Clone Information

BLAST Search Result

Clone Name	bart31b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK103593.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	137	5e-29
2	gb\|AY105377.1\| Zea mays PCO061803 mRNA sequence	100	1e-17
3	ref\|NM_189475.1\| Oryza sativa (japonica cultivar-group), predic...	98	4e-17
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
5	dbj\|AP003298.3\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
6	dbj\|AP003277.2\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
7	gb\|DQ460113.1\| Nicotiana tabacum cDNA-AFLP fragment N_BC3M13-2 s...	58	3e-05
8	ref\|NM_116069.3\| Arabidopsis thaliana catalytic/ hydrolase AT3G6...	52	0.002
9	gb\|BT010899.1\| Arabidopsis thaliana At3g62040 mRNA, complete cds	52	0.002
10	emb\|BX822714.1\|CNS0A7T1 Arabidopsis thaliana Full-length cDNA Co...	52	0.002
11	ref\|XM_477103.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.13
12	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
13	dbj\|AP003748.4\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
14	dbj\|AK120944.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
15	gb\|AY106832.1\| Zea mays PCO074808 mRNA sequence	44	0.51
16	gb\|AC135595.5\| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genom...	42	2.0
17	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	2.0
18	emb\|AL138651.1\|ATT17J13 Arabidopsis thaliana DNA chromosome 3, B...	42	2.0
19	emb\|AL138642.1\|ATF21F14 Arabidopsis thaliana DNA chromosome 3, B...	42	2.0
20	gb\|AE012315.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	42	2.0
21	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	42	2.0
22	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.0
23	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	2.0
24	dbj\|AK065100.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.0
25	gb\|AC172877.1\| Brassica rapa subsp. pekinensis clone KBrH042F19,...	42	2.0
26	gb\|AE014295.3\| Bifidobacterium longum NCC2705, complete genome	42	2.0
27	dbj\|AB070944.1\| Streptomyces avermitilis polyketide-4 biosynthet...	42	2.0
28	ref\|XM_476616.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.9
29	gb\|AY316747.1\| Rhizobium sp. NGR234 megaplasmid 2 contig 1, comp...	40	7.9
30	emb\|AL451044.7\| Human DNA sequence from clone RP11-293K19 on chr...	40	7.9
31	emb\|AL365338.17\| Human DNA sequence from clone RP11-123N4 on chr...	40	7.9
32	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	40	7.9
33	emb\|AL939127.1\|SCO939127 Streptomyces coelicolor A3(2) complete ...	40	7.9
34	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	40	7.9
35	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	40	7.9
36	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	7.9
37	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
38	gb\|AF320981.3\| Pseudomonas sp. S-47 B1,2O large a subunit (XylX)...	40	7.9
39	dbj\|AP004263.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
40	emb\|AJ237988.1\|VVI237988 Vitis vinifera mRNA for putative ripeni...	40	7.9
41	dbj\|AP003957.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
42	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	7.9
43	gb\|AC007172.6\|AC007172 Homo sapiens chromosome 9, clone hRPK.538...	40	7.9
44	gb\|U51165.1\|COU51165 Cycloclasticus oligotrophus XYLX (XYLX), pa...	40	7.9
45	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
46	emb\|BX649219.2\|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F...	40	7.9
47	emb\|AL358341.3\|CNS05TEC Human chromosome 14 DNA sequence BAC R-1...	40	7.9

>dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D12, full
           insert sequence
          Length = 1303

 Score =  137 bits (69), Expect = 5e-29
 Identities = 228/281 (81%)
 Strand = Plus / Plus

                                                                       
Query: 283 gagctctgcatcctcctctacaagcagtatggaaccaccatggccggtctcagggccatt 342
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| | |||||  ||
Sbjct: 422 gagctatgcgtcctcctctacaagcagtatggaactaccatggccggtttgagggctgtt 481

                                                                       
Query: 343 gggtaccaattcgactacgatgatttccacggctttgttcacggaaggttggcctacgaa 402
           |||||||| || || || || || |||||| ||| |||||| ||||||||||| || || 
Sbjct: 482 gggtaccagtttgattatgacgacttccacagctatgttcatggaaggttggcttatgag 541

                                                                       
Query: 403 aagctcaagcccgacccggtgctcaggaacatcctcctcagcctacccatccgcaaactc 462
           ||  | ||||| || || || || |||||||| ||||| ||| | || ||||||||| | 
Sbjct: 542 aaaattaagcctgatccagtacttaggaacattctcctaagcttgccaatccgcaaagtt 601

