ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart31d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
2ref|NM_185140.1| Oryza sativa (japonica cultivar-group), mRNA 216 6e-53
3gb|AY104557.1| Zea mays PCO107819 mRNA sequence 184 2e-43
4gb|AY105695.1| Zea mays PCO107818 mRNA sequence 172 8e-40
5ref|XM_477225.1| Oryza sativa (japonica cultivar-group), mRNA 121 3e-24
6dbj|AK108213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 4e-17
8gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 98 4e-17
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
10ref|NM_128506.2| Arabidopsis thaliana TIM10; protein translocase... 74 6e-10
11gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map... 74 6e-10
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
13gb|BT004739.1| Arabidopsis thaliana At2g29530 gene, complete cds 74 6e-10
14dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
15dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
16gb|AF150093.1|AF150093 Arabidopsis thaliana small zinc finger-li... 74 6e-10
17gb|AF150096.1|AF150096 Lycopersicon esculentum small zinc finger... 66 1e-07
18gb|AF150099.1|AF150099 Mesembryanthemum crystallinum small zinc ... 62 2e-06
19emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chr... 44 0.50
20gb|AC010036.6| Drosophila melanogaster 3L BAC RP98-7K20 (Roswell... 44 0.50
21gb|AC093957.3| Drosophila melanogaster 3L BAC RP98-14E19 (Roswel... 44 0.50
22gb|AC158675.4| Mus musculus 6 BAC RP23-180J21 (Roswell Park Canc... 44 0.50
23emb|X91372.1|HIVT1U466 Human immunodeficiency virus type 1 vif g... 44 0.50
24emb|X91371.1|HIVT1U460 Human immunodeficiency virus type 1 vif g... 44 0.50
25emb|X91362.1|HIVT1U258 Human immunodeficiency virus type 1 vif g... 44 0.50
26emb|X91361.1|HIVT1U256 Human immunodeficiency virus type 1 vif g... 44 0.50
27gb|AF484488.1| HIV-1 isolate 99UGE22831 from Uganda, partial genome 44 0.50
28gb|AE003534.3| Drosophila melanogaster chromosome 3L, section 51... 44 0.50
29gb|BC084892.1| Xenopus laevis hypothetical LOC495407, mRNA (cDNA... 44 0.50
30ref|XM_483536.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
31ref|XM_480986.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
32gb|AC121831.3| Mus musculus BAC clone RP24-66F17 from chromosome... 42 2.0
33gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell... 42 2.0
34gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswel... 42 2.0
35ref|NM_079216.3| Drosophila melanogaster Tektin C CG10541-RA (Te... 42 2.0
36gb|AY089428.1| Drosophila melanogaster AT25102 full insert cDNA 42 2.0
37dbj|AK089647.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 2.0
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
39dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
40emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, ... 42 2.0
41dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
42dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
43dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
44dbj|AK099722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
45dbj|AK065010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
46emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in... 42 2.0
47gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20... 42 2.0
48emb|AL929145.12| Mouse DNA sequence from clone RP23-362L7 on chr... 42 2.0
49emb|AJ301696.1|PSP301696 Parapolystoma sp. DNA-14 ITS 1, isolate... 42 2.0
50emb|AJ301691.1|PCU301691 Polystoma cuvieri ITS 1, isolate DNA-185 42 2.0
51emb|AL671238.13| Mouse DNA sequence from clone RP23-67D6 on chro... 42 2.0
52emb|AJ301693.1|WAL301693 Wetapolystoma almae ITS 1, isolate DNA-187 42 2.0
53dbj|AB037417.1| Oryza sativa (japonica cultivar-group) gene for ... 42 2.0
54dbj|AB037416.1| Oryza sativa (japonica cultivar-group) mRNA for ... 42 2.0
55ref|XM_472653.1| Oryza sativa (japonica cultivar-group), predic... 40 7.9
56gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 7.9
57gb|AC093543.8| Trypanosoma brucei chromosome 3 clone RPCI93-5L5,... 40 7.9
58gb|AY093603.1| HIV-1 isolate 95SN1795 from Senegal, complete genome 40 7.9
59emb|AJ249239.1|HIM249239 Human immunodeficiency virus type 1 pro... 40 7.9
60emb|AJ249235.1|HIM249235 Human immunodeficiency virus type 1 pro... 40 7.9
61gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.9
62gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosom... 40 7.9
63gb|AF457090.1| HIV-1 isolate 01KE_NKU3006 from Kenya, partial ge... 40 7.9
64gb|AC146330.33| Medicago truncatula clone mth2-7g7, complete seq... 40 7.9
65gb|AC130408.5| Homo sapiens 3 BAC RP11-17H6 (Roswell Park Cancer... 40 7.9
66gb|AY304496.1| HIV-1 isolate 99UGA08483 from Uganda, partial genome 40 7.9
67gb|AF442565.1| HIV-1 clone TZBFL0025 from Tanzania, partial genome 40 7.9
68gb|AY795903.1| HIV-1 isolate 01YE386 from Yemen gag protein (gag... 40 7.9
69gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Canc... 40 7.9
70emb|BX469922.12| Zebrafish DNA sequence from clone DKEY-30N5 in ... 40 7.9
71emb|BX511115.14| Zebrafish DNA sequence from clone CH211-101B18 ... 40 7.9
72gb|AF361878.1|AF361878 HIV-1 isolate 97TZ08 from Tanzania gag pr... 40 7.9
73gb|AC091937.2| Homo sapiens chromosome 5 clone RP11-327L20, comp... 40 7.9
74gb|DQ008798.1| Lactoris fernandeziana large subunit ribosomal RN... 40 7.9
75gb|AY773341.1| HIV-1 isolate D.ZA.86.R482 from South Africa, com... 40 7.9
76gb|AY773340.1| HIV-1 isolate D.ZA.85.R286 from South Africa, com... 40 7.9
77gb|AY773339.1| HIV-1 isolate D.ZA.85.R214 from South Africa, com... 40 7.9
78emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in ... 40 7.9
79dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
80dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
81dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
82gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, comp... 40 7.9
83gb|AY857176.2| HIV-1 isolate 9430718 from Australia, partial genome 40 7.9
84gb|AY856993.2| HIV-1 isolate 1820526 from Australia, partial genome 40 7.9
85gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, c... 40 7.9
86dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
87emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, c... 40 7.9
88emb|X91387.1|HIVT1U88S Human immunodeficiency virus type 1 vif g... 40 7.9
89emb|X91386.1|HIVT1U86S Human immunodeficiency virus type 1 vif g... 40 7.9
90emb|X91385.1|HIVT1U82S Human immunodeficiency virus type 1 vif g... 40 7.9
91emb|X91384.1|HIVT1U80S Human immunodeficiency virus type 1 vif g... 40 7.9
92gb|AF484521.1| HIV-1 isolate 98UG57137 from Uganda, partial genome 40 7.9
93gb|AF484518.1| HIV-1 isolate 99UGA03349 from Uganda, partial genome 40 7.9
94gb|AF484516.1| HIV-1 isolate 99UGJ32228 from Uganda, partial genome 40 7.9
95gb|AF484511.1| HIV-1 isolate 98UG57140 from Uganda, partial genome 40 7.9
96gb|AF484502.1| HIV-1 isolate 98UG57128 from Uganda, partial genome 40 7.9
97gb|AF484499.1| HIV-1 isolate 99UGK09958 from Uganda, partial genome 40 7.9
98gb|AF484492.1| HIV-1 isolate 99UGF27390 from Uganda, partial genome 40 7.9
99gb|AF484490.1| HIV-1 isolate 99UGF05734 from Uganda, partial genome 40 7.9
100gb|AF484489.1| HIV-1 isolate 99UGE23438 from Uganda, partial genome 40 7.9
101gb|AF484485.1| HIV-1 isolate 99UGD23550 from Uganda, partial genome 40 7.9
102gb|AF484481.1| HIV-1 isolate 99UGB25647 from Uganda, partial genome 40 7.9
103gb|AF484477.1| HIV-1 isolate 99UGA07412 from Uganda, partial genome 40 7.9
104gb|AF042105.1|AF042105 HIV-1 isolate MBCD36 from Australia, comp... 40 7.9
105gb|AF042103.1|AF042103 HIV-1 isolate MBCC54 from Australia, comp... 40 7.9
106dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.9
107gb|U88824.1|U88824 HIV-1 isolate 94UG114 from Uganda complete ge... 40 7.9
108gb|AY905600.1| HIV-1 isolate MCH3684B from Kenya pol protein (po... 40 7.9
109gb|AY905599.1| HIV-1 isolate MCH3684C from Kenya pol protein (po... 40 7.9
110gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
111emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.9
112emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
113emb|AL929072.8| Zebrafish DNA sequence from clone CH211-140B8, c... 40 7.9
114gb|AF004394.1|AF004394 HIV-1 strain AD8, complete genome 40 7.9
115dbj|AP000950.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 7.9
116emb|AL731705.11| Mouse DNA sequence from clone RP23-72M11 on chr... 40 7.9 
>dbj|AK059163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D09, full
           insert sequence
          Length = 638

