ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart31b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK059962.1| Oryza sativa (japonica cultivar-group) cDNA clon... 398 e-108
2dbj|AK072746.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
3dbj|AK104463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
4ref|NM_191661.1| Oryza sativa (japonica cultivar-group), predic... 383 e-103
5gb|AY104165.1| Zea mays PCO134015 mRNA sequence 369 6e-99
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
7dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
8dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
9ref|NM_193508.1| Oryza sativa (japonica cultivar-group), predic... 127 4e-26
10dbj|AK102003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
11dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
12gb|AY105301.1| Zea mays PCO100019 mRNA sequence 115 2e-22
13dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 46 0.12
14gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 46 0.12
15gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.9
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18dbj|AK073702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
19ref|NM_120279.2| Arabidopsis thaliana unknown protein AT5G02010 ... 40 7.5
20gb|BT020213.1| Arabidopsis thaliana At5g02010 mRNA, complete cds 40 7.5
21gb|BT015831.1| Arabidopsis thaliana At5g02010 gene, complete cds 40 7.5
22gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, R... 40 7.5
23ref|XM_790248.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
24emb|AL603745.16| Mouse DNA sequence from clone RP23-392I13 on ch... 40 7.5
25emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.5
26gb|AY061650.1| Toxoplasma gondii Snf2-related chromatin remodeli... 40 7.5
27gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.5
28emb|BX831766.1|CNS09ZO8 Arabidopsis thaliana Full-length cDNA Co... 40 7.5
29emb|BX832677.1|CNS09YP4 Arabidopsis thaliana Full-length cDNA Co... 40 7.5
30gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosom... 40 7.5
31gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 fro... 40 7.5
32dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.5
33emb|BX088552.1|CNS09S4T Mus musculus chromosome 11 region in the... 40 7.5
34emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the... 40 7.5

>dbj|AK059962.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F05, full
           insert sequence
          Length = 1086

 Score =  398 bits (201), Expect = e-108
 Identities = 324/365 (88%)
 Strand = Plus / Plus

                                                                       
Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
           ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 204 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 263

                                                                       
Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297
           |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| ||
Sbjct: 264 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 323

                                                                       
Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357
           | |||||||| |||||||||||| |||| ||||| ||||||||||||| |||||||||||
Sbjct: 324 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctgg 383

                                                                       
Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417
           |||||||||   | |  |||||||||||||| |||||||| || |||||| |||||||||
Sbjct: 384 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 443

                                                                       
Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477
           |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 444 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 503

                                                                       
Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactg 537
           |  ||||  ||||||||||||||||||| ||| |||||||||| |||||||  || ||||
Sbjct: 504 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactg 563

                
Query: 538 atcag 542
           |||||
Sbjct: 564 atcag 568



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>dbj|AK072746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135J09, full
           insert sequence
          Length = 2300

 Score =  396 bits (200), Expect = e-107
 Identities = 314/352 (89%)
 Strand = Plus / Plus

                                                                       
Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
           ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 203 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 262

                                                                       
Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297
           |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| ||
Sbjct: 263 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 322

                                                                       
Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357
           | |||||||| |||||||||||| |||| ||||| ||||||||||||| |||||||||||
Sbjct: 323 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctgg 382

                                                                       
Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417
           |||||||||   | |  |||||||||||||| |||||||| || |||||| |||||||||
Sbjct: 383 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 442

                                                                       
Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477
           |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 443 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 502

                                                               
Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggt 529
           |  ||||  ||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 503 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggt 554



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>dbj|AK104463.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C03, full
           insert sequence
          Length = 1092

 Score =  391 bits (197), Expect = e-105
 Identities = 323/365 (88%)
 Strand = Plus / Plus

                                                                       
Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
           ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 204 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 263

                                                                       
Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297
           |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| ||
Sbjct: 264 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 323

                                                                       
Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357
           | |||||||| |||||||||||| |||| ||||| ||||||||||| | |||||||||||
Sbjct: 324 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcgaaagatggacctgg 383

                                                                       
Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417
           |||||||||   | |  |||||||||||||| |||||||| || |||||| |||||||||
Sbjct: 384 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 443

                                                                       
Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477
           |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 444 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 503

                                                                       
Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactg 537
           |  ||||  ||||||||||||||||||| ||| |||||||||| |||||||  || ||||
Sbjct: 504 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactg 563

                
Query: 538 atcag 542
           |||||
Sbjct: 564 atcag 568



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>ref|NM_191661.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  383 bits (193), Expect = e-103
 Identities = 316/357 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcc 245
           ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |
Sbjct: 1   atgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcctccctcttc 60