                                                                       
Query: 463 gtgttcacgaacggtgacaggctccatgcttcgagggccatgaagaggctcggaatcgat 522
           || ||||| || ||||||||  | |||||||| |||||| | |||||||| ||||| || 
Sbjct: 602 gtcttcacaaatggtgacagaattcatgcttcaagggccctcaagaggctaggaatagaa 661

                                                    
Query: 523 gactgcttcgagggggttctgtgctttgagacattgaaccc 563
           || ||||| ||  | ||| |||||||||||||| |||||||
Sbjct: 662 gattgctttgaaagagttgtgtgctttgagacactgaaccc 702



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 155 gcgactgcctcctcttcgacctcgatgacacgctctacccggtg 198
           ||||| ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 294 gcgacagcctcgtcttcgaccttgatgacacgctgtatccggtg 337

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>gb|AY105377.1| Zea mays PCO061803 mRNA sequence
          Length = 679

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 119/142 (83%)
 Strand = Plus / Plus

                                                                       
Query: 428 ggaacatcctcctcagcctacccatccgcaaactcgtgttcacgaacggtgacaggctcc 487
           ||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||    |
Sbjct: 13  ggaacatcctcctcagcttacccattcgcaaacttgtgttcacaaacggtgacagaacac 72

                                                                       
Query: 488 atgcttcgagggccatgaagaggctcggaatcgatgactgcttcgagggggttctgtgct 547
           ||||||| |||||| | |||||||| || || || || || ||||| || ||  ||||||
Sbjct: 73  atgcttcaagggccctcaagaggcttggcattgaggattgtttcgaaggagtcgtgtgct 132

                                 
Query: 548 ttgagacattgaacccggcatc 569
           |||||||| |||||||| ||||
Sbjct: 133 ttgagacactgaacccgacatc 154

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>ref|NM_189475.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 97/113 (85%)
 Strand = Plus / Plus

                                                                       
Query: 283 gagctctgcatcctcctctacaagcagtatggaaccaccatggccggtctcagggccatt 342
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| | |||||  ||
Sbjct: 172 gagctatgcgtcctcctctacaagcagtatggaactaccatggccggtttgagggctgtt 231

                                                                
Query: 343 gggtaccaattcgactacgatgatttccacggctttgttcacggaaggttggc 395
           |||||||| || || || || || |||||| ||| |||||| |||||||||||
Sbjct: 232 gggtaccagtttgattatgacgacttccacagctatgttcatggaaggttggc 284



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 466 ttcacgaacggtgacaggctccatgcttcgagggccatgaagaggctcggaatcgatgac 525
           ||||| || ||||||||  | |||||||| |||||| | |||||||| ||||| || || 
Sbjct: 379 ttcacaaatggtgacagaattcatgcttcaagggccctcaagaggctaggaatagaagat 438

                                                 
Query: 526 tgcttcgagggggttctgtgctttgagacattgaaccc 563
           ||||| ||  | ||| |||||||||||||| |||||||
Sbjct: 439 tgctttgaaagagttgtgtgctttgagacactgaaccc 476



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 155 gcgactgcctcctcttcgacctcgatgacacgctctacccggtg 198
           ||||| ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 44  gcgacagcctcgtcttcgaccttgatgacacgctgtatccggtg 87

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 283      gagctctgcatcctcctctacaagcagtatggaaccaccatggccggt 330
                ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 42947644 gagctatgcgtcctcctctacaagcagtatggaactaccatggccggt 42947691



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                            
Query: 466      ttcacgaacggtgacaggctccatgcttcgagggccatgaagaggctcggaatcgatgac 525
                ||||| || ||||||||  | |||||||| |||||| | |||||||| ||||| || || 
Sbjct: 42948104 ttcacaaatggtgacagaattcatgcttcaagggccctcaagaggctaggaatagaagat 42948163

                                                      
Query: 526      tgcttcgagggggttctgtgctttgagacattgaaccc 563
                ||||| ||  | ||| |||||||||||||| |||||||
Sbjct: 42948164 tgctttgaaagagttgtgtgctttgagacactgaaccc 42948201

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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 283   gagctctgcatcctcctctacaagcagtatggaaccaccatggccggt 330
             ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 48523 gagctatgcgtcctcctctacaagcagtatggaactaccatggccggt 48570



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                         
Query: 466   ttcacgaacggtgacaggctccatgcttcgagggccatgaagaggctcggaatcgatgac 525
             ||||| || ||||||||  | |||||||| |||||| | |||||||| ||||| || || 
Sbjct: 48983 ttcacaaatggtgacagaattcatgcttcaagggccctcaagaggctaggaatagaagat 49042

