ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 1148 bits (579), Expect = 0.0 Identities = 582/583 (99%) Strand = Plus / Plus Query: 2 atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60 Query: 62 gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120 Query: 122 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 180 Query: 182 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtccccgcggcg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 181 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcg 240 Query: 242 ctcgtcccgcgcgcctcggcggcgtactacgccacggccaccgccggccgctcctcgtcc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctcgtcccgcgcgcctcggcggcgtactacgccacggccaccgccggccgctcctcgtcc 300 Query: 302 gcggtctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gcggtctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgc 360 Query: 362 ctcgccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctcgccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtc 420 Query: 422 ttctacgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttctacgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacg 480 Query: 482 gggtacacgctcatcctcctcaacacccagaacgccaccggcgtcgacctggccgcgttc 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 gggtacacgctcatcctcctcaacacccagaacgccaccggcgtcgacctggccgcgttc 540 Query: 542 gaccgggcgcaggggaagctcatgtcccgcgtcgcctccgagg 584 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 gaccgggcgcaggggaagctcatgtcccgcgtcgcctccgagg 583
>ref|XM_475074.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 95.6 bits (48), Expect = 2e-16 Identities = 174/216 (80%) Strand = Plus / Plus Query: 306 tctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgcctcg 365 ||||||||||||||||||||||||||||| ||||| | |||||| |||||||| | Sbjct: 242 tctggggcctcgcgcagtgccgcggcgacatcccggcccccgactgcgcgctctgcgcct 301 Query: 366 ccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtcttct 425 |||| || |||| | || |||| | ||||||| ||||| | |||| |||||||| | Sbjct: 302 ccgccgccgccaggcagctcgccggggcctgccgcggcagggccgacgcgcgcgtctggt 361 Query: 426 acgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacggggt 485 ||||||||||| || |||||| | |||| ||||| |||||||| | ||||| || | Sbjct: 362 acgactactgcttcgcgcgctacgacgacgccgacttcgtcggcctcccggacaccggct 421 Query: 486 acacgctcatcctcctcaacacccagaacgccaccg 521 || ||||||||||||||||||| ||||||||||||| Sbjct: 422 acgcgctcatcctcctcaacacgcagaacgccaccg 457 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 248 ccgcgcgcctcggcggcgtactacgccacggccaccgccggccgc 292 ||||||||||| || | ||||||||||||||||||||||||||| Sbjct: 178 ccgcgcgcctccgccggctactacgccacggccaccgccggccgc 222
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 2e-16 Identities = 174/216 (80%) Strand = Plus / Minus Query: 306 tctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgcctcg 365 ||||||||||||||||||||||||||||| ||||| | |||||| |||||||| | Sbjct: 660147 tctggggcctcgcgcagtgccgcggcgacatcccggcccccgactgcgcgctctgcgcct 660088 Query: 366 ccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtcttct 425 |||| || |||| | || |||| | ||||||| ||||| | |||| |||||||| | Sbjct: 660087 ccgccgccgccaggcagctcgccggggcctgccgcggcagggccgacgcgcgcgtctggt 660028 Query: 426 acgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacggggt 485 ||||||||||| || |||||| | |||| ||||| |||||||| | ||||| || | Sbjct: 660027 acgactactgcttcgcgcgctacgacgacgccgacttcgtcggcctcccggacaccggct 659968 Query: 486 acacgctcatcctcctcaacacccagaacgccaccg 521 || ||||||||||||||||||| ||||||||||||| Sbjct: 659967 acgcgctcatcctcctcaacacgcagaacgccaccg 659932 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 248 ccgcgcgcctcggcggcgtactacgccacggccaccgccggccgc 292 ||||||||||| || | ||||||||||||||||||||||||||| Sbjct: 660211 ccgcgcgcctccgccggctactacgccacggccaccgccggccgc 660167 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcg 332 |||||||||||||||||||||| Sbjct: 24085876 ggcctcgcgcagtgccgcggcg 24085897