 Score =  222 bits (112), Expect = 1e-54
 Identities = 166/184 (90%)
 Strand = Plus / Plus

                                                                       
Query: 185 tggagaaggagatgatgttcgggatggccgagaaggagatggagtaccgggtcgagcttt 244
           |||||||||||  |||||||||||||   |||||||||||||||||||||||||| ||||
Sbjct: 202 tggagaaggagcagatgttcgggatgatggagaaggagatggagtaccgggtcgatcttt 261

                                                                       
Query: 245 tcaaccggcttacacatgtttgttttgagaagtgcattgagaaaaggcataaagaagctg 304
           ||||||| ||||||||   ||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 262 tcaaccgacttacacagacttgttttgacaagtgcattgagaaaaggtataaagaagctg 321

                                                                       
Query: 305 aactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcaggtga 364
           | ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 322 agctcaatatgggtgagaacagttgcattgatcgatgtgtttcgaagtactggcaggtaa 381

               
Query: 365 ctaa 368
           ||||
Sbjct: 382 ctaa 385
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>ref|NM_185140.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 213

 Score =  216 bits (109), Expect = 6e-53
 Identities = 160/177 (90%)
 Strand = Plus / Plus

                                                                       
Query: 185 tggagaaggagatgatgttcgggatggccgagaaggagatggagtaccgggtcgagcttt 244
           |||||||||||  |||||||||||||   |||||||||||||||||||||||||| ||||
Sbjct: 29  tggagaaggagcagatgttcgggatgatggagaaggagatggagtaccgggtcgatcttt 88