                                                   
Query: 526   tgcttcgagggggttctgtgctttgagacattgaaccc 563
             ||||| ||  | ||| |||||||||||||| |||||||
Sbjct: 49043 tgctttgaaagagttgtgtgctttgagacactgaaccc 49080

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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 283    gagctctgcatcctcctctacaagcagtatggaaccaccatggccggt 330
              ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 141378 gagctatgcgtcctcctctacaagcagtatggaactaccatggccggt 141425



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                          
Query: 466    ttcacgaacggtgacaggctccatgcttcgagggccatgaagaggctcggaatcgatgac 525
              ||||| || ||||||||  | |||||||| |||||| | |||||||| ||||| || || 
Sbjct: 141838 ttcacaaatggtgacagaattcatgcttcaagggccctcaagaggctaggaatagaagat 141897

                                                    
Query: 526    tgcttcgagggggttctgtgctttgagacattgaaccc 563
              ||||| ||  | ||| |||||||||||||| |||||||
Sbjct: 141898 tgctttgaaagagttgtgtgctttgagacactgaaccc 141935

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>gb|DQ460113.1| Nicotiana tabacum cDNA-AFLP fragment N_BC3M13-2 sequence
          Length = 411

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 308 agtatggaaccaccatggccggtctcagggccattgg 344
           |||||||||| |||||||| |||||||||||||||||
Sbjct: 52  agtatggaacaaccatggctggtctcagggccattgg 88

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>ref|NM_116069.3| Arabidopsis thaliana catalytic/ hydrolase AT3G62040 mRNA, complete
           cds
          Length = 867

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 310 tatggaaccaccatggccggtctcagggccattgggtaccaattcgactacgatgatttc 369
           ||||||||||||||||| ||||||| ||  || || ||| |||||||| ||||||| |||
Sbjct: 243 tatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaattc 302

             
Query: 370 ca 371
           ||
Sbjct: 303 ca 304

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>gb|BT010899.1| Arabidopsis thaliana At3g62040 mRNA, complete cds
          Length = 750

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 310 tatggaaccaccatggccggtctcagggccattgggtaccaattcgactacgatgatttc 369
           ||||||||||||||||| ||||||| ||  || || ||| |||||||| ||||||| |||
Sbjct: 178 tatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaattc 237

             
Query: 370 ca 371
           ||
Sbjct: 238 ca 239

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>emb|BX822714.1|CNS0A7T1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 885

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 310 tatggaaccaccatggccggtctcagggccattgggtaccaattcgactacgatgatttc 369
           ||||||||||||||||| ||||||| ||  || || ||| |||||||| ||||||| |||
Sbjct: 260 tatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaattc 319

             
Query: 370 ca 371
           ||
Sbjct: 320 ca 321

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>ref|XM_477103.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2292

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 141  cggccgccccacctgcgactgcctcctcttcgacc 175
            ||||||||||||| ||||||||||| ||| |||||
Sbjct: 1626 cggccgccccacccgcgactgcctcttctccgacc 1660

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 141     cggccgccccacctgcgactgcctcctcttcgacc 175
               ||||||||||||| ||||||||||| ||| |||||
Sbjct: 5923774 cggccgccccacccgcgactgcctcttctccgacc 5923740



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     gacggccgccccacctgcga 158
               ||||||||||||||||||||
Sbjct: 2461677 gacggccgccccacctgcga 2461658

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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 141   cggccgccccacctgcgactgcctcctcttcgacc 175
             ||||||||||||| ||||||||||| ||| |||||
Sbjct: 66222 cggccgccccacccgcgactgcctcttctccgacc 66188

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>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full
            insert sequence
          Length = 2827

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 141  cggccgccccacctgcgactgcctcctcttcgacc 175
            ||||||||||||| ||||||||||| ||| |||||
Sbjct: 1856 cggccgccccacccgcgactgcctcttctccgacc 1890

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>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 172/222 (77%)
 Strand = Plus / Plus

                                                                       
Query: 316 accaccatggccggtctcagggccattgggtaccaattcgactacgatgatttccacggc 375
           ||||| ||||| || ||||||||||| || |||   ||||| |||||||| | ||||| |
Sbjct: 370 accacgatggctggactcagggccatcggctacagcttcgattacgatgagtaccacgcc 429

                                                                       
Query: 376 tttgttcacggaaggttggcctacgaaaagctcaagcccgacccggtgctcaggaacatc 435
           || || || ||||||||| | ||||| ||  ||||||| |||||  | |||| | |||| 
Sbjct: 430 ttcgtccatggaaggttgccgtacgacaacatcaagcctgaccccattctcaagcacatt 489

