ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472276.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 218 bits (110), Expect = 2e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 172 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 231 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 80 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 139 Query: 232 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 291 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 140 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 199 Query: 292 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 337 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 200 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 245 Score = 200 bits (101), Expect = 4e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 390 tcccaggagatcttccgcggaagcaagctgttccaggtgtatgtggtgatgggcaccacg 449 ||||| |||||||||||||| |||| | |||||||| ||| |||||| |||| || ||| Sbjct: 283 tcccaagagatcttccgcggcagcacgtggttccaggcgtacgtggtgctggggacgacg 342 Query: 450 gtggggctgttcctgccgctggcgcacgtcctgggcgggttcgcgcgcggcgacgacgct 509 ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 343 gtggggctgttcctgccgctggcgcacgtgctgggcggattcgcgcgcggggacgacggc 402 Query: 510 gcggtgcgctccgcgacgccgcacctgttcctgctctcgtgccagatcctcacggagaac 569 |||||| | || |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 403 gcggtgaggtcggcgacgccgcacctgttcctcctctcgtgccagatcctcaccgagaac 462 Query: 570 atcgtcggc 578 | |||||| Sbjct: 463 gtggtcggc 471
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 218 bits (110), Expect = 2e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 172 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 231 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 97464 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 97523 Query: 232 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 291 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 97524 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 97583 Query: 292 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 337 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 97584 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 97629 Score = 182 bits (92), Expect = 9e-43 Identities = 143/160 (89%) Strand = Plus / Plus Query: 419 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 478 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 97782 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 97841 Query: 479 cctgggcgggttcgcgcgcggcgacgacgctgcggtgcgctccgcgacgccgcacctgtt 538 |||||||| ||||||||||| ||||||| |||||| | || ||||||||||||||||| Sbjct: 97842 gctgggcggattcgcgcgcggggacgacggcgcggtgaggtcggcgacgccgcacctgtt 97901 Query: 539 cctgctctcgtgccagatcctcacggagaacatcgtcggc 578 ||| |||||||||||||||||||| |||||| | |||||| Sbjct: 97902 cctcctctcgtgccagatcctcaccgagaacgtggtcggc 97941 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 93 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 137 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 97373 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 97417
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 218 bits (110), Expect = 2e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 172 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 231 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 19005539 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 19005598 Query: 232 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 291 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 19005599 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 19005658 Query: 292 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 337 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 19005659 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 19005704 Score = 182 bits (92), Expect = 9e-43 Identities = 143/160 (89%) Strand = Plus / Plus Query: 419 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 478 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 19005857 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 19005916 Query: 479 cctgggcgggttcgcgcgcggcgacgacgctgcggtgcgctccgcgacgccgcacctgtt 538 |||||||| ||||||||||| ||||||| |||||| | || ||||||||||||||||| Sbjct: 19005917 gctgggcggattcgcgcgcggggacgacggcgcggtgaggtcggcgacgccgcacctgtt 19005976 Query: 539 cctgctctcgtgccagatcctcacggagaacatcgtcggc 578 ||| |||||||||||||||||||| |||||| | |||||| Sbjct: 19005977 cctcctctcgtgccagatcctcaccgagaacgtggtcggc 19006016 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 534 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggc 578 ||||| || |||||||||||||||||||| |||||| | |||||| Sbjct: 17126886 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggc 17126930 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcct 285 ||||||||||||||||||||| Sbjct: 29304945 tcccgctcatcgacctcgcct 29304965 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 93 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 137 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 19005448 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 19005492
