Clone Name | bart31c03 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor | 46 | 7e-05 | 2 | UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor | 44 | 3e-04 | 3 | UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... | 41 | 0.003 | 4 | Y1914_BURMA (Q62IG1) UPF0176 protein BMA1914 | 30 | 6.7 | 5 | NTRK1_HUMAN (P04629) High affinity nerve growth factor receptor ... | 29 | 8.7 |
---|
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 46.2 bits (108), Expect = 7e-05 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = +2 Query: 305 VWGLAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFIGLADT 481 V G+ C GDV R C+ C+ A E+A +C + ++Y C++RYS F+ +T Sbjct: 79 VHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLET 137 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +2 Query: 314 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 460 + QC + ++C+ CL A +E+ C +F CL+ + T+N Sbjct: 198 VVQCSPHLDPKNCTTCLKLALQELTQCCGDQLWAFIFTPKCLVSFDTSN 246
>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor| Length = 287 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Frame = +2 Query: 155 SGVDAIGTYCAK---NGTSAET-QASIDQVPAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 322 S D + T+C K N TS T +++ + + L V G+ Sbjct: 24 SDPDDMETFCMKSSRNTTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFL 83 Query: 323 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFIGLADT 481 C GDV R C+ C+ A E+A +C + ++ C++RYS F+ +T Sbjct: 84 CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRYSDKFFLTTLET 136 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/49 (24%), Positives = 24/49 (48%) Frame = +2 Query: 314 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 460 + QC D+ ++C+ CL A +E+ C ++ C++ + T N Sbjct: 197 IVQCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYN 245
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +2 Query: 305 VWGLAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFI 466 V+G+ C GDV C+ C+ A E+ +C + ++Y C++RYS F+ Sbjct: 82 VYGMFLCTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRYSDKFFL 135 Score = 30.4 bits (67), Expect = 3.9 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = +2 Query: 314 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRY 448 L QC + ++C++CL A +E+ C +F C + Y Sbjct: 201 LVQCSPHLNPENCTICLEYALQEIIDCCSDKFWAMIFTPNCFVNY 245
>Y1914_BURMA (Q62IG1) UPF0176 protein BMA1914| Length = 299 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 467 GLADTGYTLILLNTQNATGVDLAAFDRA 550 G D G +++L+T+NA VD+ FDRA Sbjct: 128 GHDDAGRPVVMLDTRNAFEVDVGTFDRA 155
>NTRK1_HUMAN (P04629) High affinity nerve growth factor receptor precursor (EC| 2.7.10.1) (Neurotrophic tyrosine kinase receptor type 1) (TRK1 transforming tyrosine kinase protein) (p140-TrkA) (Trk-A) Length = 796 Score = 29.3 bits (64), Expect = 8.7 Identities = 23/81 (28%), Positives = 31/81 (38%) Frame = +2 Query: 314 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFIGLADTGYTL 493 LA+C +P QD L A KE + S R L F G+ G L Sbjct: 526 LAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 585 Query: 494 ILLNTQNATGVDLAAFDRAQG 556 +++ G DL F R+ G Sbjct: 586 LMVFEYMRHG-DLNRFLRSHG 605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,681,781 Number of Sequences: 219361 Number of extensions: 512170 Number of successful extensions: 1544 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1526 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1544 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)