Clone Information

BLAST Search Result

Clone Name	bart31a01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	31	1.1
2	LCMT1_CRYNE (Q5KLL9) Leucine carboxyl methyltransferase 1 (EC 2....	31	1.5
3	TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box prote...	30	1.9
4	IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2	30	1.9
5	HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)	30	3.3
6	CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor	29	4.3
7	EMID2_MOUSE (Q91VF6) Collagen alpha-1(XXVI) chain precursor (EMI...	29	5.7
8	FBS1_HUMAN (P62706) Fibrosin-1	29	5.7
9	CF047_HUMAN (O95873) Protein C6orf47 (Protein G4)	29	5.7
10	TINAL_RAT (Q9EQT5) Tubulointerstitial nephritis antigen-like pre...	29	5.7
11	HXA13_MOUSE (Q62424) Homeobox protein Hox-A13 (Hox-1.10)	29	5.7
12	ENC_DROME (Q8MSX1) Protein encore	29	5.7
13	YPE1_RHORU (P23138) Hypothetical 28 kDa protein in petA 5'region	29	5.7
14	TINAL_MOUSE (Q99JR5) Tubulointerstitial nephritis antigen-like p...	29	5.7
15	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	29	5.7
16	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	5.7
17	CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displace...	29	5.7
18	AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7...	28	7.4
19	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	28	7.4
20	FIBP_ADE12 (P36711) Fiber protein (pIV)	28	7.4
21	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	28	7.4
22	ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)	28	7.4
23	DNAE2_RHOBA (Q7UXK9) Error-prone DNA polymerase (EC 2.7.7.7)	28	7.4
24	POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glyco...	28	9.7
25	Y4632_RHILO (Q98DM9) Hypothetical UPF0011 protein mlr4632	28	9.7
26	VPAP_EHV1V (P84399) DNA polymerase processivity factor (Polymera...	28	9.7
27	VPAP_EHV1D (P36322) DNA polymerase processivity factor (Polymera...	28	9.7
28	VPAP_EHV1B (P28958) DNA polymerase processivity factor (Polymera...	28	9.7
29	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	28	9.7
30	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	28	9.7
31	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	28	9.7
32	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	28	9.7
33	IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2	28	9.7
34	EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (...	28	9.7
35	CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog	28	9.7
36	ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1	28	9.7
37	FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related p...	28	9.7
38	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	28	9.7
39	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	9.7

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = -2

Query: 399  RVPGPSEPLAAADHNRHVDDRGPIRCEA----PGRPARLHAVPAALVRPGTHLPAADPR- 235
            R PGP EPLA     +    RGP  C A    P  P RL   P     P   LP    R 
Sbjct: 2306 RAPGPREPLA-----QDSPGRGPSVCLARAARPAGPQRLLPGPRTGQAPRARLPQKPARS 2360

Query: 234  -RREADGTVL 208
             +RE  G VL
Sbjct: 2361 VQRERRGLVL 2370

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>LCMT1_CRYNE (Q5KLL9) Leucine carboxyl methyltransferase 1 (EC 2.1.1.-) (Protein|
           phosphatase methyltransferase 1)
          Length = 398

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = -2

Query: 420 LLPHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAAD 241
           ++ HG ++ P P++P AA  H R        RC  P R  R    P   VRP   LP A 
Sbjct: 13  IIYHGAIQTPPPTDPNAAPAH-RPAPRPALGRCRPPHRRRRRLRPP---VRPPVSLPVAL 68

Query: 240 PRRREA 223
             R  A
Sbjct: 69  TTRSSA 74

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>TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box protein 1)|
           (Testis-specific T-box protein)
          Length = 479

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = -2

Query: 432 HGPQLLPH---GQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVP 283
           H PQLL       L  PG   PL      RH      +R EAPG    LH  P
Sbjct: 348 HPPQLLARVLSPALPGPGGLVPLPGGSGGRHSPPHADLRLEAPGASEPLHHHP 400