>dbj|AK108350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B11, full insert sequence Length = 1008 Score = 95.6 bits (48), Expect = 2e-16 Identities = 174/216 (80%) Strand = Plus / Plus Query: 306 tctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgcctcg 365 ||||||||||||||||||||||||||||| ||||| | |||||| |||||||| | Sbjct: 281 tctggggcctcgcgcagtgccgcggcgacatcccggcccccgactgcgcgctctgcgcct 340 Query: 366 ccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtcttct 425 |||| || |||| | || |||| | ||||||| ||||| | |||| |||||||| | Sbjct: 341 ccgccgccgccaggcagctcgccggggcctgccgcggcagggccgacgcgcgcgtctggt 400 Query: 426 acgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacggggt 485 ||||||||||| || |||||| | |||| ||||| |||||||| | ||||| || | Sbjct: 401 acgactactgcttcgcgcgctacgacgacgccgacttcgtcggcctcccggacaccggct 460 Query: 486 acacgctcatcctcctcaacacccagaacgccaccg 521 || ||||||||||||||||||| ||||||||||||| Sbjct: 461 acgcgctcatcctcctcaacacgcagaacgccaccg 496 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 248 ccgcgcgcctcggcggcgtactacgccacggccaccgccggccgc 292 ||||||||||| || | ||||||||||||||||||||||||||| Sbjct: 217 ccgcgcgcctccgccggctactacgccacggccaccgccggccgc 261
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 95.6 bits (48), Expect = 2e-16 Identities = 174/216 (80%) Strand = Plus / Minus Query: 306 tctggggcctcgcgcagtgccgcggcgacgtcccgcgtcaggactgctcgctctgcctcg 365 ||||||||||||||||||||||||||||| ||||| | |||||| |||||||| | Sbjct: 5346 tctggggcctcgcgcagtgccgcggcgacatcccggcccccgactgcgcgctctgcgcct 5287 Query: 366 ccgcggcggccaaggaggtcgcgtcgtcctgccgaggcagctcggacgggcgcgtcttct 425 |||| || |||| | || |||| | ||||||| ||||| | |||| |||||||| | Sbjct: 5286 ccgccgccgccaggcagctcgccggggcctgccgcggcagggccgacgcgcgcgtctggt 5227 Query: 426 acgactactgcctcctccgctactccaccgccaacttcatcggcctcgctgacacggggt 485 ||||||||||| || |||||| | |||| ||||| |||||||| | ||||| || | Sbjct: 5226 acgactactgcttcgcgcgctacgacgacgccgacttcgtcggcctcccggacaccggct 5167 Query: 486 acacgctcatcctcctcaacacccagaacgccaccg 521 || ||||||||||||||||||| ||||||||||||| Sbjct: 5166 acgcgctcatcctcctcaacacgcagaacgccaccg 5131 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 248 ccgcgcgcctcggcggcgtactacgccacggccaccgccggccgc 292 ||||||||||| || | ||||||||||||||||||||||||||| Sbjct: 5410 ccgcgcgcctccgccggctactacgccacggccaccgccggccgc 5366
>ref|XM_479983.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 387 ggcctcgcgcagtgccgcggcgacgtc 413
>ref|XM_479982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 325 ggcctcgcgcagtgccgcggcgacgtc 351
>ref|XM_479981.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 115 ggcctcgcgcagtgccgcggcgacgtc 89
>ref|XM_479980.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1199 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 375 ggcctcgcgcagtgccgcggcgacgtc 401
>ref|XM_479978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 360 ggcctcgcgcagtgccgcggcgacgtc 386
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 11137501 ggcctcgcgcagtgccgcggcgacgtc 11137475 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgctcgtcccgcgcgcctcgg 260 ||||||||||||||||||||| Sbjct: 34781007 cgctcgtcccgcgcgcctcgg 34781027 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gcctcgccgcggcggccaagg 380 ||||||||||||||||||||| Sbjct: 28262992 gcctcgccgcggcggccaagg 28263012 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ctcgcgcagtgccgcggcgacgtc 337 |||||||| ||||||||||||||| Sbjct: 9394584 ctcgcgcaatgccgcggcgacgtc 9394561
>gb|AF311908.1| Oryza sativa 33-kDa secretory protein (m33) gene, complete cds Length = 3389 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 1359 ggcctcgcgcagtgccgcggcgacgtc 1385
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 50858 ggcctcgcgcagtgccgcggcgacgtc 50832
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 2060475 ggcctcgcgcagtgccgcggcgacgtc 2060501 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 2058074 ggcctcgcgcagtgccgcggcgacgtc 2058048 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 2054525 ggcctcgcgcagtgccgcggcgacgtc 2054499 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 2049127 ggcctcgcgcagtgccgcggcgacgtc 2049101 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gccgctcctgctcgccatggcgcg 147 |||||| ||||||||||||||||| Sbjct: 27371603 gccgctgctgctcgccatggcgcg 27371626