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 455 gctgttcctgccgctggcgcacgtc 479 ||||||||||||||||||||||||| Sbjct: 2265654 gctgttcctgccgctggcgcacgtc 2265678 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 8396209 gtcgtcaccaccctctacctc 8396189
>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19, complete sequence Length = 169559 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 534 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggc 578 ||||| || |||||||||||||||||||| |||||| | |||||| Sbjct: 71183 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggc 71227
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 158 ggagcggcagccgtcgtcggcg 179 |||||||||||||||||||||| Sbjct: 4168143 ggagcggcagccgtcgtcggcg 4168122
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 cgtcatcgagctccagctcgtc 230 |||||||||||||||||||||| Sbjct: 5944913 cgtcatcgagctccagctcgtc 5944934
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 tgttcctgccgctggcgcacgt 478 |||||||||||||||||||||| Sbjct: 4913886 tgttcctgccgctggcgcacgt 4913907 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cggtgcgctccgcgacgccg 530 |||||||||||||||||||| Sbjct: 2632371 cggtgcgctccgcgacgccg 2632352
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 158 ggagcggcagccgtcgtcggcg 179 |||||||||||||||||||||| Sbjct: 4168130 ggagcggcagccgtcgtcggcg 4168109
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 158 ggagcggcagccgtcgtcggcg 179 |||||||||||||||||||||| Sbjct: 110539 ggagcggcagccgtcgtcggcg 110518
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 455 gctgttcctgccgctggcgcac 476 |||||||||||||||||||||| Sbjct: 447252 gctgttcctgccgctggcgcac 447273
>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete sequences Length = 173185 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 415 agctgttccaggtgtatgtggt 436 |||||||||||||||||||||| Sbjct: 78658 agctgttccaggtgtatgtggt 78637
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcct 285 ||||||||||||||||||||| Sbjct: 116 tcccgctcatcgacctcgcct 136
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 308 cctcatcgtcctctcccgcctcgcc 332 ||||||| ||||||||||||||||| Sbjct: 3533142 cctcatcctcctctcccgcctcgcc 3533118
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 catcgacctcgccttcccggt 292 ||||||||||||||||||||| Sbjct: 67420 catcgacctcgccttcccggt 67440
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcct 285 ||||||||||||||||||||| Sbjct: 107991 tcccgctcatcgacctcgcct 108011
>emb|AL022071.1|SPBC354 S.pombe chromosome II cosmid c354 Length = 44124 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gcctcgccttcccttcgctcc 345 ||||||||||||||||||||| Sbjct: 26893 gcctcgccttcccttcgctcc 26873
>ref|NM_001021140.1| Schizosaccharomyces pombe 972h- glucoamylase (SPBC354.10), partial mRNA Length = 2892 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gcctcgccttcccttcgctcc 345 ||||||||||||||||||||| Sbjct: 150 gcctcgccttcccttcgctcc 130
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 26719880 gtcgtcaccaccctctacctc 26719860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 18562873 tcccgctcatcgacctcgcc 18562854 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 18502719 tcccgctcatcgacctcgcc 18502700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 308 cctcatcgtcctctcccgcctcgcc 332 ||||||| ||||||||||||||||| Sbjct: 3533253 cctcatcctcctctcccgcctcgcc 3533229
>dbj|AB210848.1| Lemna gibba LgGI H1 mRNA for GI homologue, complete cds Length = 3936 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 cgagctccagctcgtcgccttcatc 239 |||||||||||||||| |||||||| Sbjct: 2307 cgagctccagctcgtccccttcatc 2331
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 308 cctcatcgtcctctcccgcctcgcc 332 ||||||| ||||||||||||||||| Sbjct: 50795 cctcatcctcctctcccgcctcgcc 50771
>gb|AF230488.1|AF230488 Streptomyces coelicolor A3(2) F23a (f23a) gene, complete cds; and F23b (f23b) gene, partial cds Length = 1270 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 catcgacctcgccttcccggt 292 ||||||||||||||||||||| Sbjct: 847 catcgacctcgccttcccggt 827
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 131407 gtcgtcaccaccctctacctc 131387
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 179 gatgctggggggcgtcatgggctcg 203 ||||||||| ||||||||||||||| Sbjct: 6714248 gatgctgggcggcgtcatgggctcg 6714224
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 63222 gtcgtcaccaccctctacctc 63202
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcct 285 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gtcgtcaccaccctctacctc 311 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcct 285 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 gctgttcctgccgctggcgc 474 |||||||||||||||||||| Sbjct: 320191 gctgttcctgccgctggcgc 320172
