Clone Name | bart31b06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK059962.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F05, full insert sequence Length = 1086 Score = 398 bits (201), Expect = e-108 Identities = 324/365 (88%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 204 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 263 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297 |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| || Sbjct: 264 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 323 Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357 | |||||||| |||||||||||| |||| ||||| ||||||||||||| ||||||||||| Sbjct: 324 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctgg 383 Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417 ||||||||| | | |||||||||||||| |||||||| || |||||| ||||||||| Sbjct: 384 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 443 Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477 |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 444 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 503 Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactg 537 | |||| ||||||||||||||||||| ||| |||||||||| ||||||| || |||| Sbjct: 504 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactg 563 Query: 538 atcag 542 ||||| Sbjct: 564 atcag 568
>dbj|AK072746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135J09, full insert sequence Length = 2300 Score = 396 bits (200), Expect = e-107 Identities = 314/352 (89%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 203 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 262 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297 |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| || Sbjct: 263 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 322 Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357 | |||||||| |||||||||||| |||| ||||| ||||||||||||| ||||||||||| Sbjct: 323 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctgg 382 Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417 ||||||||| | | |||||||||||||| |||||||| || |||||| ||||||||| Sbjct: 383 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 442 Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477 |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 443 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 502 Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggt 529 | |||| ||||||||||||||||||| ||| |||||||||| |||||||| Sbjct: 503 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggt 554
>dbj|AK104463.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C03, full insert sequence Length = 1092 Score = 391 bits (197), Expect = e-105 Identities = 323/365 (88%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 204 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 263 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggc 297 |||||| ||||||||||||| | |||||||| |||||||||||||| |||||||||| || Sbjct: 264 ccctcttccgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagc 323 Query: 298 tctccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctgg 357 | |||||||| |||||||||||| |||| ||||| ||||||||||| | ||||||||||| Sbjct: 324 tgtccgagattcagtccggcgtggaggaggctgagtcgctgattcgaaagatggacctgg 383 Query: 358 aggcgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtaca 417 ||||||||| | | |||||||||||||| |||||||| || |||||| ||||||||| Sbjct: 384 aggcgaggagcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtaca 443 Query: 418 aatccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggc 477 |||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 444 aatctgacctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggc 503 Query: 478 aaactacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactg 537 | |||| ||||||||||||||||||| ||| |||||||||| ||||||| || |||| Sbjct: 504 aggctacacgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactg 563 Query: 538 atcag 542 ||||| Sbjct: 564 atcag 568