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 11134264 ggcctcgcgcagtgccgcggcgacgtc 11134238 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgctcgtcccgcgcgcctcgg 260 ||||||||||||||||||||| Sbjct: 34871079 cgctcgtcccgcgcgcctcgg 34871099 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gcctcgccgcggcggccaagg 380 ||||||||||||||||||||| Sbjct: 28354316 gcctcgccgcggcggccaagg 28354336 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ctcgcgcagtgccgcggcgacgtc 337 |||||||| ||||||||||||||| Sbjct: 9392705 ctcgcgcaatgccgcggcgacgtc 9392682
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 54005 ggcctcgcgcagtgccgcggcgacgtc 54031 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 51604 ggcctcgcgcagtgccgcggcgacgtc 51578 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 48055 ggcctcgcgcagtgccgcggcgacgtc 48029 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 42657 ggcctcgcgcagtgccgcggcgacgtc 42631
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 183272 ggcctcgcgcagtgccgcggcgacgtc 183246 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 179723 ggcctcgcgcagtgccgcggcgacgtc 179697 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 174325 ggcctcgcgcagtgccgcggcgacgtc 174299
>dbj|AK111364.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H09, full insert sequence Length = 988 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 315 ggcctcgcgcagtgccgcggcgacgtc 341
>dbj|AK111343.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F10, full insert sequence Length = 876 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 115 ggcctcgcgcagtgccgcggcgacgtc 89
>dbj|AK107939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A11, full insert sequence Length = 622 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 100 ggcctcgcgcagtgccgcggcgacgtc 74
>dbj|AK073888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I11, full insert sequence Length = 1156 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 325 ggcctcgcgcagtgccgcggcgacgtc 351
>dbj|AK063306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F10, full insert sequence Length = 1164 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 387 ggcctcgcgcagtgccgcggcgacgtc 413
>dbj|AK061187.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-E07, full insert sequence Length = 1199 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 375 ggcctcgcgcagtgccgcggcgacgtc 401
>dbj|AK059618.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G10, full insert sequence Length = 1125 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 360 ggcctcgcgcagtgccgcggcgacgtc 386
>gb|AF097724.1|AF097724 Oryza sativa 33-kDa secretory protein mRNA, complete cds Length = 1179 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 306 ggcctcgcgcagtgccgcggcgacgtc 332
>gb|AF093570.1|AF093570 Oryza sativa 33 kDa secretory protein mRNA, complete cds Length = 1106 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 320 ggcctcgcgcagtgccgcggcgacgtc 346
>gb|AF090872.1|AF090872 Oryza sativa 33 kDa secretory protein mRNA, complete cds Length = 1025 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||||||||||||||||||| Sbjct: 316 ggcctcgcgcagtgccgcggcgacgtc 342
>ref|NM_195716.1| Oryza sativa (japonica cultivar-group) putative serine/threonine kinase (OSJNBa0093I09.22), mRNA Length = 2043 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 301 cgcggtctggggcctcgcgcagtgccgcggcgac 334 |||||||||||||||||||| |||||||||||| Sbjct: 246 cgcggtctggggcctcgcgctctgccgcggcgac 279
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 301 cgcggtctggggcctcgcgcagtgccgcggcgac 334 |||||||||||||||||||| |||||||||||| Sbjct: 18981 cgcggtctggggcctcgcgctctgccgcggcgac 18948
