Clone Name | bart31a09 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccacctcggcgacgccgccgcc 159 |||||||||||||||||||||| Sbjct: 2430942 ccacctcggcgacgccgccgcc 2430921
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccacctcggcgacgccgccgcc 159 |||||||||||||||||||||| Sbjct: 3646088 ccacctcggcgacgccgccgcc 3646067
>emb|X57858.1|CFCENC Cellulomonas fimi cenC gene for endo-1,4-beta-glucan glucanohydrolase Length = 3306 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 138 ccacctcggcgacgccgccgcc 159 |||||||||||||||||||||| Sbjct: 971 ccacctcggcgacgccgccgcc 992
>ref|XM_541520.2| PREDICTED: Canis familiaris similar to Glutamate [NMDA] receptor subunit epsilon 4 precursor (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (LOC484405), mRNA Length = 3609 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 gcgctcgctgtccccgcccgccgcgc 212 |||| ||||||||||||||||||||| Sbjct: 2568 gcgcccgctgtccccgcccgccgcgc 2593
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccacctcggcgacgccgccgcc 159 |||||||||||||||||||||| Sbjct: 3388796 ccacctcggcgacgccgccgcc 3388775
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 138 ccacctcggcgacgccgccgcc 159 |||||||||||||||||||||| Sbjct: 1459846 ccacctcggcgacgccgccgcc 1459867
>gb|AF542531.2| Cryptococcus neoformans var. neoformans strain JEC21 mating type alpha locus, complete sequence Length = 133474 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cctgcccgccttgttggtcgt 422 ||||||||||||||||||||| Sbjct: 24696 cctgcccgccttgttggtcgt 24676
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cctgcccgccttgttggtcgt 422 ||||||||||||||||||||| Sbjct: 1624618 cctgcccgccttgttggtcgt 1624638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 cacctcccacctcggcgacgccgcc 156 ||||||||||||||||| ||||||| Sbjct: 19645599 cacctcccacctcggcgccgccgcc 19645623
>ref|XM_570538.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND05920) partial mRNA Length = 4569 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cctgcccgccttgttggtcgt 422 ||||||||||||||||||||| Sbjct: 3646 cctgcccgccttgttggtcgt 3626
>gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, complete sequence Length = 163317 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 184 cccgcgctcgctgtccccgcccgccgcgc 212 ||||||| |||| |||||||||||||||| Sbjct: 38364 cccgcgcccgctctccccgcccgccgcgc 38336
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 ctcccacctcggcgacgccgccgcc 159 |||||||| |||||||||||||||| Sbjct: 18826545 ctcccaccacggcgacgccgccgcc 18826521
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 cacctcccacctcggcgacgccgcc 156 ||||||||||||||||| ||||||| Sbjct: 19638626 cacctcccacctcggcgccgccgcc 19638650
>dbj|AK120576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C24, full insert sequence Length = 2233 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 ctcccacctcggcgacgccgccgcc 159 |||||||| |||||||||||||||| Sbjct: 1377 ctcccaccacggcgacgccgccgcc 1401
>dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D01, full insert sequence Length = 2836 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 ctcccacctcggcgacgccgccgcc 159 |||||||| |||||||||||||||| Sbjct: 376 ctcccaccacggcgacgccgccgcc 400
>gb|AC091234.7| Oryza sativa chromosome 3 BAC OSJNBa0057E11 genomic sequence, complete sequence Length = 138716 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 cacctcccacctcggcgacgccgcc 156 ||||||||||||||||| ||||||| Sbjct: 30160 cacctcccacctcggcgccgccgcc 30136
>dbj|AP002986.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-121M22, complete sequence Length = 157963 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 agaaatgtgcagcagcacaca 77 ||||||||||||||||||||| Sbjct: 51175 agaaatgtgcagcagcacaca 51155
>ref|XM_466795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ccgccgcgcagaccaccacc 223 |||||||||||||||||||| Sbjct: 116 ccgccgcgcagaccaccacc 135
>gb|BT016613.1| Zea mays clone Contig446 mRNA sequence Length = 1233 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 439 cttcgcaatggggggctcctcggtgtgcgacgggactctgtctc 482 |||||| ||||| |||||| | || || |||||||||||||||| Sbjct: 273 cttcgcgatgggaggctcccctgtatgggacgggactctgtctc 316
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 caacgcctcggcgaaggcgt 512 |||||||||||||||||||| Sbjct: 4135039 caacgcctcggcgaaggcgt 4135058
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 cgagttcaacgcctcggcga 506 |||||||||||||||||||| Sbjct: 438862 cgagttcaacgcctcggcga 438843
>gb|AY277973.1| Takifugu rubripes transcription factor Sox5 (Sox5) gene, complete cds Length = 61929 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 497 gcctcggcgaaggcgttggtcacc 520 |||||||||||||| ||||||||| Sbjct: 54593 gcctcggcgaaggccttggtcacc 54570