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>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
 Frame = -2

Query: 387 PSEPLAAADHNRHV-----DDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAADPRRR-- 229
           P+ P AAA   R       DDRG +R      PAR   V  A  +P   L   + RRR  
Sbjct: 230 PATPDAAAPRGRRTGGDDEDDRGAVR-RGSSLPARGKVVAPAPAKPAARLKTEEERRRGK 288

Query: 228 -------EADGT 214
                  E DGT
Sbjct: 289 LTVTSNLEEDGT 300

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>HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)|
          Length = 388

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
 Frame = +2

Query: 182 ASAGHPTPSSTVPXXXXXXXXXXXXCVPGRTRAAGTAWSRAGRPG-ASQRMGPRSSTCRL 358
           ASA    P    P                   AA  A S +G PG A       +  C  
Sbjct: 102 ASAYSSAPGEAPPSAAAAAAAAAAAA------AAAAAASSSGGPGPAGPAAAEAAKQCSP 155

Query: 359 WSAAARGSEGP--------GTRSWPCGRSWGP 430
            SAAA+ S GP        G+  +PC R   P
Sbjct: 156 CSAAAQSSSGPAALPYGYFGSGYYPCARMGPP 187

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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 263 PGRTRAAGTAWSRAGRPGASQRMGPRSSTCRLWSAAARGSEG-PGTRSWP 409
           PG+  A G    + G PGA    GP  S   + S   +G  G PG+R +P
Sbjct: 310 PGKPGAPG----KPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFP 355



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 414 PHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAAD 241
           P G+   PGP  P      +    DRGP     P  PA     P A  +PGT  P AD
Sbjct: 270 PPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGT--PGAD 325

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>EMID2_MOUSE (Q91VF6) Collagen alpha-1(XXVI) chain precursor (EMI|
           domain-containing protein 2) (Emu2 protein) (Emilin and
           multimerin domain-containing protein 2)
          Length = 440

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 414 PHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPG 262
           P GQ+  PGP+ P  +        ++GP+       P     +P  + RPG
Sbjct: 203 PPGQMGPPGPAGPPGSKGEQGQTGEKGPVGPPGLLGPPGPRGLPGEMGRPG 253

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>FBS1_HUMAN (P62706) Fibrosin-1|
          Length = 177

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 350 CRLWSAA--ARGSEGPGTRSWPCGRSWGPW 433
           CR+   A      EG G  +W CG S GPW
Sbjct: 19  CRVTGRAEVTASREGRGACAWECGSSRGPW 48

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>CF047_HUMAN (O95873) Protein C6orf47 (Protein G4)|
          Length = 294

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -2

Query: 426 PQLLPHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHL 253
           P + P G L VPGP  PL        +   G +R E PG P+R    P   ++  T+L
Sbjct: 128 PGVSPEGGLSVPGPGAPLEKPGRREKL--LGWLRGE-PGAPSRYLGGPEECLQISTNL 182

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>TINAL_RAT (Q9EQT5) Tubulointerstitial nephritis antigen-like precursor|
           (Glucocorticoid-inducible protein 5)
          Length = 467

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 305 GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSWGPW 433
           GRP   +R G  S     W       +G   + W    SWGPW
Sbjct: 389 GRPEQYRRHGTHSVKITGWGEETL-PDGRTIKYWTAANSWGPW 430

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>HXA13_MOUSE (Q62424) Homeobox protein Hox-A13 (Hox-1.10)|
          Length = 386

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
 Frame = +2

Query: 278 AAGTAWSRAGRPGASQRMGPRSST-CRLWSAAARGSEGP--------GTRSWPCGR 418
           AA  A S +G PG +   G  ++  C   SAAA+ S GP        G+  +PC R
Sbjct: 128 AAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCAR 183

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>ENC_DROME (Q8MSX1) Protein encore|
          Length = 1818