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0093I09, from Chromosome 10, complete sequence Length = 172434 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 301 cgcggtctggggcctcgcgcagtgccgcggcgac 334 |||||||||||||||||||| |||||||||||| Sbjct: 109477 cgcggtctggggcctcgcgctctgccgcggcgac 109444
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 301 cgcggtctggggcctcgcgcagtgccgcggcgac 334 |||||||||||||||||||| |||||||||||| Sbjct: 8628380 cgcggtctggggcctcgcgctctgccgcggcgac 8628347 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ctgcctcctccgctactcca 452 |||||||||||||||||||| Sbjct: 19294281 ctgcctcctccgctactcca 19294262 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggcc 290 |||||||||||||||||||| Sbjct: 2231070 cgccacggccaccgccggcc 2231051
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 301 cgcggtctggggcctcgcgcagtgccgcggcgac 334 |||||||||||||||||||| |||||||||||| Sbjct: 8633479 cgcggtctggggcctcgcgctctgccgcggcgac 8633446 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ctgcctcctccgctactcca 452 |||||||||||||||||||| Sbjct: 19305557 ctgcctcctccgctactcca 19305538 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggcc 290 |||||||||||||||||||| Sbjct: 2231021 cgccacggccaccgccggcc 2231002
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 252 gcgcctcggcggcgtactacgccacggccacc 283 |||| |||||||||||||||||| |||||||| Sbjct: 252296 gcgcatcggcggcgtactacgccgcggccacc 252327
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 328 cggcgacgtcccgcgtcaggact 350 ||||||||||||||||||||||| Sbjct: 1157210 cggcgacgtcccgcgtcaggact 1157232
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 113 ctgctgatggtgccgctcctgctcgcc 139 ||||||||||||||||| ||||||||| Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628
>gb|L14835.1|MZEWUSB Zea mays (clone wusl1032) mRNA sequence Length = 943 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgacgtc 337 ||||||||||| ||||||||||||||| Sbjct: 703 ggcctcgcgcaatgccgcggcgacgtc 677
>ref|XM_475473.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcg 332 |||||||||||||||||||||| Sbjct: 277 ggcctcgcgcagtgccgcggcg 298
>ref|XM_463441.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1662 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggccgc 292 |||||||||||||||||||||| Sbjct: 339 cgccacggccaccgccggccgc 318
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcg 332 |||||||||||||||||||||| Sbjct: 154365 ggcctcgcgcagtgccgcggcg 154386
>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151), mRNA Length = 2463 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841
>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151), mRNA Length = 2212 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590
>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151), mRNA Length = 2766 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991
>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA Length = 2337 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 cgccacggccaccgccggccgc 292 |||||||||||||||||||||| Sbjct: 32014984 cgccacggccaccgccggccgc 32015005
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 cgccacggccaccgccggccgc 292 |||||||||||||||||||||| Sbjct: 56798 cgccacggccaccgccggccgc 56819
>dbj|AK122112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127O09, full insert sequence Length = 2366 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggccgc 292 |||||||||||||||||||||| Sbjct: 676 cgccacggccaccgccggccgc 655
>dbj|AK110420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-A03, full insert sequence Length = 2402 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcg 332 |||||||||||||||||||||| Sbjct: 374 ggcctcgcgcagtgccgcggcg 395
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 gtgctgctgatggtgccgctcctgct 135 |||||||||||||||| ||||||||| Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 47 aacgaagcgcggcacgcaatggcgcc 72 ||||||||||| |||||||||||||| Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 cgccacggccaccgccggccgc 292 |||||||||||||||||||||| Sbjct: 111711 cgccacggccaccgccggccgc 111732