                                                                       
Query: 246 cgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggctctccgag 305
           |||||||||||| | |||||||| |||||||||||||| |||||||||| ||| ||||||
Sbjct: 61  cgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagctgtccgag 120

                                                                       
Query: 306 atccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctggaggcgagg 365
           || |||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 121 attcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctggaggcgagg 180

                                                                       
Query: 366 aatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtacaaatccgac 425
           |   | |  |||||||||||||| |||||||| || |||||| ||||||||||||| |||
Sbjct: 181 agcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtacaaatctgac 240

                                                                       
Query: 426 cttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggcaaactacg 485
           || ||||| |||||||| ||||| ||||||||||||||||||||||| |||||  |||| 
Sbjct: 241 ctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggcaggctaca 300

                                                                    
Query: 486 agggaggagctccttgagtctggcatggctgacacactcgcggtttccactgatcag 542
            ||||||||||||||||||| ||| |||||||||| |||||||  || |||||||||
Sbjct: 301 cgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactgatcag 357



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>gb|AY104165.1| Zea mays PCO134015 mRNA sequence
          Length = 1189

 Score =  369 bits (186), Expect = 6e-99
 Identities = 318/362 (87%)
 Strand = Plus / Plus

                                                                       
Query: 181 cagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| |
Sbjct: 266 cagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggcctccgcctcgc 325

                                                                       
Query: 241 tctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggctct 300
           |||||||||||||||| || || ||||| ||||||||||||| ||||||||||| |||||
Sbjct: 326 tctcccgcaagtgcacggctgcatccgccctcgatggagagaggaagaagcagaagctct 385

                                                                       
Query: 301 ccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctggagg 360
           |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||
Sbjct: 386 ccgagatccagtccggcgttgaggaagctgaatcgctgattcggaagatggacctggagg 445

                                                                       
Query: 361 cgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtacaaat 420
           | ||||   | | ||| ||| | ||||| |||||||| || |||||| ||||||| ||||
Sbjct: 446 caaggagcctacagcctagcattaaggctggtttgcttgcaaagctgagggagtataaat 505

                                                                       
Query: 421 ccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggcaaa 480
           | ||||| |||||| ||||||| |||||||||||||| || ||||||||||| |||||  
Sbjct: 506 ctgacctcaacaacgtcaagagtgagctcaagaggatatctgcgcccaatgctaggcagg 565

                                                                       
Query: 481 ctacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactgatc 540
           ||||  ||||||||||||| |||||||| |||||||| || |||||||| || |||||||
Sbjct: 566 ctacccgggaggagctcctggagtctggaatggctgatactctcgcggtgtctactgatc 625

             
Query: 541 ag 542
           ||
Sbjct: 626 ag 627



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Plus

                                                                            
Query: 338      gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397
                |||||||| ||||||||||||||||||||   | |  |||||||||||||| ||||||||
Sbjct: 29358558 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 29358617

                                                                            
Query: 398      agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457
                 || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 29358618 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 29358677

                                                                            
Query: 458      ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517
                ||||||||||||||| |||||  ||||  ||||||||||||||||||| ||| |||||||
Sbjct: 29358678 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 29358737

                            
Query: 518      cacactcgcggt 529
                ||| ||||||||
Sbjct: 29358738 cactctcgcggt 29358749



 Score =  147 bits (74), Expect = 4e-32
 Identities = 95/102 (93%)
 Strand = Plus / Plus

                                                                            
Query: 178      gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
                ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 29358053 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 29358112

                                                          
Query: 238      ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279
                |||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 29358113 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 29358154



 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 195      gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254
                |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||
Sbjct: 21271844 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 21271903

                                  
Query: 255      accgcggcctccgctctc 272
                ||||| ||||||||||||
Sbjct: 21271904 accgctgcctccgctctc 21271921



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 278      agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337
                |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| |||||
Sbjct: 29358263 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 29358322

                 
Query: 338      g 338
                |
Sbjct: 29358323 g 29358323



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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0692C11
          Length = 169562

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Plus

                                                                          
Query: 338    gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397
              |||||||| ||||||||||||||||||||   | |  |||||||||||||| ||||||||
Sbjct: 137421 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 137480

                                                                          
Query: 398    agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457
               || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 137481 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 137540

                                                                          
Query: 458    ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517
              ||||||||||||||| |||||  ||||  ||||||||||||||||||| ||| |||||||
Sbjct: 137541 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 137600