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -2

Query: 426  PQLLPHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAA 277
            PQ  PH  L    P  P    + ++      P    APGR A L + P A
Sbjct: 1355 PQSAPHHALITAAPFYPANGGNMDQGASQSAPSTPAAPGRQAPLFSTPPA 1404

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>YPE1_RHORU (P23138) Hypothetical 28 kDa protein in petA 5'region|
          Length = 255

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 278 AAGTAWSRAGRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSW 424
           A G AW      G      P  + C  W  +  G  GP T   P  R+W
Sbjct: 88  AVGEAWRPCADAGLRAAARPGGTRC--WPGSPLGGTGPPTNRPPRSRAW 134

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>TINAL_MOUSE (Q99JR5) Tubulointerstitial nephritis antigen-like precursor|
           (Androgen-regulated gene 1 protein) (Adrenocortical
           zonation factor 1) (AZ-1) (Tubulointersititial nephritis
           antigen-related protein) (TARP)
          Length = 466

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 305 GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSWGPW 433
           GRP   +R G  S     W       +G   + W    SWGPW
Sbjct: 388 GRPEQYRRHGTHSVKITGWGEETL-PDGRTIKYWTAANSWGPW 429

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +2

Query: 263 PGRTRAAGTAWSR-----AGRPGASQRMGPRSSTCRLWSAAARGSEGP 391
           PG   A+G A  R     AGRPG    MGPR       +    G EGP
Sbjct: 420 PGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGP 467

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = +2

Query: 263  PGRTRAAGTAW--SRAGRPGASQRMGPRSSTCRLW------SAAARGSEGPGTRSWPCGR 418
            PG   A G+A      G PGA+ R+GP   +  +        A   GS+GP   + P GR
Sbjct: 848  PGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPAGKZGSKGPRGETGPAGR 907

Query: 419  SWGP 430
               P
Sbjct: 908  PGEP 911

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>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Cux)
          Length = 1515

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
 Frame = -2

Query: 426  PQLLPHGQLRVPGPSEPLA--AADHNRHVDDRGPIRC-EAPGRPARLHAVPAALVRPGTH 256
            P+ LP G    P P   LA  AA  +       P    EAPG  AR      +   P T 
Sbjct: 1398 PRPLPEGLADAPAPVPSLAAPAAGEDAATSATAPATATEAPG-AARAGPAERSSALPSTS 1456

Query: 255  LPAADPRRREADGTVLLGV 199
             PA  P RR +    L G+
Sbjct: 1457 APANAPARRPSSLQSLFGL 1475

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>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 807

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
 Frame = -2

Query: 429 GPQLLPHG-QLRVPGPSEPL-----------AAADHNRHVDDRGPIRCEAP---GRPARL 295
           GP   P G  +++PG   P+           AAA   R  D  GP    +    G     
Sbjct: 354 GPSAAPDGGPVQLPGAKVPIGPGRRAGEGRGAAAAAPRRRDRLGPAARRSERFLGGHGPH 413

Query: 294 HAVPAALVRPGTHLPAAD 241
             VPA+ +RPGT  PA D
Sbjct: 414 RTVPASTLRPGTPSPAPD 431

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
 Frame = -2

Query: 432 HGPQLL-----PHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVR 268
           HGPQ +     PHG L   GP  P  ++    H+  +GP     PG   + H  P     
Sbjct: 672 HGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGP-----PG--PQSHIGPQGPPG 724

Query: 267 PGTHLPAADP 238
           P  HL    P
Sbjct: 725 PQGHLGPQGP 734

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>FIBP_ADE12 (P36711) Fiber protein (pIV)|
          Length = 587

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 384 SEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAADPRRREADG 217
           S PL  +++N H+    P+   + G  +   A P ++      LP ADP    +DG
Sbjct: 169 SAPLDVSNNNLHLTTETPLVVNSSGALSVATADPISVRNNALTLPTADPLMVSSDG 224

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +2

Query: 305 GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSWGPWS 436
           G PGA+   GP           ARG  GP     P G   GP S
Sbjct: 438 GEPGATGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGS 481