>ref|XM_469484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gcctcgccgcggcggccaagg 380 ||||||||||||||||||||| Sbjct: 1082 gcctcgccgcggcggccaagg 1102
>ref|XM_470327.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4045 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgctcgtcccgcgcgcctcgg 260 ||||||||||||||||||||| Sbjct: 122 cgctcgtcccgcgcgcctcgg 142
>ref|XM_506907.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0096I06.18 patrial mRNA Length = 4167 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgctcgtcccgcgcgcctcgg 260 ||||||||||||||||||||| Sbjct: 122 cgctcgtcccgcgcgcctcgg 142
>ref|XM_478592.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2109 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||| |||||||||||||| Sbjct: 274 ggcctcgcgctgtgccgcggcgacg 298 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 409 ggacgggcgcgtcttctacgactactgcctcctccgctactcca 452 ||||| || ||||||||||||| ||||| ||||||||||||| Sbjct: 372 ggacgtgctcgtcttctacgacctctgccagctccgctactcca 415
>ref|XM_472320.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2706 Score = 42.1 bits (21), Expect = 2.0 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 314 ctcgcgcagtgccgcggcgacgt-cccgcgtcaggactgctcgctctgcctcgccgc 369 |||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| Sbjct: 1606 ctcgcgcagtgccgcgccgacgtgcccgcg-ggggactgctcgcggtgcctcgccgc 1661
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0061D06, complete sequence Length = 172126 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 93423 ctctgcctcgccgcggcggcc 93403
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cgctcgtcccgcgcgcctcgg 260 ||||||||||||||||||||| Sbjct: 81643 cgctcgtcccgcgcgcctcgg 81623
>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14, complete sequence Length = 139855 Score = 42.1 bits (21), Expect = 2.0 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 314 ctcgcgcagtgccgcggcgacgt-cccgcgtcaggactgctcgctctgcctcgccgc 369 |||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| Sbjct: 97190 ctcgcgcagtgccgcgccgacgtgcccgcg-ggggactgctcgcggtgcctcgccgc 97135
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10 Length = 312050 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||||||||| |||||||| Sbjct: 209736 ggcctcgcgcagtgccacggcgacg 209760
>emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence Length = 45319 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 310 gggcctcgcgcagtgccgcggcgac 334 ||||||||||||||||| ||||||| Sbjct: 4700 gggcctcgcgcagtgcctcggcgac 4676
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gcctcgccgcggcggccaagg 380 ||||||||||||||||||||| Sbjct: 114133 gcctcgccgcggcggccaagg 114153
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.0 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 314 ctcgcgcagtgccgcggcgacgt-cccgcgtcaggactgctcgctctgcctcgccgc 369 |||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| Sbjct: 19443628 ctcgcgcagtgccgcgccgacgtgcccgcg-ggggactgctcgcggtgcctcgccgc 19443573
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 9656254 ctctgcctcgccgcggcggcc 9656274
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||| |||||||||||||| Sbjct: 21324823 ggcctcgcgctgtgccgcggcgacg 21324847 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 409 ggacgggcgcgtcttctacgactactgcctcctccgctactcca 452 ||||| || ||||||||||||| ||||| ||||||||||||| Sbjct: 21324921 ggacgtgctcgtcttctacgacctctgccagctccgctactcca 21324964 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gccggccgctcctcgtccgc 303 |||||||||||||||||||| Sbjct: 8397317 gccggccgctcctcgtccgc 8397298
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 cgtcgtctccactgccggcgt 98 ||||||||||||||||||||| Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccacggccaccgccggccgc 292 |||||||||||||||||||| Sbjct: 22954512 ccacggccaccgccggccgc 22954531
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 cgtcgtctccactgccggcgt 98 ||||||||||||||||||||| Sbjct: 101881 cgtcgtctccactgccggcgt 101861
>dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1008_E09 Length = 101964 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||| |||||||||||||| Sbjct: 44991 ggcctcgcgctgtgccgcggcgacg 45015 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 409 ggacgggcgcgtcttctacgactactgcctcctccgctactcca 452 ||||| || ||||||||||||| ||||| ||||||||||||| Sbjct: 45089 ggacgtgctcgtcttctacgacctctgccagctccgctactcca 45132
>dbj|AP005786.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0458H05 Length = 136299 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||| |||||||||||||| Sbjct: 111108 ggcctcgcgctgtgccgcggcgacg 111132 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 409 ggacgggcgcgtcttctacgactactgcctcctccgctactcca 452 ||||| || ||||||||||||| ||||| ||||||||||||| Sbjct: 111206 ggacgtgctcgtcttctacgacctctgccagctccgctactcca 111249
>dbj|AK111650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130K01, full insert sequence Length = 2340 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggcctcgcgcagtgccgcggcgacg 335 |||||||||| |||||||||||||| Sbjct: 315 ggcctcgcgctgtgccgcggcgacg 339 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 409 ggacgggcgcgtcttctacgactactgcctcctccgctactcca 452 ||||| || ||||||||||||| ||||| ||||||||||||| Sbjct: 413 ggacgtgctcgtcttctacgacctctgccagctccgctactcca 456
>dbj|AK104507.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G07, full insert sequence Length = 938 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 43 ctctgcctcgccgcggcggcc 63
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 ccgcggcgctcgtcccgcgcgcctc 258 ||||||||||||| ||||||||||| Sbjct: 1389771 ccgcggcgctcgttccgcgcgcctc 1389747
>dbj|AK067288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100O03, full insert sequence Length = 896 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 58 ctctgcctcgccgcggcggcc 78
>dbj|AK066677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071C10, full insert sequence Length = 954 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 47 ctctgcctcgccgcggcggcc 67
>dbj|AK063396.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H09, full insert sequence Length = 1450 Score = 42.1 bits (21), Expect = 2.0 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 314 ctcgcgcagtgccgcggcgacgt-cccgcgtcaggactgctcgctctgcctcgccgc 369 |||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| Sbjct: 261 ctcgcgcagtgccgcgccgacgtgcccgcg-ggggactgctcgcggtgcctcgccgc 316
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctctgcctcgccgcggcggcc 376 ||||||||||||||||||||| Sbjct: 9727951 ctctgcctcgccgcggcggcc 9727971
>ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 gccgctcctgctcgccatggcgcg 147 |||||| ||||||||||||||||| Sbjct: 95 gccgctgctgctcgccatggcgcg 72
>ref|NM_194771.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase 4 (OSJNBa0087H07.8), mRNA Length = 1923 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgccacggccaccgccggcc 290 |||||||||||||||||||| Sbjct: 171 cgccacggccaccgccggcc 190
>ref|XM_467010.1| Oryza sativa (japonica cultivar-group), mRNA Length = 894 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gcgcagtgccgcggcgacgtcccg 340 |||||||||| ||||||||||||| Sbjct: 583 gcgcagtgcctcggcgacgtcccg 606
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgctgctcgtgctgctgat 120 |||||||||||||||||||| Sbjct: 167055 ccgctgctcgtgctgctgat 167036
>ref|XM_363077.1| Magnaporthe grisea 70-15 hypothetical protein (MG08661.4) partial cds Length = 1359 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gtcccgcgtcgcctccgagg 584 |||||||||||||||||||| Sbjct: 297 gtcccgcgtcgcctccgagg 316
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 ggcctcgcgcagtgccgcggcgac 334 ||||||||||| |||||||||||| Sbjct: 4670458 ggcctcgcgcattgccgcggcgac 4670435
>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13, member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (hNaDC3) (LOC485910), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 103 gctgctcgtgctgctgatggtgccgctc 130 |||||||||||||||| ||| ||||||| Sbjct: 48 gctgctcgtgctgctgttggcgccgctc 75