>gb|AC152106.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A4, complete sequence Length = 34754 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ccgccgcgcactccgccgcg 389 |||||||||||||||||||| Sbjct: 26131 ccgccgcgcactccgccgcg 26112
>ref|XM_529908.1| PREDICTED: Pan troglodytes LOC455113 (LOC455113), mRNA Length = 566 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 gtggtgatgggcaccacggtgggg 455 ||||||| |||||||||||||||| Sbjct: 152 gtggtgaggggcaccacggtgggg 129
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|XM_465737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 309 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aagccgccgccgcgcactcc 383 |||||||||||||||||||| Sbjct: 241 aagccgccgccgcgcactcc 222
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 460 tcctgccgctggcgcacgtcctgggcgg 487 ||||||||||||||||| || ||||||| Sbjct: 93120 tcctgccgctggcgcacctcgtgggcgg 93147
>ref|NM_197632.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0082M15.6), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 306 tacctcatcgtcctctcccgcctcgccttccc 337 |||||| ||||||||||| |||||||||||| Sbjct: 229 tacctcgtcgtcctctccgtcctcgccttccc 260
>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0010H19, complete sequence Length = 162902 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 366 gccgccgccgcgcactccgccgcgtccc 393 |||||||||||||| |||||||| |||| Sbjct: 152818 gccgccgccgcgcattccgccgcatccc 152791
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gccgccgccgcgcactccgccgcg 389 ||||||||||||| |||||||||| Sbjct: 83572 gccgccgccgcgccctccgccgcg 83595
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence Length = 174844 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 366 gccgccgccgcgcactccgccgcgtccc 393 |||||||||||||| |||||||| |||| Sbjct: 86601 gccgccgccgcgcattccgccgcatccc 86574
>ref|NM_146153.3| Mus musculus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>ref|XR_002399.1| PREDICTED: Mus musculus similar to thyroid hormone receptor associated protein 3 (LOC669162), mRNA Length = 3407 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 1881 cctcgccttcccggtcgtca 1862
>gb|BC040346.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:3498255), with apparent retained intron Length = 4283 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2745 cctcgccttcccggtcgtca 2726
>gb|BC048391.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:6314114), complete cds Length = 1715 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 180 cctcgccttcccggtcgtca 161
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 497 cggcgacgacgctgcggtgcgctc 520 ||||||||| |||||||||||||| Sbjct: 1422280 cggcgacgaggctgcggtgcgctc 1422303
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 ggcaccacggtggggctgttcctgccgc 468 |||||| ||||| ||||||||||||||| Sbjct: 258600 ggcaccgcggtgcggctgttcctgccgc 258573
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gccgtcgtcggcgatgctgg 186 |||||||||||||||||||| Sbjct: 49183 gccgtcgtcggcgatgctgg 49202
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 ggcaccacggtggggctgttcctgccgc 468 |||||| ||||| ||||||||||||||| Sbjct: 330285 ggcaccgcggtgcggctgttcctgccgc 330258
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 441 ggcaccacggtggggctgttcctgccgc 468 |||||| ||||| ||||||||||||||| Sbjct: 2604 ggcaccgcggtgcggctgttcctgccgc 2631
>gb|BC092239.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:116673 IMAGE:30659321), complete cds Length = 4266 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2730 cctcgccttcccggtcgtca 2711
>gb|BC033472.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:4947317), with apparent retained intron Length = 1955 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 411 cctcgccttcccggtcgtca 392
>ref|NM_001038053.1| Bos taurus eukaryotic translation initiation factor 2-alpha kinase 1 (EIF2AK1), mRNA Length = 2860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cggcgatgctggggggcgtc 194 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 306 tacctcatcgtcctctcccgcctcgccttccc 337 |||||| ||||||||||| |||||||||||| Sbjct: 138441 tacctcgtcgtcctctccgtcctcgccttccc 138472
>dbj|AK153954.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430012L16 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 2121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 613 cctcgccttcccggtcgtca 594
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 gctgttcctgccgctggcgcacgt 478 ||||||||| |||||||||||||| Sbjct: 3668973 gctgttcctcccgctggcgcacgt 3668996
>dbj|AK169008.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920073L08 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 1764 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 253 cctcgccttcccggtcgtca 234
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 gccgccgccgcgcactccgccgcg 389 ||||||||||||| |||||||||| Sbjct: 62329 gccgccgccgcgccctccgccgcg 62306
>gb|DQ077734.1| Acipenser sturio arylalkylamine N-acetyltransferse 2 (AANAT2) mRNA, partial cds Length = 246 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cagctcgtcgccttcatcat 241 |||||||||||||||||||| Sbjct: 16 cagctcgtcgccttcatcat 35