                          
Query: 518    cacactcgcggt 529
              ||| ||||||||
Sbjct: 137601 cactctcgcggt 137612



 Score =  147 bits (74), Expect = 4e-32
 Identities = 95/102 (93%)
 Strand = Plus / Plus

                                                                          
Query: 178    gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
              ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 136916 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 136975

                                                        
Query: 238    ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279
              |||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 136976 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 137017



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 278    agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337
              |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| |||||
Sbjct: 137126 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 137185

               
Query: 338    g 338
              |
Sbjct: 137186 g 137186



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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F09
          Length = 138277

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Plus

                                                                         
Query: 338   gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397
             |||||||| ||||||||||||||||||||   | |  |||||||||||||| ||||||||
Sbjct: 53620 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 53679

                                                                         
Query: 398   agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457
              || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 53680 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 53739

                                                                         
Query: 458   ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517
             ||||||||||||||| |||||  ||||  ||||||||||||||||||| ||| |||||||
Sbjct: 53740 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 53799

                         
Query: 518   cacactcgcggt 529
             ||| ||||||||
Sbjct: 53800 cactctcgcggt 53811



 Score =  147 bits (74), Expect = 4e-32
 Identities = 95/102 (93%)
 Strand = Plus / Plus

                                                                         
Query: 178   gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237
             ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 53115 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 53174

                                                       
Query: 238   ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279
             |||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 53175 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 53216



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 278   agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337
             |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| |||||
Sbjct: 53325 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 53384

              
Query: 338   g 338
             |
Sbjct: 53385 g 53385



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>ref|NM_193508.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  127 bits (64), Expect = 4e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254
           |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||
Sbjct: 10  gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 69

                                                   
Query: 255 accgcggcctccgctctcgatggagagaagaagaagcaga 294
           ||||| |||||||||||| | |||||||||  ||||||||
Sbjct: 70  accgctgcctccgctctccaaggagagaagctgaagcaga 109



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>dbj|AK102003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N06, full
           insert sequence
          Length = 947

 Score =  127 bits (64), Expect = 4e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254
           |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||
Sbjct: 118 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 177

                                                   
Query: 255 accgcggcctccgctctcgatggagagaagaagaagcaga 294
           ||||| |||||||||||| | |||||||||  ||||||||
Sbjct: 178 accgctgcctccgctctccaaggagagaagctgaagcaga 217



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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1064G04
          Length = 186704

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                          
Query: 195    gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254
              |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||
Sbjct: 169353 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 169412

                                
Query: 255    accgcggcctccgctctc 272
              ||||| ||||||||||||
Sbjct: 169413 accgctgcctccgctctc 169430



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>gb|AY105301.1| Zea mays PCO100019 mRNA sequence
          Length = 1051

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                       
Query: 185 catgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctc 244
           ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |
Sbjct: 169 catgagcaaggtgttcgagggctacgagcgccagtactgcgaggcgtccgcctccctcac 228

                                                             
Query: 245 ccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcaga 294
           |||||| |||||||| ||| |||| ||  | |||||||||  ||||||||
Sbjct: 229 ccgcaaatgcaccgccgccgccgccctacagggagagaagctgaagcaga 278



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 183     gccatgagcgaggtgttcgagggctac 209
               |||||| ||||||||||||||||||||
Sbjct: 3683365 gccatgcgcgaggtgttcgagggctac 3683391



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 153     gcgcgcgggcggaggcgatcgag 175
               |||||||||||||||||||||||
Sbjct: 2122075 gcgcgcgggcggaggcgatcgag 2122053



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 82      tcgtctcgatcatccgctcga 102
               |||||||||||||||||||||
Sbjct: 3658672 tcgtctcgatcatccgctcga 3658692



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 280      agaagaagaagcagaggctct 300
                |||||||||||||||||||||
Sbjct: 11765209 agaagaagaagcagaggctct 11765229



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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 280  agaagaagaagcagaggctct 300
            |||||||||||||||||||||
Sbjct: 8027 agaagaagaagcagaggctct 8047



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>dbj|AK073702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055D08, full
           insert sequence
          Length = 1204

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 agaagaagaagcagaggctct 300
           |||||||||||||||||||||
Sbjct: 797 agaagaagaagcagaggctct 777



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>ref|NM_120279.2| Arabidopsis thaliana unknown protein AT5G02010 mRNA, complete cds
          Length = 2133