>ref|XM_794004.1| PREDICTED: Strongylocentrotus purpuratus similar to PHD zinc finger transcription factor (LOC594568), mRNA Length = 2937 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 actgcctcctccgctactcc 451 |||||||||||||||||||| Sbjct: 801 actgcctcctccgctactcc 820
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggcc 290 |||||||||||||||||||| Sbjct: 2231070 cgccacggccaccgccggcc 2231051
>gb|AF538869.1| Bifidobacterium longum plasmid pDOJH10S, complete sequence Length = 3661 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 gcctcgccgcggcggccaaggagg 383 |||||||||| ||||||||||||| Sbjct: 1422 gcctcgccgcagcggccaaggagg 1399
>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence Length = 191739 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 catgcatgcaaacaaatcac 20 |||||||||||||||||||| Sbjct: 11896 catgcatgcaaacaaatcac 11877
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tcgccgcggcggccaaggag 382 |||||||||||||||||||| Sbjct: 1995749 tcgccgcggcggccaaggag 1995730
>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 12446 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgcatgcaaacaaatcacta 22 |||||||||||||||||||| Sbjct: 1760 tgcatgcaaacaaatcacta 1779
>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169964 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgcatgcaaacaaatcacta 22 |||||||||||||||||||| Sbjct: 169725 tgcatgcaaacaaatcacta 169744
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ctgcctcctccgctactcca 452 |||||||||||||||||||| Sbjct: 82100 ctgcctcctccgctactcca 82119
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence Length = 156654 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgccacggccaccgccggcc 290 |||||||||||||||||||| Sbjct: 56724 cgccacggccaccgccggcc 56705
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ctcgcgcagtgccgcggcgacgtc 337 |||||||| ||||||||||||||| Sbjct: 91984 ctcgcgcaatgccgcggcgacgtc 91961
>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene, complete sequence; and unknown genes Length = 7718 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gtgctgctgatggtgccgct 129 |||||||||||||||||||| Sbjct: 5917 gtgctgctgatggtgccgct 5936
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cgcgcagtgccgcggcgacg 335 |||||||||||||||||||| Sbjct: 4111021 cgcgcagtgccgcggcgacg 4111040 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 500 ctcaacacccagaacgccaccggcgtcg 527 ||||||||||||| ||| |||||||||| Sbjct: 502313 ctcaacacccagatcgcgaccggcgtcg 502286
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25753867 ctacgacgcctgcctcctccgctactcc 25753840 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25745887 ctacgacgcctgcctcctccgctactcc 25745860 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25733732 ctacgacgcctgcctcctccgctactcc 25733759 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25690289 ctacgacgcctgcctcctccgctactcc 25690316
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gcgcagtgccgcggcgacgtcccg 340 |||||||||| ||||||||||||| Sbjct: 25904127 gcgcagtgcctcggcgacgtcccg 25904150
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gccggccgctcctcgtccgc 303 |||||||||||||||||||| Sbjct: 102415 gccggccgctcctcgtccgc 102396
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccacggccaccgccggccgc 292 |||||||||||||||||||| Sbjct: 129334 ccacggccaccgccggccgc 129353
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccacggccaccgccggccgc 292 |||||||||||||||||||| Sbjct: 20997 ccacggccaccgccggccgc 21016
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 532 ggccgcgttcgaccgggcgcaggg 555 ||||||| |||||||||||||||| Sbjct: 6603363 ggccgcgatcgaccgggcgcaggg 6603386
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gccaacttcatcggcctcgc 474 |||||||||||||||||||| Sbjct: 30376 gccaacttcatcggcctcgc 30395
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 acccagaacgccaccggcgtcgac 529 ||||||||||||| |||||||||| Sbjct: 4265183 acccagaacgccaacggcgtcgac 4265160
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 cgtctccactgccggcgtctccgctgct 108 |||| |||| |||||||||||||||||| Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gcgcagtgccgcggcgacgtcccg 340 |||||||||| ||||||||||||| Sbjct: 55468 gcgcagtgcctcggcgacgtcccg 55491
