDHQ Spring cabbage histidinol dehydrogenase mRNA, complete cds Length = 1606 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 369 aaggcgcgccctcgcattgatttcacctccattttca 405 ||||| |||||||||||||| ||| | |||||||||| Sbjct: 200 aaggcacgccctcgcattgacttctcttccattttca 236
>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete sequence Length = 152776 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gatttcacctccattttcag 406 |||||||||||||||||||| Sbjct: 46759 gatttcacctccattttcag 46778
>gb|AF022214.1| Mycobacteriophage D29, complete genome Length = 49136 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gacatcggcgacctccttca 150 |||||||||||||||||||| Sbjct: 31386 gacatcggcgacctccttca 31405
>gb|AC097230.3| Sus scrofa clone RP44-254G1, complete sequence Length = 162289 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 taaggattatacagaaaagt 477 |||||||||||||||||||| Sbjct: 82102 taaggattatacagaaaagt 82121
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 taaggattatacagaaaagtttga 481 ||||||||||| |||||||||||| Sbjct: 3934803 taaggattatagagaaaagtttga 3934780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,664,462 Number of Sequences: 3902068 Number of extensions: 3664462 Number of successful extensions: 63282 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63188 Number of HSP's gapped (non-prelim): 92 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
