ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31b11 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 75.9 bits (185), Expect(2) = 9e-17 Identities = 36/84 (42%), Positives = 52/84 (61%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ V + +WG TI ++ V D +G +DVVLG L EY+ YFG + GRVA Sbjct: 22 FQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQKHPYFGAVVGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+G F LDGK Y +N+G N+ Sbjct: 82 RIAKGTFTLDGKEYKLAINNGPNS 105 Score = 30.0 bits (66), Expect(2) = 9e-17 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 437 IHGGKRGFSKVIWTVKEYAAG 499 +HGG RGF KV+WT + + G Sbjct: 106 LHGGVRGFDKVLWTPRVLSNG 126
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 76.6 bits (187), Expect(2) = 1e-16 Identities = 36/84 (42%), Positives = 52/84 (61%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ V + +WG TI ++ V D +G +DVVLG D L Y+ YFG + GRVA Sbjct: 22 FQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFGAVVGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+G F LDGK Y +N+G N+ Sbjct: 82 RIAKGTFTLDGKEYKLAINNGPNS 105 Score = 28.9 bits (63), Expect(2) = 1e-16 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 437 IHGGKRGFSKVIWTVKEYAAG 499 +HGG +GF KV+WT + + G Sbjct: 106 LHGGVKGFDKVLWTPRVLSNG 126
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 69.7 bits (169), Expect(2) = 6e-15 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ V + +WG TI ++ V D +G +DVVLG L Y+ YFG + GRVA Sbjct: 22 FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+G F +DGK YH +N N+ Sbjct: 82 RIAKGTFKVDGKEYHLAINKEPNS 105 Score = 30.0 bits (66), Expect(2) = 6e-15 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 437 IHGGKRGFSKVIWTVKEYAAG 499 +HGG RGF KV+WT + + G Sbjct: 106 LHGGVRGFDKVLWTPRVLSNG 126
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 69.3 bits (168), Expect(2) = 7e-15 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ V + +WG TI ++ V D +G +DVVLG L Y+ YFG + GRVA Sbjct: 22 FQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQKQPYFGAVIGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+G F +DGK YH +N N+ Sbjct: 82 RIAKGTFKVDGKEYHLAINKEPNS 105 Score = 30.0 bits (66), Expect(2) = 7e-15 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 437 IHGGKRGFSKVIWTVKEYAAG 499 +HGG RGF KV+WT + + G Sbjct: 106 LHGGVRGFDKVLWTPRVLSNG 126
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 75.1 bits (183), Expect = 1e-13 Identities = 35/84 (41%), Positives = 52/84 (61%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ +V + +WG TI ++ V D +G +DVVLG L Y+ YFG + GRVA Sbjct: 22 FQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+GRF +DGK YH +N N+ Sbjct: 82 RIAKGRFTVDGKEYHLPINREPNS 105 Score = 30.8 bits (68), Expect = 2.6 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +2 Query: 410 YLPQRRQER-IHGGKRGFSKVIWTVKEYAAG 499 +LP R+ +HGG RGF KV+WT + + G Sbjct: 96 HLPINREPNSLHGGFRGFDKVLWTPQVLSNG 126
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 73.6 bits (179), Expect = 3e-13 Identities = 35/84 (41%), Positives = 51/84 (60%) Frame = +3 Query: 186 YELKRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQ 365 ++L+ SV + +WG TI ++ V D +G +DVVLG L Y+ YFG + GRVA Sbjct: 22 FQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVAN 81 Query: 366 RMARGRFVLDGKVYHTYLNDGKNA 437 R+A+GRF + GK YH +N N+ Sbjct: 82 RIAKGRFTIGGKEYHLPVNREPNS 105
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 60.5 bits (145), Expect(2) = 4e-11 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 4/80 (5%) Frame = +3 Query: 210 SVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEY-VNDTS---YFGPLNGRVAQRMAR 377 SV ++G I IL PD++G ++VLG D L Y V DT +FG L GR A R+ Sbjct: 49 SVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGN 108 Query: 378 GRFVLDGKVYHTYLNDGKNA 437 +F LDGK Y+ N+G N+ Sbjct: 109 AKFSLDGKTYNLEKNNGPNS 128 Score = 26.2 bits (56), Expect(2) = 4e-11 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +2 Query: 437 IHGGKRGFSKVIWTVKEYAAGGDS 508 +H G GF K +W VK + G++ Sbjct: 129 LHSGNPGFDKRVWQVKPLVSKGET 152
