ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart31a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 192 aacgaggcgctcaagaggggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 251 ||||||||| ||||| |||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 4475539 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 4475480 Query: 252 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 311 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 4475479 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 4475420 Query: 312 gtcgtagaggccgccgtc 329 ||||| |||||| ||||| Sbjct: 4475419 gtcgtcgaggccaccgtc 4475402 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 407 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcgg 466 ||||||||| | |||||| || || || |||||| | |||||| ||||| || |||||| Sbjct: 4475321 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 4475262 Query: 467 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 526 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 4475261 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 4475202 Query: 527 cttcctctccacgtgggccagcgcggt 553 |||| || || ||||||| | |||||| Sbjct: 4475201 cttcttcaccgcgtgggcgaccgcggt 4475175 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 15105556 gccgccgtccccgtcgacctg 15105576
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 192 aacgaggcgctcaagaggggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 251 ||||||||| ||||| |||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 4475654 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 4475595 Query: 252 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 311 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 4475594 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 4475535 Query: 312 gtcgtagaggccgccgtc 329 ||||| |||||| ||||| Sbjct: 4475534 gtcgtcgaggccaccgtc 4475517 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 407 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcgg 466 ||||||||| | |||||| || || || |||||| | |||||| ||||| || |||||| Sbjct: 4475436 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 4475377 Query: 467 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 526 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 4475376 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 4475317 Query: 527 cttcctctccacgtgggccagcgcggt 553 |||| || || ||||||| | |||||| Sbjct: 4475316 cttcttcaccgcgtgggcgaccgcggt 4475290 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 15100090 gccgccgtccccgtcgacctg 15100110
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 192 aacgaggcgctcaagaggggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 251 ||||||||| ||||| |||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 80831 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 80772 Query: 252 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 311 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 80771 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 80712 Query: 312 gtcgtagaggccgccgtc 329 ||||| |||||| ||||| Sbjct: 80711 gtcgtcgaggccaccgtc 80694 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 407 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcgg 466 ||||||||| | |||||| || || || |||||| | |||||| ||||| || |||||| Sbjct: 80613 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 80554 Query: 467 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 526 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 80553 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 80494 Query: 527 cttcctctccacgtgggccagcgcggt 553 |||| || || ||||||| | |||||| Sbjct: 80493 cttcttcaccgcgtgggcgaccgcggt 80467
>dbj|AK108939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B05, full insert sequence Length = 1965 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 192 aacgaggcgctcaagaggggcctgcgcagggccgtcgcggtgtacccgcacctggccgga 251 ||||||||| ||||| |||||| | |||||||||||||| |||||| ||||| ||||| Sbjct: 182 aacgaggcgatcaaggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggc 241 Query: 252 cgcttcgccgtcgaccaccggggcaggcgttgcatccacgtcaacaacgagggcgtgctt 311 ||| ||||||||||||||| ||| | || | | ||||||| ||| || |||||||||| Sbjct: 242 cgcctcgccgtcgaccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctc 301 Query: 312 gtcgtagaggccgccgtc 329 ||||| |||||| ||||| Sbjct: 302 gtcgtcgaggccaccgtc 319 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 407 gccggaggagatcgtcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcgg 466 ||||||||| | |||||| || || || |||||| | |||||| ||||| || |||||| Sbjct: 400 gccggaggacaacgtcggcgccgcgctgctgcaggtgaagctcgtccggtacaggtgcgg 459 Query: 467 cggcctcgtgatcggcttcagcagccaccaccaggccgccgacggctactccgttagcac 526 ||||||||| ||||| || | |||||||||| ||||||||||| ||||| | ||| | Sbjct: 460 cggcctcgtcgtcggcagcatctgccaccaccacaccgccgacggccactccatgagcgc 519 Query: 527 cttcctctccacgtgggccagcgcggt 553 |||| || || ||||||| | |||||| Sbjct: 520 cttcttcaccgcgtgggcgaccgcggt 546
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 101 cggcgagatggtcccgctgaccctcttcgaccgcgcc 137 |||||||||||||||||| ||| |||||||||||||| Sbjct: 121215 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 121179 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 489 agccaccaccaggccgccgacggc 512 ||||||||||||| |||||||||| Sbjct: 120431 agccaccaccaggtcgccgacggc 120408