                                                                       
Query: 245 tcaaccggcttacacatgtttgttttgagaagtgcattgagaaaaggcataaagaagctg 304
           ||||||| ||||||||   ||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 89  tcaaccgacttacacagacttgttttgacaagtgcattgagaaaaggtataaagaagctg 148

                                                                    
Query: 305 aactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcagg 361
           | ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 149 agctcaatatgggtgagaacagttgcattgatcgatgtgtttcgaagtactggcagg 205
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>gb|AY104557.1| Zea mays PCO107819 mRNA sequence
          Length = 678

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                       
Query: 184 ctggagaaggagatgatgttcgggatggccgagaaggagatggagtaccgggtcgagctt 243
           ||||||||||||  |||||| |||||||| |||||||||||||||||| |||| || |||
Sbjct: 190 ctggagaaggagcagatgtttgggatggcggagaaggagatggagtacagggttgatctt 249

                                                                       
Query: 244 ttcaaccggcttacacatgtttgttttgagaagtgcattgagaaaaggcataaagaagct 303
           |||||| |||||||| |    ||||||||||||||| |||| |||||| |||||||||||
Sbjct: 250 ttcaacaggcttacaaagacctgttttgagaagtgcgttgaaaaaaggtataaagaagct 309

                                                                       
Query: 304 gaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcaggtg 363
           || ||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 310 gagctcaatatgggtgagaacagttgcattgatcgatgtgtttcaaagtattggcaggtg 369

                
Query: 364 actaa 368
           |||||
Sbjct: 370 actaa 374
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>gb|AY105695.1| Zea mays PCO107818 mRNA sequence
          Length = 642

 Score =  172 bits (87), Expect = 8e-40
 Identities = 150/171 (87%)
 Strand = Plus / Plus

                                                                       
Query: 198 gatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttcaaccggcttac 257
           |||||| |||||||| |||||||||||||||||| |||| || ||||||||| |||||||
Sbjct: 250 gatgtttgggatggcggagaaggagatggagtacagggttgatcttttcaacaggcttac 309

                                                                       
Query: 258 acatgtttgttttgagaagtgcattgagaaaaggcataaagaagctgaactcaacatggg 317
           |||    |||||| | ||||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct: 310 acagacctgttttaacaagtgcattgaaaaaaggtataaagaagctgagctcaatatggg 369

                                                              
Query: 318 agagaacagttgcattgaccggtgtgtttcgaagtactggcaggtgactaa 368
            ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 370 cgagaacagttgcattgatcgatgtgtttcaaagtattggcaggtgactaa 420
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>ref|XM_477225.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 759

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                       
Query: 188 agaaggagatgatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttca 247
           ||||||||  |||||| ||  |||| ||||| |||||||| ||  |||| || |||||||
Sbjct: 262 agaaggagcagatgtttggattggcagagaaagagatggaatatagggtggatcttttca 321

                                                                       
Query: 248 accggcttacacatgtttgttttgagaagtgcattgagaaaaggcataaagaagctgaac 307
           | |||||||||||    |||||    ||||||||||||||||||||||||||||||||||
Sbjct: 322 atcggcttacacaaacatgtttcagcaagtgcattgagaaaaggcataaagaagctgaac 381

                                                                       
Query: 308 tcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcaggtgacta 367
           | || ||||| ||||| || |||||||| || |||| ||||||||| |||||||||||||
Sbjct: 382 taaatatgggtgagaatagctgcattgatcgatgtgcttcgaagtattggcaggtgacta 441

            
Query: 368 a 368
           |
Sbjct: 442 a 442
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>dbj|AK108213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E01, full
           insert sequence
          Length = 759

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                       
Query: 188 agaaggagatgatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttca 247
           ||||||||  |||||| ||  |||| ||||| |||||||| ||  |||| || |||||||
Sbjct: 262 agaaggagcagatgtttggattggcagagaaagagatggaatatagggtggatcttttca 321

                                                                       
Query: 248 accggcttacacatgtttgttttgagaagtgcattgagaaaaggcataaagaagctgaac 307
           | |||||||||||    |||||    ||||||||||||||||||||||||||||||||||
Sbjct: 322 atcggcttacacaaacatgtttcagcaagtgcattgagaaaaggcataaagaagctgaac 381

                                                                       
Query: 308 tcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcaggtgacta 367
           | || ||||| ||||| || |||||||| || |||| ||||||||| |||||||||||||
Sbjct: 382 taaatatgggtgagaatagctgcattgatcgatgtgcttcgaagtattggcaggtgacta 441

            
Query: 368 a 368
           |
Sbjct: 442 a 442
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                            
Query: 293      ataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagt 352
                ||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||
Sbjct: 34365939 ataaagaagctgagctcaatatgggtgagaacagttgcattgatcgatgtgtttcgaagt 34365880

                         
Query: 353      actggcagg 361
                |||||||||
Sbjct: 34365879 actggcagg 34365871



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 198      gatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttcaaccgg 252
                |||||||||||||   |||||||||||||||||||||||||| ||||||||||||
Sbjct: 34366875 gatgttcgggatgatggagaaggagatggagtaccgggtcgatcttttcaaccgg 34366821



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 264      ttgttttgagaagtgcattgagaaaagg 291
                ||||||||| ||||||||||||||||||
Sbjct: 34366242 ttgttttgacaagtgcattgagaaaagg 34366215
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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                         
Query: 293   ataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagt 352
             ||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||
Sbjct: 83755 ataaagaagctgagctcaatatgggtgagaacagttgcattgatcgatgtgtttcgaagt 83814