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>ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1807

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 402  LRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAADPRRREA 223
            LR P  S+  + +D   H+ + G +    PG    LH + AA V  GTHL      R  +
Sbjct: 1356 LRSPASSQRPSVSDDTEHLVN-GRMDFAYPGSANSLHRMTAANVAYGTHLSPHQTHRMLS 1414

Query: 222  DGTVL 208
              + L
Sbjct: 1415 TSSTL 1419

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>DNAE2_RHOBA (Q7UXK9) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1145

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 24/89 (26%), Positives = 31/89 (34%)
 Frame = +2

Query: 167 SWRHVASAGHPTPSSTVPXXXXXXXXXXXXCVPGRTRAAGTAWSRAGRPGASQRMGPRSS 346
           SWR  A+  H + +   P              PG  R+    WSR  R    Q    + S
Sbjct: 3   SWRCAAARSHASANRCTPKERLGRQENRSAHCPGTIRSIRMEWSRWER----QEFRCKRS 58

Query: 347 TCRLWSAAARGSEGPGTRSWPCGRSWGPW 433
             RL S+  + S     R W   R   PW
Sbjct: 59  FQRLGSSCEQFSPPMQNRRWEIERL--PW 85

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>POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glycoprotein E1;|
           Spike glycoprotein E2] (Fragment)
          Length = 522

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
 Frame = -2

Query: 414 PHGQLRVPGPSEPLAAADHNRHVDDR-------GPIRCEAP-GRPARLHAVP---AALVR 268
           PHGQL V  P +P    ++  +           G   C AP G P   +A+P     L  
Sbjct: 300 PHGQLEVQVPPDPGDLVEYIMNYTGNQQSRWGLGSPNCHAPIGPPRFANAIPLTARGLWG 359

Query: 267 PGTHLPAADPRRR 229
           P   +PAA  RRR
Sbjct: 360 PRQSVPAALGRRR 372

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>Y4632_RHILO (Q98DM9) Hypothetical UPF0011 protein mlr4632|
          Length = 294

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = -2

Query: 435 DHGPQLLPHGQLRVPGPSEPLAAADHNRHVDD----RGPIRCEAPGRPARLHAVPAALVR 268
           DHG +++P     +PGPS PLAA   +    D     G +  +   R  RL A+ A    
Sbjct: 113 DHGIRVVP-----IPGPSAPLAALTASGLPSDAFLFAGFLPVKVGQRLTRLEALKAV--- 164

Query: 267 PGTHLPAADPRR-READGTVLLGVG 196
           P T +    PRR  E+ G ++  +G
Sbjct: 165 PATLIFFESPRRLAESLGAMVEALG 189

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>VPAP_EHV1V (P84399) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP)
          Length = 405

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 184 FSRSPYTQQHCSIGFTPARVGGWKVRAGAHQGGGDGVEPRRPAGRLAAD 330
           F    Y  Q C +GF+PA      + AG  +   +  E  +P  +L  D
Sbjct: 329 FFMCSYPTQPCQVGFSPAAFSSTPMGAGVKRRASEEEESDQPPKKLFPD 377

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>VPAP_EHV1D (P36322) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (Fragment)
          Length = 97

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 184 FSRSPYTQQHCSIGFTPARVGGWKVRAGAHQGGGDGVEPRRPAGRLAAD 330
           F    Y  Q C +GF+PA      + AG  +   +  E  +P  +L  D
Sbjct: 21  FFMCSYPTQPCQVGFSPAAFSSTPMGAGVKRRASEEEESDQPPKKLFPD 69

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>VPAP_EHV1B (P28958) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (DNA-binding gene 18 protein)
          Length = 405

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 184 FSRSPYTQQHCSIGFTPARVGGWKVRAGAHQGGGDGVEPRRPAGRLAAD 330
           F    Y  Q C +GF+PA      + AG  +   +  E  +P  +L  D
Sbjct: 329 FFMCSYPTQPCQVGFSPAAFSSTPMGAGVKRRASEEEESDQPPKKLFPD 377