                                                                       
Query: 436 ctcctcagcctacccatccgcaaactcgtgttcacgaacggtgacaggctccatgcttcg 495
           |||   | ||| | ||||||||||||| | ||||| |||||||||| | |||| ||   |
Sbjct: 490 ctcaagaacctgcgcatccgcaaactcatattcaccaacggtgacatggtccacgccgtg 549

                                                     
Query: 496 agggccatgaagaggctcggaatcgatgactgcttcgagggg 537
           || ||| | |||||||| ||  | || |||||||||||||||
Sbjct: 550 agagccctcaagaggctgggcctggaggactgcttcgagggg 591



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 156 cgactgcctcctcttcgacctcgatgacac 185
           ||||||||| |||||||||||||| |||||
Sbjct: 210 cgactgcctgctcttcgacctcgacgacac 239

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>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete
              sequence
          Length = 166888

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 141    cggccgccccacctgcgactgcctc 165
              ||||||||||||| |||||||||||
Sbjct: 135845 cggccgccccacccgcgactgcctc 135821

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 141      cggccgccccacctgcgactgcctc 165
                ||||||||||||| |||||||||||
Sbjct: 33529235 cggccgccccacccgcgactgcctc 33529259

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>emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13
          Length = 85217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 310  tatggaaccaccatggccggtctca 334
            ||||||||||||||||| |||||||
Sbjct: 3787 tatggaaccaccatggctggtctca 3763

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>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14
          Length = 142001

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 310    tatggaaccaccatggccggtctca 334
              ||||||||||||||||| |||||||
Sbjct: 138814 tatggaaccaccatggctggtctca 138790

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>gb|AE012315.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 223
            of 460 of the complete genome
          Length = 11231

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 248  tcgacaagctcggcatcgaca 268
            |||||||||||||||||||||
Sbjct: 4671 tcgacaagctcggcatcgaca 4651

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     tcgacaagctcggcatcgaca 268
               |||||||||||||||||||||
Sbjct: 2516116 tcgacaagctcggcatcgaca 2516136

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 141      cggccgccccacctgcgactgcctc 165
                ||||||||||||| |||||||||||
Sbjct: 33619707 cggccgccccacccgcgactgcctc 33619731

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 251     acaagctcggcatcgacaagg 271
               |||||||||||||||||||||
Sbjct: 8553227 acaagctcggcatcgacaagg 8553247



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 131     acggcgacgacggccgcccc 150
               ||||||||||||||||||||
Sbjct: 6013895 acggcgacgacggccgcccc 6013876

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>dbj|AK065100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N01, full
            insert sequence
          Length = 2646

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 141  cggccgccccacctgcgactgcctc 165
            ||||||||||||| |||||||||||
Sbjct: 1811 cggccgccccacccgcgactgcctc 1835

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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   tatggaaccaccatggccggtctca 334
             ||||||||||||||||| |||||||
Sbjct: 69393 tatggaaccaccatggctggtctca 69417

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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 123     cgccaagtacggcgacgacggccgc 147
               ||||||||||||||||||| |||||
Sbjct: 1616799 cgccaagtacggcgacgaccgccgc 1616775

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>dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthetic gene cluster
          Length = 19601

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 251  acaagctcggcatcgacaagg 271
            |||||||||||||||||||||
Sbjct: 5167 acaagctcggcatcgacaagg 5187

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>ref|XM_476616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1245

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  gacggccgccccacctgcga 158
            ||||||||||||||||||||
Sbjct: 1222 gacggccgccccacctgcga 1203

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>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence
          Length = 357655

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 238    gaatacatggtcgacaagctcggc 261
              ||||||||| ||||||||||||||
Sbjct: 339745 gaatacatgctcgacaagctcggc 339768

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>emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chromosome 1 Contains part
              of the DOCK7 gene for dedicator of cytokinesis 7, complete
              sequence
          Length = 127370

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    tcctcctcagcctacccatc 453
              ||||||||||||||||||||
Sbjct: 121104 tcctcctcagcctacccatc 121123

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>emb|AL365338.17| Human DNA sequence from clone RP11-123N4 on chromosome 9 Contain the 3'
             end of the gene for rab6 GTPase activating protein (GAP
             and centrosome-associated) (GAPCENA), a pseudogene similar
             to part of thyroid receptor interacting protein 15
             (TRIP15), the 3' end of the STRBP gene for spermatid
             perinuclear RNA binding protein (FLJ11307), a novel gene
             (GL012) and a CpG island, complete sequence
          Length = 150230