>ref|NM_191661.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 383 bits (193), Expect = e-103 Identities = 316/357 (88%) Strand = Plus / Plus Query: 186 atgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcc 245 ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct: 1 atgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcctccctcttc 60 Query: 246 cgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggctctccgag 305 |||||||||||| | |||||||| |||||||||||||| |||||||||| ||| |||||| Sbjct: 61 cgcaagtgcaccaccgcctccgccctcgatggagagaaaaagaagcagaagctgtccgag 120 Query: 306 atccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctggaggcgagg 365 || |||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct: 121 attcagtccggcgtggaggaggctgagtcgctgattcggaagatggacctggaggcgagg 180 Query: 366 aatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtacaaatccgac 425 | | | |||||||||||||| |||||||| || |||||| ||||||||||||| ||| Sbjct: 181 agcctacaaccgagcgtgaaggccggtttgcttgcgaagctgagggagtacaaatctgac 240 Query: 426 cttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggcaaactacg 485 || ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||| Sbjct: 241 ctcaacaatctcaagagtgagcttaagaggatctcggcgcccaatgcaaggcaggctaca 300 Query: 486 agggaggagctccttgagtctggcatggctgacacactcgcggtttccactgatcag 542 ||||||||||||||||||| ||| |||||||||| ||||||| || ||||||||| Sbjct: 301 cgggaggagctccttgagtcaggcttggctgacactctcgcggcgtctactgatcag 357
>gb|AY104165.1| Zea mays PCO134015 mRNA sequence Length = 1189 Score = 369 bits (186), Expect = 6e-99 Identities = 318/362 (87%) Strand = Plus / Plus Query: 181 cagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccc 240 |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | Sbjct: 266 cagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggcctccgcctcgc 325 Query: 241 tctcccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcagaggctct 300 |||||||||||||||| || || ||||| ||||||||||||| ||||||||||| ||||| Sbjct: 326 tctcccgcaagtgcacggctgcatccgccctcgatggagagaggaagaagcagaagctct 385 Query: 301 ccgagatccagtccggcgtgcaggaagctgaatcgctgattcggaggatggacctggagg 360 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 386 ccgagatccagtccggcgttgaggaagctgaatcgctgattcggaagatggacctggagg 445 Query: 361 cgaggaatatgccgccgagcgtgaaggcgggtttgctagctaagctgcgggagtacaaat 420 | |||| | | ||| ||| | ||||| |||||||| || |||||| ||||||| |||| Sbjct: 446 caaggagcctacagcctagcattaaggctggtttgcttgcaaagctgagggagtataaat 505 Query: 421 ccgaccttaacaacctcaagagcgagctcaagaggatctcggcgcccaatgccaggcaaa 480 | ||||| |||||| ||||||| |||||||||||||| || ||||||||||| ||||| Sbjct: 506 ctgacctcaacaacgtcaagagtgagctcaagaggatatctgcgcccaatgctaggcagg 565 Query: 481 ctacgagggaggagctccttgagtctggcatggctgacacactcgcggtttccactgatc 540 |||| ||||||||||||| |||||||| |||||||| || |||||||| || ||||||| Sbjct: 566 ctacccgggaggagctcctggagtctggaatggctgatactctcgcggtgtctactgatc 625 Query: 541 ag 542 || Sbjct: 626 ag 627
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Plus Query: 338 gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397 |||||||| |||||||||||||||||||| | | |||||||||||||| |||||||| Sbjct: 29358558 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 29358617 Query: 398 agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457 || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct: 29358618 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 29358677 Query: 458 ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517 ||||||||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||| Sbjct: 29358678 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 29358737 Query: 518 cacactcgcggt 529 ||| |||||||| Sbjct: 29358738 cactctcgcggt 29358749 Score = 147 bits (74), Expect = 4e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 29358053 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 29358112 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279 |||||| ||||||||||||| | |||||||| |||||||||| Sbjct: 29358113 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 29358154 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 21271844 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 21271903 Query: 255 accgcggcctccgctctc 272 ||||| |||||||||||| Sbjct: 21271904 accgctgcctccgctctc 21271921 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 278 agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337 |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| ||||| Sbjct: 29358263 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 29358322 Query: 338 g 338 | Sbjct: 29358323 g 29358323