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 tcgatggagagaagaagaag 290
           ||||||||||||||||||||
Sbjct: 504 tcgatggagagaagaagaag 523



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>gb|BT020213.1| Arabidopsis thaliana At5g02010 mRNA, complete cds
          Length = 1641

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 tcgatggagagaagaagaag 290
           ||||||||||||||||||||
Sbjct: 164 tcgatggagagaagaagaag 183



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>gb|BT015831.1| Arabidopsis thaliana At5g02010 gene, complete cds
          Length = 1940

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 tcgatggagagaagaagaag 290
           ||||||||||||||||||||
Sbjct: 326 tcgatggagagaagaagaag 345



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>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete
             Sequence, complete sequence
          Length = 211996

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tgagcgaggtgttcgagggc 206
             ||||||||||||||||||||
Sbjct: 68463 tgagcgaggtgttcgagggc 68444



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>ref|XM_790248.1| PREDICTED: Strongylocentrotus purpuratus similar to annexin VII
           isoform 1 (LOC590651), mRNA
          Length = 1229

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 acctcaagagcgagctcaag 452
           ||||||||||||||||||||
Sbjct: 212 acctcaagagcgagctcaag 231



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>emb|AL603745.16| Mouse DNA sequence from clone RP23-392I13 on chromosome 11 Contains the
             5' end of the Rad51l3 gene for RAD51-like 3 (S.
             cerevisiae), two novel genes, the gene for a novel WD40
             repeat containing protein, the Cmya4 gene for
             cardiomyopathy associated 4, a novel gene,  the Slfn5,
             Slfn9, Slfn8 and Slfn2 genes for schlafen 5, 9, 8 and 2, a
             SET domain-containing protein 8 (Set8) pseudogene, a
             ribosomal protein L12 (Rpl12) pseudogene, a schlafen
             (Slfn) pseudogene and a CpG island, complete sequence
          Length = 198392

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tgagcgaggtgttcgagggc 206
             ||||||||||||||||||||
Sbjct: 27283 tgagcgaggtgttcgagggc 27302



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>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project)
          Length = 87581

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   tcgatggagagaagaagaag 290
             ||||||||||||||||||||
Sbjct: 14669 tcgatggagagaagaagaag 14688



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>gb|AY061650.1| Toxoplasma gondii Snf2-related chromatin remodeling factor SRCAP
            (SRCAP) mRNA, complete cds
          Length = 8775

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  gagaagaagaagcagaggct 298
            ||||||||||||||||||||
Sbjct: 1741 gagaagaagaagcagaggct 1760



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 70      atcgaattgcggtcgtctcgatca 93
               ||||||||||||||| ||||||||
Sbjct: 5068859 atcgaattgcggtcgcctcgatca 5068882



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>emb|BX831766.1|CNS09ZO8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH28ZG06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 tcgatggagagaagaagaag 290
           ||||||||||||||||||||
Sbjct: 504 tcgatggagagaagaagaag 523



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>emb|BX832677.1|CNS09YP4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH8ZA11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1970

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 tcgatggagagaagaagaag 290
           ||||||||||||||||||||
Sbjct: 334 tcgatggagagaagaagaag 353



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>gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosome 14, complete
             sequence
          Length = 182146

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tcggaggatggacctggagg 360
             ||||||||||||||||||||
Sbjct: 95513 tcggaggatggacctggagg 95494



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>gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 from chromosome unknown,
             complete sequence
          Length = 160523

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ggcctccgctctcgatggag 279
             ||||||||||||||||||||
Sbjct: 18985 ggcctccgctctcgatggag 18966



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     cgagatccagtccggcgtgcagga 325
               ||||||||||| ||||||||||||
Sbjct: 3050141 cgagatccagtacggcgtgcagga 3050118



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>emb|BX088552.1|CNS09S4T Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone CITB-248O2 of library Caltech CITB-BAC from
             chromosome 11 of Mus musculus (mouse)
          Length = 190320

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tgagcgaggtgttcgagggc 206
             ||||||||||||||||||||
Sbjct: 34505 tgagcgaggtgttcgagggc 34524



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>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 4B7 of library Caltech CITB-BAC from chromosome 11
             of Mus musculus (mouse)
          Length = 132348

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tgagcgaggtgttcgagggc 206
             ||||||||||||||||||||
Sbjct: 48378 tgagcgaggtgttcgagggc 48359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,185,688
Number of Sequences: 3902068
Number of extensions: 4185688
Number of successful extensions: 118978
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118511
Number of HSP's gapped (non-prelim): 466
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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