                      
Query: 353   actggcagg 361
             |||||||||
Sbjct: 83815 actggcagg 83823



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                    
Query: 198   gatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttcaaccgg 252
             |||||||||||||   |||||||||||||||||||||||||| ||||||||||||
Sbjct: 82819 gatgttcgggatgatggagaaggagatggagtaccgggtcgatcttttcaaccgg 82873



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 264   ttgttttgagaagtgcattgagaaaagg 291
             ||||||||| ||||||||||||||||||
Sbjct: 83452 ttgttttgacaagtgcattgagaaaagg 83479
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                            
Query: 293      ataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagt 352
                ||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||
Sbjct: 34456411 ataaagaagctgagctcaatatgggtgagaacagttgcattgatcgatgtgtttcgaagt 34456352

                         
Query: 353      actggcagg 361
                |||||||||
Sbjct: 34456351 actggcagg 34456343



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 198      gatgttcgggatggccgagaaggagatggagtaccgggtcgagcttttcaaccgg 252
                |||||||||||||   |||||||||||||||||||||||||| ||||||||||||
Sbjct: 34457347 gatgttcgggatgatggagaaggagatggagtaccgggtcgatcttttcaaccgg 34457293



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 264      ttgttttgagaagtgcattgagaaaagg 291
                ||||||||| ||||||||||||||||||
Sbjct: 34456714 ttgttttgacaagtgcattgagaaaagg 34456687
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>ref|NM_128506.2| Arabidopsis thaliana TIM10; protein translocase AT2G29530 (TIM10)
           mRNA, complete cds
          Length = 501

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 298 gaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactgg 357
           |||||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 186 gaagctgagctaaacatgggtgagaatagttgcatcgaccgttgtgtttccaagtactgg 245

                
Query: 358 caggt 362
           |||||
Sbjct: 246 caggt 250
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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
             sequence
          Length = 131743

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 298   gaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactgg 357
             |||||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 18484 gaagctgagctaaacatgggtgagaatagttgcatcgaccgttgtgtttccaagtactgg 18543

                  
Query: 358   caggt 362
             |||||
Sbjct: 18544 caggt 18548
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                           
Query: 289     aggcataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcg 348
               |||||||||||||||||||| || ||||| ||||| || |||||||| || |||| ||||
Sbjct: 8006038 aggcataaagaagctgaactaaatatgggtgagaatagctgcattgatcgatgtgcttcg 8005979

                            
Query: 349     aagtactggcagg 361
               ||||| |||||||
Sbjct: 8005978 aagtattggcagg 8005966
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>gb|BT004739.1| Arabidopsis thaliana At2g29530 gene, complete cds
          Length = 252

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 298 gaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactgg 357
           |||||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 139 gaagctgagctaaacatgggtgagaatagttgcatcgaccgttgtgtttccaagtactgg 198

                
Query: 358 caggt 362
           |||||
Sbjct: 199 caggt 203
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>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1341_A08
          Length = 128955

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                         
Query: 289   aggcataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcg 348
             |||||||||||||||||||| || ||||| ||||| || |||||||| || |||| ||||
Sbjct: 44235 aggcataaagaagctgaactaaatatgggtgagaatagctgcattgatcgatgtgcttcg 44176

                          
Query: 349   aagtactggcagg 361
             ||||| |||||||
Sbjct: 44175 aagtattggcagg 44163
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>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0418E08
          Length = 141040

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                          
Query: 289    aggcataaagaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcg 348
              |||||||||||||||||||| || ||||| ||||| || |||||||| || |||| ||||
Sbjct: 122397 aggcataaagaagctgaactaaatatgggtgagaatagctgcattgatcgatgtgcttcg 122338

                           
Query: 349    aagtactggcagg 361
              ||||| |||||||
Sbjct: 122337 aagtattggcagg 122325
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>gb|AF150093.1|AF150093 Arabidopsis thaliana small zinc finger-like protein (TIM10) mRNA,
           complete cds
          Length = 252

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 298 gaagctgaactcaacatgggagagaacagttgcattgaccggtgtgtttcgaagtactgg 357
           |||||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 139 gaagctgagctaaacatgggtgagaatagttgcatcgaccgttgtgtttccaagtactgg 198

                
Query: 358 caggt 362
           |||||
Sbjct: 199 caggt 203
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>gb|AF150096.1|AF150096 Lycopersicon esculentum small zinc finger-like protein (TIM10)
           mRNA, complete cds
          Length = 367

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 310 aacatgggagagaacagttgcattgaccggtgtgtttcgaagtactggcaggtgactaac 369
           |||||||| || || ||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct: 192 aacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaac 251

                
Query: 370 attgt 374
            ||||
Sbjct: 252 cttgt 256
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>gb|AF150099.1|AF150099 Mesembryanthemum crystallinum small zinc finger-like protein
           (TIM10) mRNA, partial cds
          Length = 378

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 322 aacagttgcattgaccggtgtgtttcgaagtactggcaggtgactaa 368
           |||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 16  aacagttgcattgatcgctgtgtttcaaagtattggcaggtgactaa 62
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>emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chromosome 1 Contains a
             putative novel transcript, a gene for a novel protein
             (FLJ11269), a processed pseudogene for cyclin T2 (CCNT2)
             and a CpG island, complete sequence
          Length = 172805