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gccgctcctgctcgccatggcgcg 147 |||||| ||||||||||||||||| Sbjct: 73130 gccgctgctgctcgccatggcgcg 73153
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gccggccgctcctcgtccgc 303 |||||||||||||||||||| Sbjct: 28910 gccggccgctcctcgtccgc 28891
>dbj|AK110310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-B04, full insert sequence Length = 2771 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 392 ctacgacgcctgcctcctccgctactcc 419
>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence Length = 118313 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gtgctgctgatggtgccgct 129 |||||||||||||||||||| Sbjct: 94972 gtgctgctgatggtgccgct 94991
>dbj|AK107367.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A12, full insert sequence Length = 2205 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 413 ctacgacgcctgcctcctccgctactcc 440
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 tcgcgcagtgccgcggcgacgtcc 338 ||||||||| |||||||||||||| Sbjct: 78807 tcgcgcagttccgcggcgacgtcc 78830
>dbj|AK061425.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G05, full insert sequence Length = 1133 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ctcgcgcagtgccgcggcgacgtc 337 |||||||| ||||||||||||||| Sbjct: 327 ctcgcgcaatgccgcggcgacgtc 350
>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full insert sequence Length = 1327 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 gccgctcctgctcgccatggcgcg 147 |||||| ||||||||||||||||| Sbjct: 95 gccgctgctgctcgccatggcgcg 72
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 tcgcgcagtgccgcggcgacgtcc 338 ||||||||| |||||||||||||| Sbjct: 78807 tcgcgcagttccgcggcgacgtcc 78830
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ctgccggcgtctccgctgct 108 |||||||||||||||||||| Sbjct: 21719 ctgccggcgtctccgctgct 21738
>emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chromosome 17, complete sequence Length = 173998 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 catgcatgcaaacaaatcac 20 |||||||||||||||||||| Sbjct: 88377 catgcatgcaaacaaatcac 88358
>gb|DQ123820.1| Shuttle vector pDOJHR, complete sequence Length = 8596 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 gcctcgccgcggcggccaaggagg 383 |||||||||| ||||||||||||| Sbjct: 6357 gcctcgccgcagcggccaaggagg 6334
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 cgccgcggcggccaaggagg 383 |||||||||||||||||||| Sbjct: 1645580 cgccgcggcggccaaggagg 1645561
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25682043 ctacgacgcctgcctcctccgctactcc 25682016 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25674063 ctacgacgcctgcctcctccgctactcc 25674036 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25661908 ctacgacgcctgcctcctccgctactcc 25661935 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 25618465 ctacgacgcctgcctcctccgctactcc 25618492
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 121105 ctacgacgcctgcctcctccgctactcc 121078 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 113125 ctacgacgcctgcctcctccgctactcc 113098 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 100970 ctacgacgcctgcctcctccgctactcc 100997 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ctacgactactgcctcctccgctactcc 451 ||||||| ||||||||||||||||||| Sbjct: 57527 ctacgacgcctgcctcctccgctactcc 57554
>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940126D9, complete sequence Length = 125236 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 actacgccacggccaccgcc 286 |||||||||||||||||||| Sbjct: 73171 actacgccacggccaccgcc 73152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,335,342 Number of Sequences: 3902068 Number of extensions: 3335342 Number of successful extensions: 76718 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 72561 Number of HSP's gapped (non-prelim): 4153 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