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
 Frame = +2

Query: 263  PGRTRAAGTAWSRA--------GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCG 415
            PGR  AAG    R         G PG     GP   T +       G++GP   S P G
Sbjct: 978  PGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1036



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +2

Query: 263 PGRTRAAGTAWSRA--GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSWGP 430
           PG   A G    R   G  GA+  +GP+  T     A  +G +GP   + P G    P
Sbjct: 357 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP 414

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = +2

Query: 263 PGRTRAAGTAWSR-----AGRPGASQRMGPRSSTCRLWSAAARGSEGP 391
           PG   + G A  R     AGRPG    MGPR       +    G EGP
Sbjct: 426 PGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGP 473

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = +2

Query: 263 PGRTRAAGTAWSR-----AGRPGASQRMGPRSSTCRLWSAAARGSEGP 391
           PG   + G A  R     AGRPG    MGPR       +    G EGP
Sbjct: 426 PGNRGSTGPAGIRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPSGKEGP 473

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
 Frame = +2

Query: 263  PGRTRAAGTAWSRA--------GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCG 415
            PGR  AAG    R         G PG     GP   T +       G++GP   S P G
Sbjct: 1018 PGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1076

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>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2|
          Length = 841

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 414 PHGQLRVPGPSEPLAAADHNRHVDDRGPIRCEAPGRPARLHAVPAALVRPGTHLPAADPR 235
           P      P  +EP+AAA+         P+R           A PAA   P +  P+AD R
Sbjct: 138 PAASQSAPAAAEPVAAAE---------PVR----------EAAPAAAPAPASAAPSADAR 178

Query: 234 RRE 226
           +R+
Sbjct: 179 KRD 181

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>EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 444

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 396 VPGPSEPLAAADHNRHVDDRGPIRCEA-PGRPARLHA--VPAALVRPGTHLPAADP 238
           +PGP+ P    D    V  RGP   +  PGRP +  A   P  +  PG   P   P
Sbjct: 201 LPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPGKMGPPGPPGPPGPP 256

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>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog|
          Length = 1278

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 PIRCEAPGRPARLHAVPAALVRPGTHLPAADPRRREADG 217
           P R   P  PA   + P   +RPG+  PAA  +R E+ G
Sbjct: 7   PARPGFPSSPAPGSSPPRCHLRPGSTAPAAAGKRTESPG 45

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>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1|
          Length = 1918

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 375 LAAADHNRHVDDRGPIRCEAPGRPA-RLHAVPAALVRPGTHLPAADPR 235
           L A   N H + RGP+  E P R   + +  PA  +R G   P   PR
Sbjct: 8   LDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPR 55

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>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
 Frame = +2

Query: 173 RHVASAGHPTPSSTVPXXXXXXXXXXXXCVPGRTRAAGT--AWSRAGRPGASQRMGPRSS 346
           R V   GH  P+                C  G  RA  +  A + AG PG          
Sbjct: 49  RDVLPHGHEPPAEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPG-------- 100

Query: 347 TCRLWSAAARGSEGPG 394
                +AAARG+ GPG
Sbjct: 101 -----AAAARGAAGPG 111

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>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 305 GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCGRSWGP 430
           G PGA   +GP  +     +A  RG  GP     P G    P
Sbjct: 250 GAPGAKGELGPAGNNGPTGAAGGRGEPGPPGSLGPAGPPGNP 291

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
 Frame = +2

Query: 263  PGRTRAAGTAWSRA--------GRPGASQRMGPRSSTCRLWSAAARGSEGPGTRSWPCG 415
            PGR  AAG    R         G PG     GP   T +       G++GP   S P G
Sbjct: 977  PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,994,223
Number of Sequences: 219361
Number of extensions: 884155
Number of successful extensions: 3548
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3527
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result