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 471   ttcgtttttgttttggaatgtt 492
             ||||||||||||||||||||||
Sbjct: 36445 ttcgtttttgttttggaatgtt 36424
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>gb|AC010036.6| Drosophila melanogaster 3L BAC RP98-7K20 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 190369

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 250  cggcttacacatgtttgttttg 271
            ||||||||||||||||||||||
Sbjct: 9854 cggcttacacatgtttgttttg 9833
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>gb|AC093957.3| Drosophila melanogaster 3L BAC RP98-14E19 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 182212

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 250   cggcttacacatgtttgttttg 271
             ||||||||||||||||||||||
Sbjct: 21634 cggcttacacatgtttgttttg 21613
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>gb|AC158675.4| Mus musculus 6 BAC RP23-180J21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226948

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 284   agaaaaggcataaagaagctga 305
             ||||||||||||||||||||||
Sbjct: 95671 agaaaaggcataaagaagctga 95650
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>emb|X91372.1|HIVT1U466 Human immunodeficiency virus type 1 vif gene (U46-6.seq)
          Length = 579

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 gaccaactaattcatatatact 541
           ||||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatatact 331
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>emb|X91371.1|HIVT1U460 Human immunodeficiency virus type 1 vif gene (U46-0.seq)
          Length = 579

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 gaccaactaattcatatatact 541
           ||||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatatact 331
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>emb|X91362.1|HIVT1U258 Human immunodeficiency virus type 1 vif gene (U25-8.seq)
          Length = 579

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 gaccaactaattcatatatact 541
           ||||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatatact 331
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>emb|X91361.1|HIVT1U256 Human immunodeficiency virus type 1 vif gene (U25-6.seq)
          Length = 579

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 gaccaactaattcatatatact 541
           ||||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatatact 331
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>gb|AF484488.1| HIV-1 isolate 99UGE22831 from Uganda, partial genome
          Length = 8817

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 520  gaccaactaattcatatatact 541
            ||||||||||||||||||||||
Sbjct: 4552 gaccaactaattcatatatact 4573
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>gb|AE003534.3| Drosophila melanogaster chromosome 3L, section 51 of 83 of the complete
             sequence
          Length = 263717

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 250   cggcttacacatgtttgttttg 271
             ||||||||||||||||||||||
Sbjct: 71410 cggcttacacatgtttgttttg 71389
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>gb|BC084892.1| Xenopus laevis hypothetical LOC495407, mRNA (cDNA clone MGC:86416
            IMAGE:7011794), complete cds
          Length = 1976

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 175  cagagagagctggagaaggaga 196
            ||||||||||||||||||||||
Sbjct: 1382 cagagagagctggagaaggaga 1403
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>ref|XM_483536.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1892

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  ccccgccgccgccgagctcgc 103
           |||||||||||||||||||||
Sbjct: 438 ccccgccgccgccgagctcgc 458
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>ref|XM_480986.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1354

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 79  cgacccccgccgccgccgagc 99
           |||||||||||||||||||||
Sbjct: 202 cgacccccgccgccgccgagc 182
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>gb|AC121831.3| Mus musculus BAC clone RP24-66F17 from chromosome 2, complete sequence
          Length = 190963

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tgcagagagagctggagaagg 193
             |||||||||||||||||||||
Sbjct: 56171 tgcagagagagctggagaagg 56151
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>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 173558

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gagctggagaaggagatgatg 201
             |||||||||||||||||||||
Sbjct: 96263 gagctggagaaggagatgatg 96243
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>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 173386

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  gagctggagaaggagatgatg 201
            |||||||||||||||||||||
Sbjct: 1192 gagctggagaaggagatgatg 1172
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>ref|NM_079216.3| Drosophila melanogaster Tektin C CG10541-RA (Tektin-C), mRNA
          Length = 1529

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gagctggagaaggagatgatg 201
            |||||||||||||||||||||
Sbjct: 1048 gagctggagaaggagatgatg 1068
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>gb|AY089428.1| Drosophila melanogaster AT25102 full insert cDNA
          Length = 1539

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gagctggagaaggagatgatg 201
            |||||||||||||||||||||
Sbjct: 1039 gagctggagaaggagatgatg 1059
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>dbj|AK089647.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830006N19 product:unclassifiable, full
            insert sequence
          Length = 3670

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 173  tgcagagagagctggagaagg 193
            |||||||||||||||||||||
Sbjct: 1207 tgcagagagagctggagaagg 1187
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 83       ccccgccgccgccgagctcgc 103
                |||||||||||||||||||||
Sbjct: 26789436 ccccgccgccgccgagctcgc 26789416



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      cgacccccgccgccgccgagc 99
               |||||||||||||||||||||
Sbjct: 9069340 cgacccccgccgccgccgagc 9069360
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>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0003H03
          Length = 157905

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    cgacccccgccgccgccgagc 99
             |||||||||||||||||||||
Sbjct: 79650 cgacccccgccgccgccgagc 79670
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>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence
          Length = 194853

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    ttgttttgagaagtgcattga 284
              |||||||||||||||||||||
Sbjct: 100835 ttgttttgagaagtgcattga 100815
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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     ccccgccgccgccgagctcgc 103
              |||||||||||||||||||||
Sbjct: 132778 ccccgccgccgccgagctcgc 132758
to top
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0012K14
          Length = 155544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   cgacccccgccgccgccgagc 99
            |||||||||||||||||||||
Sbjct: 4834 cgacccccgccgccgccgagc 4854
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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    ccccgccgccgccgagctcgc 103
             |||||||||||||||||||||
Sbjct: 52226 ccccgccgccgccgagctcgc 52206
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>dbj|AK099722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088K05, full
           insert sequence
          Length = 1892