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 101 cggcgagatggtcccgctgaccctcttcgaccgcgcc 137 |||||||||||||||||| ||| |||||||||||||| Sbjct: 11667280 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 11667244 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 489 agccaccaccaggccgccgacggc 512 ||||||||||||| |||||||||| Sbjct: 11666496 agccaccaccaggtcgccgacggc 11666473
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 101 cggcgagatggtcccgctgaccctcttcgaccgcgcc 137 |||||||||||||||||| ||| |||||||||||||| Sbjct: 11673720 cggcgagatggtcccgctcaccgtcttcgaccgcgcc 11673684 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 489 agccaccaccaggccgccgacggc 512 ||||||||||||| |||||||||| Sbjct: 11672936 agccaccaccaggtcgccgacggc 11672913
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 84 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 143 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 122859 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 122918 Query: 144 gacatcttcgtccccat 160 ||| ||||||||||||| Sbjct: 122919 gacgtcttcgtccccat 122935 Score = 50.1 bits (25), Expect = 0.009 Identities = 106/133 (79%) Strand = Plus / Minus Query: 421 tcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcggcggcctcgtgatcg 480 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 88904 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 88845 Query: 481 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 540 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 88844 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 88785 Query: 541 gggccagcgcggt 553 |||| || ||||| Sbjct: 88784 gggcgagggcggt 88772 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Minus Query: 97 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 156 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 125168 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 125109 Query: 157 ccat 160 |||| Sbjct: 125108 ccat 125105 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 288 cacgtcaacaacgagggcgtgct 310 ||||||||||||||||||||||| Sbjct: 89019 cacgtcaacaacgagggcgtgct 88997 Score = 44.1 bits (22), Expect = 0.52 Identities = 61/74 (82%) Strand = Plus / Minus Query: 85 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 144 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 89234 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 89175 Query: 145 acatcttcgtcccc 158 || ||||||||||| Sbjct: 89174 acgtcttcgtcccc 89161
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 84 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 143 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 24645957 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 24646016 Query: 144 gacatcttcgtccccat 160 ||| ||||||||||||| Sbjct: 24646017 gacgtcttcgtccccat 24646033 Score = 50.1 bits (25), Expect = 0.009 Identities = 106/133 (79%) Strand = Plus / Minus Query: 421 tcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcggcggcctcgtgatcg 480 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 24612002 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 24611943 Query: 481 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 540 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 24611942 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 24611883 Query: 541 gggccagcgcggt 553 |||| || ||||| Sbjct: 24611882 gggcgagggcggt 24611870 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Minus Query: 97 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 156 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 24648266 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 24648207 Query: 157 ccat 160 |||| Sbjct: 24648206 ccat 24648203 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 288 cacgtcaacaacgagggcgtgct 310 ||||||||||||||||||||||| Sbjct: 24612117 cacgtcaacaacgagggcgtgct 24612095 Score = 44.1 bits (22), Expect = 0.52 Identities = 61/74 (82%) Strand = Plus / Minus Query: 85 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 144 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 24612332 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 24612273 Query: 145 acatcttcgtcccc 158 || ||||||||||| Sbjct: 24612272 acgtcttcgtcccc 24612259
>dbj|AK061327.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H12, full insert sequence Length = 1584 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 84 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 143 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 85 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 144 Query: 144 gacatcttcgtccccat 160 ||| ||||||||||||| Sbjct: 145 gacgtcttcgtccccat 161