>GAL10_YEAST (P04397) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 699 Score = 47.4 bits (111), Expect = 3e-05 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +3 Query: 207 FSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVN-DTSYFGPLNGRVAQRMARGR 383 F N GA+I+ D K N VVLG + Y+N D++Y G GR A R+++G+ Sbjct: 384 FQATFANLGASIV-----DLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGK 438 Query: 384 FVLDGKVYHTYLNDGKNA 437 F L K Y +N+G NA Sbjct: 439 FSLCNKDYQLTVNNGVNA 456
>GAL10_PACTA (P40801) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 689 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +3 Query: 201 GDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVN-DTSYFGPLNGRVAQRMAR 377 G F V ++N GATI++ + K NL G D L Y+ D +FG GRVA R+++ Sbjct: 372 GKFEVSISNHGATIVAAKLNGIKLNL-----GFDNLKGYLREDNPFFGATIGRVANRISK 426 Query: 378 GRFVLDGKVYHTYLND 425 G +++G Y LN+ Sbjct: 427 GDLLINGTHYQVGLNE 442
>GALM_LACHE (Q00053) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase) (Fragment)| Length = 129 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/74 (29%), Positives = 45/74 (60%) Frame = +3 Query: 213 VKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQRMARGRFVL 392 VK+ N+GAT+ +L+ D +++L +++ A+Y + +Y G GR+A R+ +G++ Sbjct: 29 VKVLNYGATLEKVLLNDE-----NMILSLNSPADYSQERNYLGGTVGRIAGRVRKGQWRH 83 Query: 393 DGKVYHTYLNDGKN 434 + + +NDG+N Sbjct: 84 GLETHQLPINDGEN 97
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 195 KRGDFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTS-YFGPLNGRVAQRM 371 K F VK+ N GATI+ I+V N VV +D EY + ++ +FG G A R+ Sbjct: 369 KGTSFEVKLANLGATIVDIVV-----NGCSVVASLDNETEYKDQSNPFFGATVGPYANRI 423 Query: 372 ARGRFVLDGK 401 A G F ++GK Sbjct: 424 ANGTFEINGK 433
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 42.7 bits (99), Expect = 7e-04 Identities = 27/74 (36%), Positives = 40/74 (54%) Frame = +3 Query: 213 VKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQRMARGRFVL 392 V+ +WGAT +S VP + L +V+LG + Y SY G GR A R+A +F L Sbjct: 28 VQFMDWGATWLSCKVPVND-TLREVLLGCK-VDNYPTHQSYLGASVGRYANRIANAQFEL 85 Query: 393 DGKVYHTYLNDGKN 434 +G++ N GK+ Sbjct: 86 NGELIKLSSNQGKH 99
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 40.4 bits (93), Expect = 0.003 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Frame = +3 Query: 204 DFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEY-VNDTSYFGPLNGRVAQRMARG 380 D V + N+GA + ++ KG ++V G + + Y + + +FG GR A R+A G Sbjct: 377 DLEVSIANYGALVQAVRY---KGR--NLVNGFNDFSRYKLKENPFFGATIGRFANRIANG 431 Query: 381 RFVLDGKVY--------HTYLNDGKNAF 440 +F +DG +Y T L+ G N F Sbjct: 432 QFEVDGHLYTLCKNENNKTTLHGGNNGF 459
>GALM_STRTR (P21955) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 348 Score = 37.4 bits (85), Expect = 0.027 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +3 Query: 231 GATIMSILVPDSKGNLADVVLGMDTLAEYVNDTSYFGPLNGRVAQRMARGRFVLDGKVYH 410 GAT+ LVP G L ++VLG +Y + GRVA R+ + + + +Y Sbjct: 35 GATLQEFLVPMETGALKNIVLGFSDFEDYYKNNLCACQSIGRVAGRIGKASYTHNMVLYS 94 Query: 411 TYLNDGKN 434 N+G N Sbjct: 95 LPKNEGDN 102
>NRG3_MOUSE (O35181) Pro-neuregulin-3, membrane-bound isoform precursor| (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)] Length = 713 Score = 30.8 bits (68), Expect = 2.6 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 15/116 (12%) Frame = +1 Query: 139 PLRWPA--APTRGRWSACTSSREAISPSR*PTGAP-------------PSCPSSSLIPKG 273 P R+P P R + T+ A P+ T AP P PS+ +P Sbjct: 165 PTRFPGHRVPIRASPRSTTARNTAAPPTVLSTTAPFFSSSTPGSRPPMPGAPSTQAMPS- 223 Query: 274 IWPMLCWAWTPSLNMLMTPLTLXXXXXXXXXXXXXAASSSTAKYTIPTSTTARTHS 441 WP +A + L+ TL +S+S+ T TST+ + H+ Sbjct: 224 -WPTAAYATSSYLHDSTPSWTLSPFQDAAAASSSSPSSTSSTTTTPETSTSPKFHT 278
>Y4160_CLOAB (P33747) Hypothetical protein CAP0160 precursor| Length = 967 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 204 DFSVKMTNWGATIMSILVPDSKGNLADVVLGMDTLAEYVND 326 D +VK W + S++ D KGN+ + LGM + VND Sbjct: 149 DSAVKDVTWTTSDPSVVSVDDKGNIKALKLGMAVVTAAVND 189
>SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 211 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = +2 Query: 344 AEWEGGAEDGQGPLRPRRQSIPYLPQ--RRQERIHGGKRGFSKVIWTVKEYAAGG 502 A EG D + P+ + IP LP R HGG ++WTV + GG Sbjct: 41 AALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLLWTVMSPSGGG 95
>DGTL1_RHIME (Q92Q32) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 405 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -1 Query: 311 SEGVHAQHNIGQIPFGIRDEDG-HDGGAPVGHLDGEIASLELV 186 +EGV H+ G PFG ED H+ P G D SL +V Sbjct: 100 AEGVALVHDFGHTPFGHTGEDALHEVLEPYGGFDHNAQSLRIV 142
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Frame = +1 Query: 130 ASRPLRWPAAPTRGRWSACTSSREAISPSR*PTGAPPSCP--------SSSLIPKGIWPM 285 ++ P P APT TS +SP T +PP P SS+ P + Sbjct: 4249 STAPPSTPTAPTT------TSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTVQTT 4302 Query: 286 LCWAWTPSLNMLMTP 330 AWTP+ L TP Sbjct: 4303 TTSAWTPTPTPLSTP 4317
>MDM10_YEAST (P18409) Mitochondrial inheritance component MDM10| Length = 493 Score = 29.6 bits (65), Expect = 5.7 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -2 Query: 409 WYTLPSRTKRPLAILCATLPFSGPK*EVSLTYSARVSMPSTTSAKF 272 +YT + T RPL + + P G +S TYSA+ ST AK+ Sbjct: 254 YYTHSTNTGRPLTLTLSWNPLFG---HISSTYSAKTGTNSTFCAKY 296
>EHD2_HUMAN (Q9NZN4) EH-domain-containing protein 2| Length = 543 Score = 29.6 bits (65), Expect = 5.7 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = -2 Query: 532 AVVHGDVRGVAAGGVLLHRPYHLAEPPFATMNAFLPSL--R*VWYTLPSRTKRPLAILCA 359 AV+HGD G G L+ P + PF +N F + R + LP++ ++I+ Sbjct: 99 AVMHGDTEGTVPGNALVVDP----DKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDT 154 Query: 358 TLPFSGPK*EVSLTY 314 SG K VS Y Sbjct: 155 PGILSGAKQRVSRGY 169
>PTV3B_BACHD (Q9KF90) PTS system beta-glucoside-specific EIIBCA component| (EIIBCA-Bgl) (EII-Bgl) [Includes: Beta-glucoside-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system beta-glucoside-specific EIIB component); Beta-glucoside p Length = 636 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -2 Query: 325 SLTYSARVSMPSTTSAKFPLESGTRMDM---MVAPQLVILTEKSPLLSSYTPTIF 170 SL Y + + T + KF M + +V P LV+LTE PL + +T TIF Sbjct: 153 SLFYFFPIFLGYTAAKKFGATPFIGMAIGASLVYPTLVVLTEGEPLYTLFTGTIF 207
>KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)| Length = 1096 Score = 29.3 bits (64), Expect = 7.5 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Frame = -2 Query: 406 YTLPSRTKRPLAILCATLPFSGPK*EVSLTYSARVSMPSTTSAKFPLESGTRMDMMVAPQ 227 Y P R A+ AT + P+ S T +AR MP TS+ + + T M +PQ Sbjct: 638 YGAPQRQPSAEAVSAATNSYMPPQ---SPTAAARQQMPPRTSSSAAVAAATVATGMPSPQ 694 Query: 226 LVILTEKSPL---LSSYTPTIF 170 + + P+ L +Y P + Sbjct: 695 QMPAEQNRPMQPQLPTYDPKAY 716
>CU002_HUMAN (O43822) Protein C21orf2 (C21orf-HUMF09G8.5) (YF5/A2)| Length = 256 Score = 29.3 bits (64), Expect = 7.5 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 11/81 (13%) Frame = +2 Query: 293 GHGHPR*IC**HLLLWAAEW-----------EGGAEDGQGPLRPRRQSIPYLPQRRQERI 439 GHG P+ C L AAE GA+D +G P R P L R Sbjct: 151 GHGGPKLCCTLSSLSSAAETGRDPLDSEEEATSGAQDERGLKPPSRGQFPSLSARDASSS 210 Query: 440 HGGKRGFSKVIWTVKEYAAGG 502 H G+ + ++ ++E A G Sbjct: 211 HRGRNVLTAILLLLRELDAEG 231
>DGTL1_AGRT5 (Q8UEP3) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 405 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = -1 Query: 311 SEGVHAQHNIGQIPFGIRDEDGHDGG-APVGHLDGEIASLELV 186 +EGV H+ G PFG ED D P G D SL +V Sbjct: 100 AEGVALVHDFGHTPFGHTGEDALDAVLLPYGGFDHNAQSLRIV 142
>Y1022_METTH (O27101) Putative biopolymer transport protein exbB homolog| Length = 279 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 189 ELKRGDFSVKMTNWGATIMSILVPDSKGNLADVV 290 E+ + + KMTNWG +M I V +GN+ DVV Sbjct: 193 EIDKIELIKKMTNWGYAVMRISV---EGNVDDVV 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,182,420 Number of Sequences: 219361 Number of extensions: 1561209 Number of successful extensions: 5221 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5217 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