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  ccccgccgccgccgagctcgc 103
           |||||||||||||||||||||
Sbjct: 438 ccccgccgccgccgagctcgc 458
to top
>dbj|AK065010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F02, full
           insert sequence
          Length = 1354

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 79  cgacccccgccgccgccgagc 99
           |||||||||||||||||||||
Sbjct: 202 cgacccccgccgccgccgagc 182
to top
>emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in linkage group 2, complete
              sequence
          Length = 184244

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    ttgttttgagaagtgcattga 284
              |||||||||||||||||||||
Sbjct: 137432 ttgttttgagaagtgcattga 137452
to top
>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete
              sequence
          Length = 284268

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    gagctggagaaggagatgatg 201
              |||||||||||||||||||||
Sbjct: 265500 gagctggagaaggagatgatg 265480
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>emb|AL929145.12| Mouse DNA sequence from clone RP23-362L7 on chromosome 2, complete
             sequence
          Length = 70534

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   tgcagagagagctggagaagg 193
             |||||||||||||||||||||
Sbjct: 67944 tgcagagagagctggagaagg 67964
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>emb|AJ301696.1|PSP301696 Parapolystoma sp. DNA-14 ITS 1, isolate DNA-14
          Length = 768

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 288 aaggcataaagaagctgaact 308
           |||||||||||||||||||||
Sbjct: 255 aaggcataaagaagctgaact 275
to top
>emb|AJ301691.1|PCU301691 Polystoma cuvieri ITS 1, isolate DNA-185
          Length = 729

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 288 aaggcataaagaagctgaact 308
           |||||||||||||||||||||
Sbjct: 271 aaggcataaagaagctgaact 291
to top
>emb|AL671238.13| Mouse DNA sequence from clone RP23-67D6 on chromosome 4, complete
             sequence
          Length = 216190

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 447   aggacaccgtctccatgtttctcct 471
             ||||||| |||||||||||||||||
Sbjct: 49254 aggacacagtctccatgtttctcct 49230
to top
>emb|AJ301693.1|WAL301693 Wetapolystoma almae ITS 1, isolate DNA-187
          Length = 769

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 288 aaggcataaagaagctgaact 308
           |||||||||||||||||||||
Sbjct: 267 aaggcataaagaagctgaact 287
to top
>dbj|AB037417.1| Oryza sativa (japonica cultivar-group) gene for aspartate carbamoyl
            transferase, complete cds
          Length = 9188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   cgacccccgccgccgccgagc 99
            |||||||||||||||||||||
Sbjct: 4478 cgacccccgccgccgccgagc 4458
to top
>dbj|AB037416.1| Oryza sativa (japonica cultivar-group) mRNA for aspartate carbamoyl
           transferase, complete cds
          Length = 1386

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 79  cgacccccgccgccgccgagc 99
           |||||||||||||||||||||
Sbjct: 139 cgacccccgccgccgccgagc 119
to top
>ref|XM_472653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gacgacccccgccgccgccg 96
          ||||||||||||||||||||
Sbjct: 3  gacgacccccgccgccgccg 22
to top
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 463     gtttctccttcgtttttgtt 482
               ||||||||||||||||||||
Sbjct: 1463561 gtttctccttcgtttttgtt 1463542
to top
>gb|AC093543.8| Trypanosoma brucei chromosome 3 clone RPCI93-5L5, complete sequence
          Length = 148711

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   gtttctccttcgtttttgtt 482
             ||||||||||||||||||||
Sbjct: 37773 gtttctccttcgtttttgtt 37754
to top
>gb|AY093603.1| HIV-1 isolate 95SN1795 from Senegal, complete genome
          Length = 8803

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4552 gaccaactaattcatatata 4571
to top
>emb|AJ249239.1|HIM249239 Human immunodeficiency virus type 1 proviral mRNA for partial ENV
            protein, partial GAG protein, partial NEF protein and
            partial POL protein isolate 96CM-MP535
          Length = 8604

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4546 gaccaactaattcatatata 4565
to top
>emb|AJ249235.1|HIM249235 Human immunodeficiency virus type 1 proviral mRNA for partial ENV
            protein, partial GAG protein, partial NEF protein and
            partial POL protein isolate 97ZR-EQTB11
          Length = 8600

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4542 gaccaactaattcatatata 4561
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      cgcggcatctcgacgacccc 85
               ||||||||||||||||||||
Sbjct: 3118721 cgcggcatctcgacgacccc 3118702
to top
>gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosome 13, complete
             sequence
          Length = 191713

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   cagagagagctggagaagga 194
             ||||||||||||||||||||
Sbjct: 86137 cagagagagctggagaagga 86156
to top
>gb|AF457090.1| HIV-1 isolate 01KE_NKU3006 from Kenya, partial genome
          Length = 8848

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AC146330.33| Medicago truncatula clone mth2-7g7, complete sequence
          Length = 117139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 328   tgcattgaccggtgtgtttcgaagtactggca 359
             ||||||||||| |||||||| || ||||||||
Sbjct: 78089 tgcattgaccgctgtgtttccaaatactggca 78120
to top
>gb|AC130408.5| Homo sapiens 3 BAC RP11-17H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 33001