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Plus Query: 338 gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397 |||||||| |||||||||||||||||||| | | |||||||||||||| |||||||| Sbjct: 137421 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 137480 Query: 398 agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457 || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct: 137481 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 137540 Query: 458 ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517 ||||||||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||| Sbjct: 137541 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 137600 Query: 518 cacactcgcggt 529 ||| |||||||| Sbjct: 137601 cactctcgcggt 137612 Score = 147 bits (74), Expect = 4e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 136916 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 136975 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279 |||||| ||||||||||||| | |||||||| |||||||||| Sbjct: 136976 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 137017 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 278 agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337 |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| ||||| Sbjct: 137126 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 137185 Query: 338 g 338 | Sbjct: 137186 g 137186
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F09 Length = 138277 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Plus Query: 338 gattcggaggatggacctggaggcgaggaatatgccgccgagcgtgaaggcgggtttgct 397 |||||||| |||||||||||||||||||| | | |||||||||||||| |||||||| Sbjct: 53620 gattcggaagatggacctggaggcgaggagcctacaaccgagcgtgaaggccggtttgct 53679 Query: 398 agctaagctgcgggagtacaaatccgaccttaacaacctcaagagcgagctcaagaggat 457 || |||||| ||||||||||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct: 53680 tgcgaagctgagggagtacaaatctgacctcaacaatctcaagagtgagcttaagaggat 53739 Query: 458 ctcggcgcccaatgccaggcaaactacgagggaggagctccttgagtctggcatggctga 517 ||||||||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||| Sbjct: 53740 ctcggcgcccaatgcaaggcaggctacacgggaggagctccttgagtcaggcttggctga 53799 Query: 518 cacactcgcggt 529 ||| |||||||| Sbjct: 53800 cactctcgcggt 53811 Score = 147 bits (74), Expect = 4e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 178 gagcagccatgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcct 237 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 53115 gagcagccatgagcgaggtgttcgagggctacgagcggcagtactgcgaggtgtccgcct 53174 Query: 238 ccctctcccgcaagtgcaccgcggcctccgctctcgatggag 279 |||||| ||||||||||||| | |||||||| |||||||||| Sbjct: 53175 ccctcttccgcaagtgcaccaccgcctccgccctcgatggag 53216 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 278 agagaagaagaagcagaggctctccgagatccagtccggcgtgcaggaagctgaatcgct 337 |||||| |||||||||| ||| |||||||| |||||||||||| |||| ||||| ||||| Sbjct: 53325 agagaaaaagaagcagaagctgtccgagattcagtccggcgtggaggaggctgagtcgct 53384 Query: 338 g 338 | Sbjct: 53385 g 53385
>ref|NM_193508.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 127 bits (64), Expect = 4e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 10 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 69 Query: 255 accgcggcctccgctctcgatggagagaagaagaagcaga 294 ||||| |||||||||||| | ||||||||| |||||||| Sbjct: 70 accgctgcctccgctctccaaggagagaagctgaagcaga 109
>dbj|AK102003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N06, full insert sequence Length = 947 Score = 127 bits (64), Expect = 4e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 118 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 177 Query: 255 accgcggcctccgctctcgatggagagaagaagaagcaga 294 ||||| |||||||||||| | ||||||||| |||||||| Sbjct: 178 accgctgcctccgctctccaaggagagaagctgaagcaga 217
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 195 gtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctcccgcaagtgc 254 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 169353 gtgttcgagggctacgagcgccagtactgcgagatctccgcctccctcgcccgcaagtgc 169412 Query: 255 accgcggcctccgctctc 272 ||||| |||||||||||| Sbjct: 169413 accgctgcctccgctctc 169430
>gb|AY105301.1| Zea mays PCO100019 mRNA sequence Length = 1051 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 185 catgagcgaggtgttcgagggctacgagcgccagtactgcgaggaatccgcctccctctc 244 ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 169 catgagcaaggtgttcgagggctacgagcgccagtactgcgaggcgtccgcctccctcac 228 Query: 245 ccgcaagtgcaccgcggcctccgctctcgatggagagaagaagaagcaga 294 |||||| |||||||| ||| |||| || | ||||||||| |||||||| Sbjct: 229 ccgcaaatgcaccgccgccgccgccctacagggagagaagctgaagcaga 278
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 gccatgagcgaggtgttcgagggctac 209 |||||| |||||||||||||||||||| Sbjct: 3683365 gccatgcgcgaggtgttcgagggctac 3683391
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 gcgcgcgggcggaggcgatcgag 175 ||||||||||||||||||||||| Sbjct: 2122075 gcgcgcgggcggaggcgatcgag 2122053
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 tcgtctcgatcatccgctcga 102 ||||||||||||||||||||| Sbjct: 3658672 tcgtctcgatcatccgctcga 3658692
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 agaagaagaagcagaggctct 300 ||||||||||||||||||||| Sbjct: 11765209 agaagaagaagcagaggctct 11765229