>gb|AC182459.3| Pan troglodytes BAC clone CH251-706C19 from chromosome 4, complete sequence Length = 166951 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctcacccgccgcacccccgt 378 |||||||||||||||||||| Sbjct: 78614 ctcacccgccgcacccccgt 78595 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctcacccgccgcacccccgt 378 |||||||||||||||||||| Sbjct: 50451 ctcacccgccgcacccccgt 50432 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctcacccgccgcacccccgt 378 |||||||||||||||||||| Sbjct: 42533 ctcacccgccgcacccccgt 42514
>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence Length = 206515 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cgcgctcgctgtccccgccc 205 |||||||||||||||||||| Sbjct: 154867 cgcgctcgctgtccccgccc 154848
>gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, complete sequence Length = 188518 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cgcgctcgctgtccccgccc 205 |||||||||||||||||||| Sbjct: 145594 cgcgctcgctgtccccgccc 145613
>gb|AC073137.7| Homo sapiens BAC clone RP11-703P11 from 7, complete sequence Length = 168637 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttatcagggtttcttttaga 59 |||||||||||||||||||| Sbjct: 122353 ttatcagggtttcttttaga 122334
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 cgggatcgatgtcgacaacg 548 |||||||||||||||||||| Sbjct: 3680318 cgggatcgatgtcgacaacg 3680299
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tcgagaaggaccccgagcac 262 |||||||||||||||||||| Sbjct: 2941524 tcgagaaggaccccgagcac 2941505
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 caacgcctcggcgaaggcgt 512 |||||||||||||||||||| Sbjct: 325608 caacgcctcggcgaaggcgt 325627
>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14 Length = 278492 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 caacgcctcggcgaaggcgt 512 |||||||||||||||||||| Sbjct: 13132 caacgcctcggcgaaggcgt 13151
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 gggatccctgcccgccttgttggt 419 ||||||||||||||||||| |||| Sbjct: 778889 gggatccctgcccgccttggtggt 778866
>dbj|AK052812.1| Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730024H21 product:unclassifiable, full insert sequence Length = 947 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cgcgctcgctgtccccgccc 205 |||||||||||||||||||| Sbjct: 464 cgcgctcgctgtccccgccc 483
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgccgcgcagaccaccacc 223 |||||||||||||||||||| Sbjct: 24717726 ccgccgcgcagaccaccacc 24717707
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tcgccgacgagccgacgctg 128 |||||||||||||||||||| Sbjct: 2478936 tcgccgacgagccgacgctg 2478955
>emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in linkage group 4, complete sequence Length = 211817 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttatcagggtttcttttag 58 |||||||||||||||||||| Sbjct: 126950 tttatcagggtttcttttag 126969
>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence Length = 160029 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tttagaaatgtgcagcagca 73 |||||||||||||||||||| Sbjct: 112056 tttagaaatgtgcagcagca 112037
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1372_D06 Length = 129242 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgccgcgcagaccaccacc 223 |||||||||||||||||||| Sbjct: 99124 ccgccgcgcagaccaccacc 99105
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgccgcgcagaccaccacc 223 |||||||||||||||||||| Sbjct: 17374 ccgccgcgcagaccaccacc 17355
>emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in linkage group 4, complete sequence Length = 228177 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tttatcagggtttcttttag 58 |||||||||||||||||||| Sbjct: 84846 tttatcagggtttcttttag 84827
>emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, complete sequence Length = 78340 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaatgtgcagcagcacacat 78 |||||||||||||||||||| Sbjct: 67787 aaatgtgcagcagcacacat 67768
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 ccgacacctcacccgccgca 371 |||||||||||||||||||| Sbjct: 912594 ccgacacctcacccgccgca 912575
>gb|AF007800.1|AF007800 Pseudomonas fluorescens mannitol operon, MtlE (mtlE), MtlF (mtlF), MtlG (mtlG), MtlK (mtlK), mannitol dehydrogenase (mtlD), xylulose kinase (mtlY) and fructokinase (mtlZ) genes, complete cds Length = 10031 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ccgccgcgcagaccaccacc 223 |||||||||||||||||||| Sbjct: 2187 ccgccgcgcagaccaccacc 2206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,176,915 Number of Sequences: 3902068 Number of extensions: 4176915 Number of successful extensions: 87861 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86276 Number of HSP's gapped (non-prelim): 1585 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)