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 462   tgtttctccttcgtttttgttttg 485
             |||||||||||| |||||||||||
Sbjct: 26510 tgtttctccttcctttttgttttg 26533
to top
>gb|AY304496.1| HIV-1 isolate 99UGA08483 from Uganda, partial genome
          Length = 8821

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF442565.1| HIV-1 clone TZBFL0025 from Tanzania, partial genome
          Length = 7165

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 2906 gaccaactaattcatatata 2925
to top
>gb|AY795903.1| HIV-1 isolate 01YE386 from Yemen gag protein (gag) gene, partial cds;
            and pol protein (pol), vif protein (vif), vpr protein
            (vpr), tat protein (tat), rev protein (rev), vpu protein
            (vpu), envelope glycoprotein (env), and nef protein (nef)
            genes, complete cds
          Length = 8765

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4549 gaccaactaattcatatata 4568
to top
>gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191655

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    agaagtgcattgagaaaaggcata 295
              ||||||||||| ||||||||||||
Sbjct: 108325 agaagtgcattaagaaaaggcata 108348
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>emb|BX469922.12| Zebrafish DNA sequence from clone DKEY-30N5 in linkage group 24,
            complete sequence
          Length = 200409

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 462  tgtttctccttcgtttttgttttg 485
            ||||||| ||||||||||||||||
Sbjct: 9031 tgtttcttcttcgtttttgttttg 9054
to top
>emb|BX511115.14| Zebrafish DNA sequence from clone CH211-101B18 in linkage group 19,
             complete sequence
          Length = 169614

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gagagagctggagaaggaga 196
             ||||||||||||||||||||
Sbjct: 21642 gagagagctggagaaggaga 21623
to top
>gb|AF361878.1|AF361878 HIV-1 isolate 97TZ08 from Tanzania gag protein (gag), partial cds;
            and pol protein (pol), vif protein (vif), vpr protein
            (vpr), tat protein (tat), rev protein (rev), vpu protein
            (vpu), envelope glycoprotein (env), and nef protein (nef)
            genes, complete cds
          Length = 8781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4562 gaccaactaattcatatata 4581
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>gb|AC091937.2| Homo sapiens chromosome 5 clone RP11-327L20, complete sequence
          Length = 119906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   tacacatgtttgttttgaga 274
             ||||||||||||||||||||
Sbjct: 68132 tacacatgtttgttttgaga 68151
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>gb|DQ008798.1| Lactoris fernandeziana large subunit ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 3351

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  gagtttttctcgccgctgct 45
           ||||||||||||||||||||
Sbjct: 334 gagtttttctcgccgctgct 315
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>gb|AY773341.1| HIV-1 isolate D.ZA.86.R482 from South Africa, complete genome
          Length = 8640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4620 gaccaactaattcatatata 4639
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>gb|AY773340.1| HIV-1 isolate D.ZA.85.R286 from South Africa, complete genome
          Length = 8670

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4621 gaccaactaattcatatata 4640
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>gb|AY773339.1| HIV-1 isolate D.ZA.85.R214 from South Africa, complete genome
          Length = 8640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4573 gaccaactaattcatatata 4592
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>emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in linkage group 18,
             complete sequence
          Length = 251217

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   aattcatatatactgttgaa 547
             ||||||||||||||||||||
Sbjct: 67111 aattcatatatactgttgaa 67130
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       gacgacccccgccgccgccg 96
                ||||||||||||||||||||
Sbjct: 22217854 gacgacccccgccgccgccg 22217835
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 469     ccttcgtttttgttttggaatgtt 492
               ||||||||||||||||| ||||||
Sbjct: 9259955 ccttcgtttttgttttgcaatgtt 9259978
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      ccgccgccgccgagctcgcg 104
               ||||||||||||||||||||
Sbjct: 5784146 ccgccgccgccgagctcgcg 5784127
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>gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, complete sequence
          Length = 173845

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    ccgccgccgccgagctcgcg 104
             ||||||||||||||||||||
Sbjct: 67961 ccgccgccgccgagctcgcg 67942
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>gb|AY857176.2| HIV-1 isolate 9430718 from Australia, partial genome
          Length = 8882

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4685 gaccaactaattcatatata 4704
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>gb|AY856993.2| HIV-1 isolate 1820526 from Australia, partial genome
          Length = 7435

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4113 gaccaactaattcatatata 4132
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>gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ccgccgccgccgagctcgcg 104
              ||||||||||||||||||||
Sbjct: 174150 ccgccgccgccgagctcgcg 174131
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ccgccgccgccgagctcgcg 104
              ||||||||||||||||||||
Sbjct: 108848 ccgccgccgccgagctcgcg 108829
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>emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, complete sequence
          Length = 226168

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   aattcatatatactgttgaa 547
             ||||||||||||||||||||
Sbjct: 71101 aattcatatatactgttgaa 71120
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>emb|X91387.1|HIVT1U88S Human immunodeficiency virus type 1 vif gene (U8-8.seq)
          Length = 579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 gaccaactaattcatatata 539
           ||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatata 329
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>emb|X91386.1|HIVT1U86S Human immunodeficiency virus type 1 vif gene (U8-6.seq)
          Length = 579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 gaccaactaattcatatata 539
           ||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatata 329
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>emb|X91385.1|HIVT1U82S Human immunodeficiency virus type 1 vif gene (U8-2.seq)
          Length = 579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 gaccaactaattcatatata 539
           ||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatata 329
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>emb|X91384.1|HIVT1U80S Human immunodeficiency virus type 1 vif gene (U8-0.seq)
          Length = 579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 gaccaactaattcatatata 539
           ||||||||||||||||||||
Sbjct: 310 gaccaactaattcatatata 329
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>gb|AF484521.1| HIV-1 isolate 98UG57137 from Uganda, partial genome
          Length = 8392