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 agaagaagaagcagaggctct 300 ||||||||||||||||||||| Sbjct: 8027 agaagaagaagcagaggctct 8047
>dbj|AK073702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055D08, full insert sequence Length = 1204 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 agaagaagaagcagaggctct 300 ||||||||||||||||||||| Sbjct: 797 agaagaagaagcagaggctct 777
>ref|NM_120279.2| Arabidopsis thaliana unknown protein AT5G02010 mRNA, complete cds Length = 2133 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 504 tcgatggagagaagaagaag 523
>gb|BT020213.1| Arabidopsis thaliana At5g02010 mRNA, complete cds Length = 1641 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 164 tcgatggagagaagaagaag 183
>gb|BT015831.1| Arabidopsis thaliana At5g02010 gene, complete cds Length = 1940 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 326 tcgatggagagaagaagaag 345
>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete Sequence, complete sequence Length = 211996 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tgagcgaggtgttcgagggc 206 |||||||||||||||||||| Sbjct: 68463 tgagcgaggtgttcgagggc 68444
>ref|XM_790248.1| PREDICTED: Strongylocentrotus purpuratus similar to annexin VII isoform 1 (LOC590651), mRNA Length = 1229 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 acctcaagagcgagctcaag 452 |||||||||||||||||||| Sbjct: 212 acctcaagagcgagctcaag 231
>emb|AL603745.16| Mouse DNA sequence from clone RP23-392I13 on chromosome 11 Contains the 5' end of the Rad51l3 gene for RAD51-like 3 (S. cerevisiae), two novel genes, the gene for a novel WD40 repeat containing protein, the Cmya4 gene for cardiomyopathy associated 4, a novel gene, the Slfn5, Slfn9, Slfn8 and Slfn2 genes for schlafen 5, 9, 8 and 2, a SET domain-containing protein 8 (Set8) pseudogene, a ribosomal protein L12 (Rpl12) pseudogene, a schlafen (Slfn) pseudogene and a CpG island, complete sequence Length = 198392 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tgagcgaggtgttcgagggc 206 |||||||||||||||||||| Sbjct: 27283 tgagcgaggtgttcgagggc 27302
>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project) Length = 87581 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 14669 tcgatggagagaagaagaag 14688
>gb|AY061650.1| Toxoplasma gondii Snf2-related chromatin remodeling factor SRCAP (SRCAP) mRNA, complete cds Length = 8775 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gagaagaagaagcagaggct 298 |||||||||||||||||||| Sbjct: 1741 gagaagaagaagcagaggct 1760
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 atcgaattgcggtcgtctcgatca 93 ||||||||||||||| |||||||| Sbjct: 5068859 atcgaattgcggtcgcctcgatca 5068882
>emb|BX831766.1|CNS09ZO8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZG06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1948 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 504 tcgatggagagaagaagaag 523
>emb|BX832677.1|CNS09YP4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1970 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcgatggagagaagaagaag 290 |||||||||||||||||||| Sbjct: 334 tcgatggagagaagaagaag 353
>gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosome 14, complete sequence Length = 182146 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tcggaggatggacctggagg 360 |||||||||||||||||||| Sbjct: 95513 tcggaggatggacctggagg 95494
>gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 from chromosome unknown, complete sequence Length = 160523 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ggcctccgctctcgatggag 279 |||||||||||||||||||| Sbjct: 18985 ggcctccgctctcgatggag 18966
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 cgagatccagtccggcgtgcagga 325 ||||||||||| |||||||||||| Sbjct: 3050141 cgagatccagtacggcgtgcagga 3050118
>emb|BX088552.1|CNS09S4T Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone CITB-248O2 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 190320 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tgagcgaggtgttcgagggc 206 |||||||||||||||||||| Sbjct: 34505 tgagcgaggtgttcgagggc 34524
>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 4B7 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 132348 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tgagcgaggtgttcgagggc 206 |||||||||||||||||||| Sbjct: 48378 tgagcgaggtgttcgagggc 48359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,185,688 Number of Sequences: 3902068 Number of extensions: 4185688 Number of successful extensions: 118978 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118511 Number of HSP's gapped (non-prelim): 466 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)