>dbj|AK046010.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230333E16 product:THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN COMPLEX COMPONENT TRAP150 homolog [Homo sapiens], full insert sequence Length = 2659 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 1147 cctcgccttcccggtcgtca 1128
>gb|BC111252.1| Bos taurus cDNA clone MGC:134528 IMAGE:8066490, complete cds Length = 2860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cggcgatgctggggggcgtc 194 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 306 tacctcatcgtcctctcccgcctcgccttccc 337 |||||| ||||||||||| |||||||||||| Sbjct: 20925950 tacctcgtcgtcctctccgtcctcgccttccc 20925919
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aagccgccgccgcgcactcc 383 |||||||||||||||||||| Sbjct: 8666449 aagccgccgccgcgcactcc 8666430
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 366 gccgccgccgcgcactccgccgcgtccc 393 |||||||||||||| |||||||| |||| Sbjct: 10469785 gccgccgccgcgcattccgccgcatccc 10469758 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gccgccgccgcgcactccgccgcg 389 ||||||||||||| |||||||||| Sbjct: 2805246 gccgccgccgcgccctccgccgcg 2805269
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 aagccgccgccgcgcactcc 383 |||||||||||||||||||| Sbjct: 17106005 aagccgccgccgcgcactcc 17106024
>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence Length = 154316 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 21164 cctcgccttcccggtcgtca 21183
>gb|AY189899.1| Pseudorabies virus strain Ea UL15 (UL15), UL17 (UL17), UL16 (UL16), and UL14 (UL14) genes, complete cds; and UL13 (UL13) gene, partial cds Length = 6671 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 cctcgtcccgctcatcgacctcgc 283 ||||||||||||||||| |||||| Sbjct: 4579 cctcgtcccgctcatcgccctcgc 4556
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgaccaagccgccgccgcgc 378 |||||||||||||||||||| Sbjct: 843283 cgaccaagccgccgccgcgc 843302
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aagccgccgccgcgcactcc 383 |||||||||||||||||||| Sbjct: 96245 aagccgccgccgcgcactcc 96226
>emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chromosome 4, complete sequence Length = 78870 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 67422 cctcgccttcccggtcgtca 67441
>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0483C08 Length = 143855 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 aagccgccgccgcgcactcc 383 |||||||||||||||||||| Sbjct: 87378 aagccgccgccgcgcactcc 87397
>gb|AE005127.1| Halobacterium sp. NRC-1 section 158 of 170 of the complete genome Length = 10420 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 511 cggtgcgctccgcgacg--ccgcacctgttc 539 ||||||||||||||||| |||||||||||| Sbjct: 9439 cggtgcgctccgcgacgaaccgcacctgttc 9469
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 144896 tcccgctcatcgacctcgcc 144877 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tcccgctcatcgacctcgcc 284 |||||||||||||||||||| Sbjct: 84742 tcccgctcatcgacctcgcc 84723
>dbj|AK110059.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D08, full insert sequence Length = 3071 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ggctcgctccgcgtcatcga 217 |||||||||||||||||||| Sbjct: 2696 ggctcgctccgcgtcatcga 2677
>dbj|AK107224.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D06, full insert sequence Length = 1141 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 306 tacctcatcgtcctctcccgcctcgccttccc 337 |||||| ||||||||||| |||||||||||| Sbjct: 362 tacctcgtcgtcctctccgtcctcgccttccc 393
>gb|BC091635.1| Xenopus laevis cDNA clone MGC:98683 IMAGE:7200779, complete cds Length = 4541 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2989 cctcgccttcccggtcgtca 2970
>tpe|BN000505.3| TPA: TPA_inf: Magnaporthe grisea 70-15 syn8 gene for putative polyketide synthase, exons 1-2 Length = 13004 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 ccctctacctcatcgtcctctccc 324 ||||||| |||||||||||||||| Sbjct: 8703 ccctctagctcatcgtcctctccc 8726
>gb|BC088415.1| Rattus norvegicus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:94882 IMAGE:7110766), complete cds Length = 3586 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 306 tacctcatcgtcctctcccgcctcgccttccc 337 |||||| ||||||||||| |||||||||||| Sbjct: 20937214 tacctcgtcgtcctctccgtcctcgccttccc 20937183
>ref|NM_001009693.1| Rattus norvegicus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 3586 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cctcgccttcccggtcgtca 297 |||||||||||||||||||| Sbjct: 171918 cctcgccttcccggtcgtca 171899 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,813,372 Number of Sequences: 3902068 Number of extensions: 3813372 Number of successful extensions: 86906 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84264 Number of HSP's gapped (non-prelim): 2640 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