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484518.1| HIV-1 isolate 99UGA03349 from Uganda, partial genome
          Length = 8793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4540 gaccaactaattcatatata 4559
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>gb|AF484516.1| HIV-1 isolate 99UGJ32228 from Uganda, partial genome
          Length = 8802

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
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>gb|AF484511.1| HIV-1 isolate 98UG57140 from Uganda, partial genome
          Length = 8788

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
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>gb|AF484502.1| HIV-1 isolate 98UG57128 from Uganda, partial genome
          Length = 8811

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484499.1| HIV-1 isolate 99UGK09958 from Uganda, partial genome
          Length = 8782

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4549 gaccaactaattcatatata 4568
to top
>gb|AF484492.1| HIV-1 isolate 99UGF27390 from Uganda, partial genome
          Length = 8804

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484490.1| HIV-1 isolate 99UGF05734 from Uganda, partial genome
          Length = 8840

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
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>gb|AF484489.1| HIV-1 isolate 99UGE23438 from Uganda, partial genome
          Length = 8811

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484485.1| HIV-1 isolate 99UGD23550 from Uganda, partial genome
          Length = 8825

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484481.1| HIV-1 isolate 99UGB25647 from Uganda, partial genome
          Length = 8806

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4555 gaccaactaattcatatata 4574
to top
>gb|AF484477.1| HIV-1 isolate 99UGA07412 from Uganda, partial genome
          Length = 8794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4552 gaccaactaattcatatata 4571
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>gb|AF042105.1|AF042105 HIV-1 isolate MBCD36 from Australia, complete genome
          Length = 8669

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4705 gaccaactaattcatatata 4724
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>gb|AF042103.1|AF042103 HIV-1 isolate MBCC54 from Australia, complete genome
          Length = 8709

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4710 gaccaactaattcatatata 4729
to top
>dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, section 32/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aagaaagaagaagggcaaaa 20
             ||||||||||||||||||||
Sbjct: 36261 aagaaagaagaagggcaaaa 36280
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>gb|U88824.1|U88824 HIV-1 isolate 94UG114 from Uganda complete genome
          Length = 8952

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 4705 gaccaactaattcatatata 4724
to top
>gb|AY905600.1| HIV-1 isolate MCH3684B from Kenya pol protein (pol) gene, partial
            cds; vif protein (vif) and vpr protein (vpr) genes,
            complete cds; tat protein (tat) and rev protein (rev)
            genes, partial cds; vpu protein (vpu) gene, complete cds;
            and envelope glycoprotein (env) gene, partial cds
          Length = 3861

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 1539 gaccaactaattcatatata 1558
to top
>gb|AY905599.1| HIV-1 isolate MCH3684C from Kenya pol protein (pol) gene, partial
            cds; vif protein (vif) and vpr protein (vpr) genes,
            complete cds; tat protein (tat) and rev protein (rev)
            genes, partial cds; vpu protein (vpu) gene, complete cds;
            and envelope glycoprotein (env) gene, partial cds
          Length = 3855

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 1539 gaccaactaattcatatata 1558
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 469     ccttcgtttttgttttggaatgtt 492
               ||||||||||||||||| ||||||
Sbjct: 9259840 ccttcgtttttgttttgcaatgtt 9259863
to top
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 190718

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 469    ccttcgtttttgttttggaatgtt 492
              ||||||||||||||||| ||||||
Sbjct: 179100 ccttcgtttttgttttgcaatgtt 179077
to top
>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08,
             complete sequence
          Length = 118959

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    gacgacccccgccgccgccg 96
             ||||||||||||||||||||
Sbjct: 87715 gacgacccccgccgccgccg 87696
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>emb|AL929072.8| Zebrafish DNA sequence from clone CH211-140B8, complete sequence
          Length = 160432

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gagagagctggagaaggaga 196
             ||||||||||||||||||||
Sbjct: 15162 gagagagctggagaaggaga 15143
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>gb|AF004394.1|AF004394 HIV-1 strain AD8, complete genome
          Length = 9715

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gaccaactaattcatatata 539
            ||||||||||||||||||||
Sbjct: 5350 gaccaactaattcatatata 5369
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>dbj|AP000950.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B630D22,
            LL56-APP region, complete sequence
          Length = 42159

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aagaaagaagaagggcaaaa 20
            ||||||||||||||||||||
Sbjct: 7460 aagaaagaagaagggcaaaa 7479
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>emb|AL731705.11| Mouse DNA sequence from clone RP23-72M11 on chromosome X, complete
             sequence
          Length = 119774

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   ttctccttcgtttttgtttt 484
             ||||||||||||||||||||
Sbjct: 51077 ttctccttcgtttttgtttt 51096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,507,699
Number of Sequences: 3902068
Number of extensions: 6507699
Number of successful extensions: 148395
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147313
Number of HSP's gapped (non-prelim): 1078
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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