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 84 acgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttg 143 ||||||||||| |||||||||||| ||| || || ||| ||| |||||||| |||| Sbjct: 24957627 acgccgcacccgctcgccggcgagaaggttcccctcaccgcctttgaccgcgcggccttc 24957686 Query: 144 gacatcttcgtccccat 160 ||| ||||||||||||| Sbjct: 24957687 gacgtcttcgtccccat 24957703 Score = 50.1 bits (25), Expect = 0.009 Identities = 106/133 (79%) Strand = Plus / Minus Query: 421 tcggggcggctcttctgcagatcaagctcaaccggtgcaagtgcggcggcctcgtgatcg 480 |||||||||| ||||||||| | |||||| ||| | | ||||||||||||||| ||| Sbjct: 24923672 tcggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcg 24923613 Query: 481 gcttcagcagccaccaccaggccgccgacggctactccgttagcaccttcctctccacgt 540 || ||| | |||||||||| | | |||||| ||||| | ||||||||| | |||||| Sbjct: 24923612 gcctcatcggccaccaccacgtcttcgacggacactccatgagcaccttctgcgccacgt 24923553 Query: 541 gggccagcgcggt 553 |||| || ||||| Sbjct: 24923552 gggcgagggcggt 24923540 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Minus Query: 97 tcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttggacatcttcgtcc 156 |||||||||||| |||||| || || |||| ||||||| |||| ||||||||||||| Sbjct: 24959936 tcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatcttcgtcc 24959877 Query: 157 ccat 160 |||| Sbjct: 24959876 ccat 24959873 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 288 cacgtcaacaacgagggcgtgct 310 ||||||||||||||||||||||| Sbjct: 24923787 cacgtcaacaacgagggcgtgct 24923765 Score = 44.1 bits (22), Expect = 0.52 Identities = 61/74 (82%) Strand = Plus / Minus Query: 85 cgccgcaccctgtcgccggcgagatggtcccgctgaccctcttcgaccgcgccaccttgg 144 |||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct: 24924002 cgccgcacccgctcgccggcgagaaggttcccctctccgccttcgaccgcgcggccttcg 24923943 Query: 145 acatcttcgtcccc 158 || ||||||||||| Sbjct: 24923942 acgtcttcgtcccc 24923929
>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence Length = 190130 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 325 ccgtccccgtcgacctggcgagcgtggtgac 355 |||||||||||| |||||||| ||||||||| Sbjct: 52400 ccgtccccgtcgccctggcgaccgtggtgac 52430
>emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chromosome 1 Contains the 3' end of the SNX27 gene for sorting nexin family member 27, the TNRC4 gene for trinucleotide repeat containing 4, five novel genes, a ribosomal protein S11 (RPS11) pseudogene, the MRPL9 gene for mitochondrial ribosomal protein L9, the OAZ3 gene for ornithine decarboxylase antizyme 3, a novel gene (FLJ36032) the TDRKH gene for tudor and KH domain containing, the RORC gene for RAR-related orphan receptor C and four CpG islands, complete sequence Length = 163389 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 325 ccgtccccgtcgacctggcgagcgtggtgac 355 |||||||||||| |||||||| ||||||||| Sbjct: 32774 ccgtccccgtcgccctggcgaccgtggtgac 32804
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 492 caccaccaggccgccgacggctactccgttagcaccttc 530 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 1713200 caccaccaggccgccgacgggttctccatgagcaccttc 1713162
>dbj|AK109609.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F12, full insert sequence Length = 1530 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 492 caccaccaggccgccgacggctactccgttagcaccttc 530 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 485 caccaccaggccgccgacgggttctccatgagcaccttc 523
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 492 caccaccaggccgccgacggctactccgttagcaccttc 530 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 1713176 caccaccaggccgccgacgggttctccatgagcaccttc 1713138
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 492 caccaccaggccgccgacggctactccgttagcaccttc 530 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 127284 caccaccaggccgccgacgggttctccatgagcaccttc 127322
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 492 caccaccaggccgccgacggctactccgttagcaccttc 530 |||||||||||||||||||| | |||| | ||||||||| Sbjct: 53721 caccaccaggccgccgacgggttctccatgagcaccttc 53759
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 292 tcaacaacgagggcgtgcttgt 313 |||||||||||||||||||||| Sbjct: 1131766 tcaacaacgagggcgtgcttgt 1131787 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 tcaacaacgagggcgtgcttgt 313 |||||||||||||||||||||| Sbjct: 1128231 tcaacaacgagggcgtgcttgt 1128210
>gb|AC159450.1| Trypanosoma brucei chromosome 7 clone RPCI93-5F10, complete sequence Length = 154291 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 292 tcaacaacgagggcgtgcttgt 313 |||||||||||||||||||||| Sbjct: 42259 tcaacaacgagggcgtgcttgt 42280 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 tcaacaacgagggcgtgcttgt 313 |||||||||||||||||||||| Sbjct: 38724 tcaacaacgagggcgtgcttgt 38703
>gb|AC133978.2| Rattus norvegicus 2 BAC CH230-10K1 (Children's Hospital Oakland Research Institute) complete sequence Length = 213704 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 325 ccgtccccgtcgacctggcgagcgtggtga 354 |||||||||||| |||||||| |||||||| Sbjct: 106181 ccgtccccgtcgccctggcgaccgtggtga 106210
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 491 ccaccaccaggccgccgacggc 512 |||||||||||||||||||||| Sbjct: 3053836 ccaccaccaggccgccgacggc 3053815
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 gccaccaccaggccgccgacg 510 ||||||||||||||||||||| Sbjct: 3098604 gccaccaccaggccgccgacg 3098584
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 gcagccaccaccaggccgccg 507 ||||||||||||||||||||| Sbjct: 3641272 gcagccaccaccaggccgccg 3641252
