ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart31a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF479042.1| Triticum aestivum aldolase mRNA, partial cds 274 1e-70
2gb|AY106811.1| Zea mays PCO109530 mRNA sequence 180 1e-42
3ref|NM_184115.2| Oryza sativa (japonica cultivar-group), mRNA 178 4e-42
4dbj|AK099387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 4e-42
5dbj|AK059097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 4e-42
6dbj|D10419.1|RICT25 Oryza sativa mRNA for aldolase (T25 gene), p... 163 3e-37
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 3e-34
8dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 153 3e-34
9emb|Y10380.1|STPLASALD Solanum tuberosum partial mRNA for protei... 48 0.011
10gb|AC103576.8| Rattus norvegicus 12 BAC CH230-63N13 (Children's ... 44 0.17
11gb|AC000091.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 91c ... 42 0.66
12gb|AC122869.4| Mus musculus BAC clone RP23-101O19 from chromosom... 40 2.6
13gb|AC127227.3| Mus musculus BAC clone RP24-505M10 from chromosom... 40 2.6
14gb|BT012701.1| Lycopersicon esculentum clone 113575F, mRNA sequence 40 2.6
15gb|BT012696.1| Lycopersicon esculentum clone 113566F, mRNA sequence 40 2.6
16gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosom... 40 2.6
17gb|AC154905.5| Mus musculus BAC clone RP23-369A18 from chromosom... 40 2.6
18gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome ... 40 2.6
19gb|AC128701.3| Mus musculus BAC clone RP24-131M3 from chromosome... 40 2.6
20gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7... 40 2.6
21gb|CP000249.1| Frankia sp. CcI3, complete genome 40 2.6
22gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosom... 40 2.6
23gb|AC157592.6| Mus musculus BAC clone RP23-331M13 from chromosom... 40 2.6
24gb|AC172367.1| Mus musculus BAC clone RP23-342N5 from chromosome... 40 2.6
25gb|AC171682.2| Mus musculus BAC clone RP24-101E7 from chromosome... 40 2.6
26gb|AC170803.2| Mus musculus BAC clone RP24-418J23 from chromosom... 40 2.6
27gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosom... 40 2.6
28gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosom... 40 2.6
29gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome... 40 2.6
30dbj|AB027002.1| Nicotiana paniculata mRNA for plastidic aldolase... 40 2.6 
>gb|AF479042.1| Triticum aestivum aldolase mRNA, partial cds
          Length = 666

 Score =  274 bits (138), Expect = 1e-70
 Identities = 150/154 (97%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 184

                                                                       
Query: 112 caagtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaacc 171
           | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 185 cgagtgcaacatgtggaaagagattggcatccattggtttggacaacaccgaagttaacc 244

                                             
Query: 172 gccaggcttacaggcagcttttgctgaccactgc 205
           ||||||||||||||||||| ||||||||||||||
Sbjct: 245 gccaggcttacaggcagctgttgctgaccactgc 278



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 9   cgcccgccgcgcctcgctcgtccgcgtccgcgcctccggcgg 50
           ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 66  cgcccgccgcgcctcgcgcgtccgcgtccgcgcctccggcgg 107
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>gb|AY106811.1| Zea mays PCO109530 mRNA sequence
          Length = 1545

 Score =  180 bits (91), Expect = 1e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                       
Query: 55  tctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagtcaa 114
           |||||||||||||| |||||||||||||||| ||||| || || || || || |||||||
Sbjct: 214 tctccaccgcgaaatctgttgcttcccctgggcgtggtattctggcaattgatgagtcaa 273

                                                                       
Query: 115 gtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaaccgcc 174
            |||||||||||||||||| ||  |||||||||||||||||||||| ||||| |||||||
Sbjct: 274 atgcaacatgtggaaagaggttatcatctattggtttggacaacacagaagtgaaccgcc 333

                                          
Query: 175 aggcttacaggcagcttttgctgaccactgc 205
           ||||||||||||||||||||||||| |||||
Sbjct: 334 aggcttacaggcagcttttgctgacaactgc 364
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>ref|NM_184115.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1421

 Score =  178 bits (90), Expect = 4e-42
 Identities = 138/154 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 111
           ||||||||||||||||| ||||||||||||| || ||||| ||||| || || || ||||
Sbjct: 199 tcgtctccaccgcgaaatctgttgcttccccagggcgtggtatcctggcaattgatgagt 258

                                                                       
Query: 112 caagtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaacc 171
           | | ||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 259 cgaatgccacatgcggaaagagattagcatccattggtttggacaacacagaagttaacc 318

                                             
Query: 172 gccaggcttacaggcagcttttgctgaccactgc 205
           |||||||||||||||||||||| |||||||||||
Sbjct: 319 gccaggcttacaggcagcttttactgaccactgc 352
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>dbj|AK099387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075H15, full
           insert sequence
          Length = 1477