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   tcctcctcagcctacccatc 453
             ||||||||||||||||||||
Sbjct: 26536 tcctcctcagcctacccatc 26555

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 121     ggcgccaagtacggcgacgacggc 144
               ||||||||||||| ||||||||||
Sbjct: 3360984 ggcgccaagtacgacgacgacggc 3360961

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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    agtacggcgacgacggccgc 147
              ||||||||||||||||||||
Sbjct: 146393 agtacggcgacgacggccgc 146412

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 92      tcggccggccggtcgaaatgggcc 115
               ||||||||||||| ||||||||||
Sbjct: 1014301 tcggccggccggtggaaatgggcc 1014278

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     gacaagggcgtcagcctcga 284
               ||||||||||||||||||||
Sbjct: 2839163 gacaagggcgtcagcctcga 2839144

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    caagctcggcatcgacaagg 271
              ||||||||||||||||||||
Sbjct: 954149 caagctcggcatcgacaagg 954168

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      gacggccgccccacctgcga 158
                ||||||||||||||||||||
Sbjct: 16174431 gacggccgccccacctgcga 16174412

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>gb|AF320981.3| Pseudomonas sp. S-47 B1,2O large a subunit (XylX), B1,2O small b
             subunit (XylY), B1,2O reductase component (XylZ),
             4CBA-dihydrodiol dehydrogenase (xylL), probable plant-type
             ferredoxin (xylT), catechol 2,3-dioxygenase (xylE),
             hydroxymuconic semialdehyde dehydrogenase (xylG),
             hydroxymuconic semialdehyde hydrolase (xylF),
             2-oxopent-4-enoate hydrotase (xylJ), acetaldehyde
             dehydrogenase (xylQ), 2-oxo-4-hydroxy pentanoate aldolase
             (xylK), 4-oxalocrotonate decarboxylase (xylI),
             4-oxalocrotonate tautomerase (xylH), putative transposase,
             regulatory protein (xylS), and regulatory protein (xylR)
             genes, complete cds
          Length = 16886

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   atcgacaagggcgtcagcctcgag 285
             |||||| |||||||||||||||||
Sbjct: 16305 atcgaccagggcgtcagcctcgag 16328

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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gacggccgccccacctgcga 158
             ||||||||||||||||||||
Sbjct: 26657 gacggccgccccacctgcga 26638

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>emb|AJ237988.1|VVI237988 Vitis vinifera mRNA for putative ripening-related protein (grip21
           gene)
          Length = 1190

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 301 tacaagcagtatggaaccaccatggccggtctcagggccattgg 344
           |||||| | ||||| || || ||||||||||||||||| |||||
Sbjct: 296 tacaagaattatgggacaacaatggccggtctcagggcaattgg 339

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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gacggccgccccacctgcga 158
             ||||||||||||||||||||
Sbjct: 35424 gacggccgccccacctgcga 35405

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     ccgccccacctgcgactgcc 163
               ||||||||||||||||||||
Sbjct: 1606973 ccgccccacctgcgactgcc 1606954

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>gb|AC007172.6|AC007172 Homo sapiens chromosome 9, clone hRPK.538_E_7, complete sequence
          Length = 168535

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    tcctcctcagcctacccatc 453
              ||||||||||||||||||||
Sbjct: 130350 tcctcctcagcctacccatc 130331

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>gb|U51165.1|COU51165 Cycloclasticus oligotrophus XYLX (XYLX), partial cds, membrane
            protein (XYLM), glutathione S-transferase (XYLK),
            2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate dehydrogenase
            (XYLG), iron sulfur protein large subunit (XYLC1), iron
            sulfur protein small subunit (XYLC2), genes, complete cds
          Length = 5729

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 111  gggccacgagggcgccaagtacgg 134
            |||||||||||| |||||||||||
Sbjct: 4546 gggccacgagggtgccaagtacgg 4523

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      gacggccgccccacctgcga 158
                ||||||||||||||||||||
Sbjct: 16127664 gacggccgccccacctgcga 16127645

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>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   gacggccgccccacctgcga 158
             ||||||||||||||||||||
Sbjct: 68912 gacggccgccccacctgcga 68931

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>emb|AL358341.3|CNS05TEC Human chromosome 14 DNA sequence BAC R-1126O17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 136905

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   tcctcctcagcctacccatc 453
             ||||||||||||||||||||
Sbjct: 74265 tcctcctcagcctacccatc 74246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,377,103
Number of Sequences: 3902068
Number of extensions: 3377103
Number of successful extensions: 64161
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63234
Number of HSP's gapped (non-prelim): 925
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result