>dbj|AB097436.1| Oryza sativa (japonica cultivar-group) transposon AnacA9 DNA, complete sequence Length = 1758 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 ggcgagcgtggtgaccgacgg 361 ||||||||||||||||||||| Sbjct: 1256 ggcgagcgtggtgaccgacgg 1236
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 49217 gccgccgtccccgtcgacctg 49197
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 13780844 gccgccgtccccgtcgacctg 13780864
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 ggcgagcgtggtgaccgacgg 361 ||||||||||||||||||||| Sbjct: 39755584 ggcgagcgtggtgaccgacgg 39755564 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gggccagcgcggtacggcaa 560 |||||||||||||||||||| Sbjct: 38662557 gggccagcgcggtacggcaa 38662538
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 ggcgagcgtggtgaccgacgg 361 ||||||||||||||||||||| Sbjct: 106483 ggcgagcgtggtgaccgacgg 106463
>gb|AF111709.1|AF111709 Oryza sativa subsp. indica Retrosat 1 retrotransposon and Ty3-Gypsy type Retrosat 2 retrotransposon, complete sequences; and unknown genes Length = 52684 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 2373 gccgccgtccccgtcgacctg 2393
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gccgccgtccccgtcgacctg 341 ||||||||||||||||||||| Sbjct: 175452 gccgccgtccccgtcgacctg 175472
>ref|XM_533899.2| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 1 (LOC476694), mRNA Length = 1896 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ctgcagtgccgccgccggaggaga 417 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>ref|XM_862227.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 5 (LOC476694), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ctgcagtgccgccgccggaggaga 417 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>ref|XM_862217.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 4 (LOC476694), mRNA Length = 1850 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ctgcagtgccgccgccggaggaga 417 |||||| ||||||||||||||||| Sbjct: 8 ctgcagagccgccgccggaggaga 31
>ref|XM_862209.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 3 (LOC476694), mRNA Length = 1908 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ctgcagtgccgccgccggaggaga 417 |||||| ||||||||||||||||| Sbjct: 3 ctgcagagccgccgccggaggaga 26
>ref|XM_848300.1| PREDICTED: Canis familiaris similar to calreticulin, transcript variant 2 (LOC476694), mRNA Length = 1908 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 ctgcagtgccgccgccggaggaga 417 |||||| ||||||||||||||||| Sbjct: 9 ctgcagagccgccgccggaggaga 32
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 gcggcggcctcgtgatcggc 482 |||||||||||||||||||| Sbjct: 2901767 gcggcggcctcgtgatcggc 2901748
>ref|XM_501760.1| Yarrowia lipolytica CLIB122, YALI0C12430g predicted mRNA Length = 1884 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ggctcttctgcagatcaagctcaa 451 ||||||| |||||||||||||||| Sbjct: 1324 ggctcttttgcagatcaagctcaa 1301
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 tcgacctggcgagcgtggtg 353 |||||||||||||||||||| Sbjct: 55923 tcgacctggcgagcgtggtg 55942
>gb|AC091096.7| Homo sapiens chromosome 8, clone RP11-587H10, complete sequence Length = 207630 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 ccaccttggacatcttcgtcccca 159 ||||||||||||||| |||||||| Sbjct: 161689 ccaccttggacatctacgtcccca 161712
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtgccgccgccggaggagat 418 |||||||||||||||||||| Sbjct: 4809810 gtgccgccgccggaggagat 4809829 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gtgccgccgccggaggagat 418 |||||||||||||||||||| Sbjct: 244132 gtgccgccgccggaggagat 244113
>gb|AC022193.5|AC022193 Homo sapiens, clone RP11-23B3, complete sequence Length = 184228 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ccaccttggacatcttcgtcccca 159 ||||||||||||||| |||||||| Sbjct: 130356 ccaccttggacatctacgtcccca 130333
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ggcgagcagcaccatgctga 69 |||||||||||||||||||| Sbjct: 4240653 ggcgagcagcaccatgctga 4240634
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gggccagcgcggtacggcaa 560 |||||||||||||||||||| Sbjct: 120530 gggccagcgcggtacggcaa 120511
>emb|AJ322904.1|HSA322904 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OB1R Length = 791 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ggccgccgtccccgtcgacc 339 |||||||||||||||||||| Sbjct: 102 ggccgccgtccccgtcgacc 83
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gcatccacgtcaacaacgag 302 |||||||||||||||||||| Sbjct: 4808786 gcatccacgtcaacaacgag 4808767
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tcgtgatcggcttcagcagc 491 |||||||||||||||||||| Sbjct: 808285 tcgtgatcggcttcagcagc 808304
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 ggctcttctgcagatcaagctcaa 451 ||||||| |||||||||||||||| Sbjct: 1738602 ggctcttttgcagatcaagctcaa 1738625
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgcaccctgtcgccggcgag 107 |||||||||||||||||||| Sbjct: 260221 cgcaccctgtcgccggcgag 260202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,374,672 Number of Sequences: 3902068 Number of extensions: 3374672 Number of successful extensions: 67312 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65124 Number of HSP's gapped (non-prelim): 2185 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