 Score =  178 bits (90), Expect = 4e-42
 Identities = 138/154 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 111
           ||||||||||||||||| ||||||||||||| || ||||| ||||| || || || ||||
Sbjct: 198 tcgtctccaccgcgaaatctgttgcttccccagggcgtggtatcctggcaattgatgagt 257

                                                                       
Query: 112 caagtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaacc 171
           | | ||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 258 cgaatgccacatgcggaaagagattagcatccattggtttggacaacacagaagttaacc 317

                                             
Query: 172 gccaggcttacaggcagcttttgctgaccactgc 205
           |||||||||||||||||||||| |||||||||||
Sbjct: 318 gccaggcttacaggcagcttttactgaccactgc 351
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>dbj|AK059097.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C06, full
           insert sequence
          Length = 1421

 Score =  178 bits (90), Expect = 4e-42
 Identities = 138/154 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 111
           ||||||||||||||||| ||||||||||||| || ||||| ||||| || || || ||||
Sbjct: 199 tcgtctccaccgcgaaatctgttgcttccccagggcgtggtatcctggcaattgatgagt 258

                                                                       
Query: 112 caagtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaacc 171
           | | ||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 259 cgaatgccacatgcggaaagagattagcatccattggtttggacaacacagaagttaacc 318

                                             
Query: 172 gccaggcttacaggcagcttttgctgaccactgc 205
           |||||||||||||||||||||| |||||||||||
Sbjct: 319 gccaggcttacaggcagcttttactgaccactgc 352
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>dbj|D10419.1|RICT25 Oryza sativa mRNA for aldolase (T25 gene), partial sequence
          Length = 331

 Score =  163 bits (82), Expect = 3e-37
 Identities = 137/154 (88%), Gaps = 1/154 (0%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcgtctccaccgcgaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagt 111
           ||||||||||||||||| ||||||||||||| || ||||| ||||| || || || ||||
Sbjct: 3   tcgtctccaccgcgaaatctgttgcttccccagggcgtggtatcctggcaattgatgagt 62

                                                                       
Query: 112 caagtgcaacatgtggaaagagattggcatctattggtttggacaacacggaagttaacc 171
           | | ||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 63  cgaatgccacatgcggaaagagattagcatccattggtttggacaacacagaagttaacc 122

                                             
Query: 172 gccaggcttacaggcagcttttgctgaccactgc 205
           |||| ||||||||||||||||| |||||||||||
Sbjct: 123 gcca-gcttacaggcagcttttactgaccactgc 155
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 3e-34
 Identities = 125/141 (88%)
 Strand = Plus / Plus

                                                                           
Query: 65      gaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagtcaagtgcaacatg 124
               |||| ||||||||||||| || ||||| ||||| || || || ||||| | ||| |||||
Sbjct: 1016439 gaaatctgttgcttccccagggcgtggtatcctggcaattgatgagtcgaatgccacatg 1016498

                                                                           
Query: 125     tggaaagagattggcatctattggtttggacaacacggaagttaaccgccaggcttacag 184
                ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1016499 cggaaagagattagcatccattggtttggacaacacagaagttaaccgccaggcttacag 1016558

                                    
Query: 185     gcagcttttgctgaccactgc 205
               ||||||||| |||||||||||
Sbjct: 1016559 gcagcttttactgaccactgc 1016579
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score =  153 bits (77), Expect = 3e-34
 Identities = 125/141 (88%)
 Strand = Plus / Plus

                                                                         
Query: 65    gaaaactgttgcttcccctggccgtgggatccttgcgatcgacgagtcaagtgcaacatg 124
             |||| ||||||||||||| || ||||| ||||| || || || ||||| | ||| |||||
Sbjct: 54107 gaaatctgttgcttccccagggcgtggtatcctggcaattgatgagtcgaatgccacatg 54166

                                                                         
Query: 125   tggaaagagattggcatctattggtttggacaacacggaagttaaccgccaggcttacag 184
              ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 54167 cggaaagagattagcatccattggtttggacaacacagaagttaaccgccaggcttacag 54226

                                  
Query: 185   gcagcttttgctgaccactgc 205
             ||||||||| |||||||||||
Sbjct: 54227 gcagcttttactgaccactgc 54247
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>emb|Y10380.1|STPLASALD Solanum tuberosum partial mRNA for protein homologous to plastidic
           aldolase
          Length = 1260

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 123 tgtggaaagagattggcatctattggtttggacaacacggaagttaaccgccaggcttac 182
           ||||||||| | ||||| || ||||||||||| ||||| || | ||||||||| ||||||
Sbjct: 114 tgtggaaagcgtttggcttccattggtttggaaaacactgaggctaaccgccaagcttac 173
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>gb|AC103576.8| Rattus norvegicus 12 BAC CH230-63N13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 219287

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 184    ggcagcttttgctgaccactgc 205
              ||||||||||||||||||||||
Sbjct: 200628 ggcagcttttgctgaccactgc 200649
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>gb|AC000091.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 91c In DGCR Region,
             complete sequence
          Length = 44928

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 4     cagcccgcccgccgcgcctcgctcg 28
             |||||||||||||||| ||||||||
Sbjct: 21180 cagcccgcccgccgcggctcgctcg 21156
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>gb|AC122869.4| Mus musculus BAC clone RP23-101O19 from chromosome 7, complete sequence
          Length = 198531

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 73674 gcaacatgtggaaagagatt 73693
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>gb|AC127227.3| Mus musculus BAC clone RP24-505M10 from chromosome 7, complete sequence
          Length = 151643

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    gcaacatgtggaaagagatt 136
              ||||||||||||||||||||
Sbjct: 126899 gcaacatgtggaaagagatt 126918
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>gb|BT012701.1| Lycopersicon esculentum clone 113575F, mRNA sequence
          Length = 1419

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 60  accgcgaaaactgttgcttcccctggccgtgg 91
           ||||||||||||||||| || ||||| |||||
Sbjct: 198 accgcgaaaactgttgcatctcctggtcgtgg 229
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>gb|BT012696.1| Lycopersicon esculentum clone 113566F, mRNA sequence
          Length = 1359

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 60  accgcgaaaactgttgcttcccctggccgtgg 91
           |||||||||||| |||| |||||||| |||||
Sbjct: 219 accgcgaaaactattgcatcccctggtcgtgg 250
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>gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosome 7, complete sequence
          Length = 196173

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gcaacatgtggaaagagatt 136
              ||||||||||||||||||||
Sbjct: 116866 gcaacatgtggaaagagatt 116847
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>gb|AC154905.5| Mus musculus BAC clone RP23-369A18 from chromosome 7, complete sequence
          Length = 213905

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 19993 gcaacatgtggaaagagatt 20012
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>gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome 7, complete sequence
          Length = 176364

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 79251 gcaacatgtggaaagagatt 79232
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>gb|AC128701.3| Mus musculus BAC clone RP24-131M3 from chromosome 7, complete sequence
          Length = 140722

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 82747 gcaacatgtggaaagagatt 82728
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>gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7, complete sequence
          Length = 182230

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gcaacatgtggaaagagatt 136
              ||||||||||||||||||||
Sbjct: 167170 gcaacatgtggaaagagatt 167151
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      tcgtccgcgtccgcgcctcc 45
               ||||||||||||||||||||
Sbjct: 1329962 tcgtccgcgtccgcgcctcc 1329943
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>gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosome 7, complete sequence
          Length = 211722

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 89129 gcaacatgtggaaagagatt 89110
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>gb|AC157592.6| Mus musculus BAC clone RP23-331M13 from chromosome 7, complete
            sequence
          Length = 220809

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  gcaacatgtggaaagagatt 136
            ||||||||||||||||||||
Sbjct: 3462 gcaacatgtggaaagagatt 3443
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>gb|AC172367.1| Mus musculus BAC clone RP23-342N5 from chromosome 7, complete sequence
          Length = 178231

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 88866 gcaacatgtggaaagagatt 88885
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>gb|AC171682.2| Mus musculus BAC clone RP24-101E7 from chromosome 7, complete sequence
          Length = 228837

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 68914 gcaacatgtggaaagagatt 68895
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>gb|AC170803.2| Mus musculus BAC clone RP24-418J23 from chromosome 7, complete sequence
          Length = 208499

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 11584 gcaacatgtggaaagagatt 11603
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>gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosome 7, complete sequence
          Length = 228024

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    gcaacatgtggaaagagatt 136
              ||||||||||||||||||||
Sbjct: 123474 gcaacatgtggaaagagatt 123493
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>gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosome 7, complete sequence
          Length = 226303

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gcaacatgtggaaagagatt 136
              ||||||||||||||||||||
Sbjct: 163634 gcaacatgtggaaagagatt 163615
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>gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome 7, complete sequence
          Length = 223232

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcaacatgtggaaagagatt 136
             ||||||||||||||||||||
Sbjct: 78757 gcaacatgtggaaagagatt 78776
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>dbj|AB027002.1| Nicotiana paniculata mRNA for plastidic aldolase, complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 135 ttggcatctattggtttggacaacacggaagttaaccgccaggcttac 182
           ||||| || ||||||||||| ||||| || | ||||||||| ||||||
Sbjct: 290 ttggcttccattggtttggaaaacactgaggctaaccgccaagcttac 337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,256,295
Number of Sequences: 3902068
Number of extensions: 1256295
Number of successful extensions: 108379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108091
Number of HSP's gapped (non-prelim): 287
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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