ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30h11 |
|---|---|
| Clone Library Name | barley_pub |
>MT1C_SHEEP (P09578) Metallothionein-1C (MT-1C) (Metallothionein-IC) (MT-IC)| Length = 61 Score = 35.8 bits (81), Expect = 0.076 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +3 Query: 246 SCYNQSSPSQAPECMIPVRRCPA---GCRDLCYVHCPSCKLVCMCELAGTEC 392 SC SS S A C RCP+ C C V C C C+C+ A +C Sbjct: 6 SCSTGSSCSCAGSCTCKACRCPSCKKSCCSCCPVGCAKCAQGCICKGASDKC 57
>OOXA1_RHIME (Q92XP4) Opine oxidase subunit A (EC 1.-.-.-) (Octopine oxidase| subunit A) Length = 458 Score = 35.0 bits (79), Expect = 0.13 Identities = 24/64 (37%), Positives = 28/64 (43%) Frame = -2 Query: 284 LWGLRRAALVVAAHHGGLRPGAHVDGDHVGVRKNGVVHRLGTDRHEECGGAGEQHHRTRA 105 LW LRRA + + H G LR + DG V R V HRL G + H RA Sbjct: 212 LWMLRRAGVDIYNHSGDLRIKSAADGLEVHFRMREVEHRLSASHVGLHEGVIPETHLPRA 271 Query: 104 LDRR 93 L R Sbjct: 272 LGCR 275
>POLG_FMDVA (P03308) Genome polyprotein [Contains: Leader protease (EC 3.4.22.46)| (P20A); Coat protein VP4; Coat protein VP3; Coat protein VP2; Coat protein VP1; Core protein X; Core protein p14; Core protein p41; Core protein p19; Genome-linked protein V Length = 2332 Score = 34.7 bits (78), Expect = 0.17 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = +2 Query: 164 PADEQPHSFGPQRGPRLHEPRGAAHRGELLQPEQPVAGP 280 PA+EQP + GP GP L R R +L Q E P AGP Sbjct: 1570 PAEEQPQAEGPYTGP-LERQRPLKVRAKLPQQEGPYAGP 1607
>MT1B_SHEEP (P09577) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 34.7 bits (78), Expect = 0.17 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = +3 Query: 246 SCYNQSSPSQAPECMIPVRRCPA---GCRDLCYVHCPSCKLVCMCELAGTEC 392 SC S S A C RCP+ C C V C C C+C+ A +C Sbjct: 6 SCPTSGSCSCAGSCTCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGASDKC 57
>MT1A_SHEEP (P67982) Metallothionein-1A (MT-1A) (Metallothionein-IA) (MT-IA)| (MTC) Length = 61 Score = 33.9 bits (76), Expect = 0.29 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = +3 Query: 246 SCYNQSSPSQAPECMIPVRRCPA---GCRDLCYVHCPSCKLVCMCELAGTEC 392 SC S S A C RCP+ C C V C C C+C+ A +C Sbjct: 6 SCPTGGSCSCAGSCTCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGASDKC 57
>MT1A_BOVIN (P67983) Metallothionein-1A (MT-1A) (Metallothionein-IA) (MT-IA)| (MTC) Length = 61 Score = 33.9 bits (76), Expect = 0.29 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = +3 Query: 246 SCYNQSSPSQAPECMIPVRRCPA---GCRDLCYVHCPSCKLVCMCELAGTEC 392 SC S S A C RCP+ C C V C C C+C+ A +C Sbjct: 6 SCPTGGSCSCAGSCTCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGASDKC 57
>POLG_FMDV1 (P03306) Genome polyprotein [Contains: Leader protease (EC 3.4.22.46)| (P20A); Coat protein VP4; Coat protein VP3; Coat protein VP2; Coat protein VP1; Core protein P52; Genome-linked protein VPg1; Genome-linked protein VPg2; Genome-linked prote Length = 2332 Score = 32.7 bits (73), Expect = 0.65 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +2 Query: 128 RLRRRIPHDGRCPADEQPHSFGPQRGPRLHEPRGAAHRGELLQPEQPVAGP 280 ++R + + PA++QP + GP GP L + R +L Q E P AGP Sbjct: 1558 KVRDDVSSEPAQPAEDQPQAEGPYSGP-LERQKPLKVRAKLPQQEGPYAGP 1607
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 32.3 bits (72), Expect = 0.85 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 252 YNQSSPSQAPECMIPVR-RCPAGCRDLCYVHCPSCKLVCMCELAGTECYDP 401 YN +P+ C P CP C + C+ HCP K+ + EL T C DP Sbjct: 1146 YNSCAPACQVTCQHPEPLACPVQCVEGCHAHCPPGKI--LDELLQT-CVDP 1193
>POLG_FMDVO (P03305) Genome polyprotein [Contains: Leader protease (EC 3.4.22.46)| (P20A); Coat protein VP4; Coat protein VP2; Coat protein VP3; Coat protein VP1; Core protein p12; Core protein p34; Core protein p14; Genome-linked protein VPg; Protease (EC Length = 2332 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 164 PADEQPHSFGPQRGPRLHEPRGAAHRGELLQPEQPVAGP 280 P +EQP + GP GP L + R +L Q E P AGP Sbjct: 1570 PVEEQPQAEGPYAGP-LERQKPLKVRAKLPQQEGPYAGP 1607
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 252 YNQSSPSQAPECMIPVR-RCPAGCRDLCYVHCPSCKLVCMCELAGTECYDP 401 YN +P+ C P CP C + C+ HCP K+ + EL T C DP Sbjct: 1146 YNSCAPACPITCQHPEPLACPVQCVEGCHAHCPPGKI--LDELLQT-CIDP 1193
>DNLJ_STRCO (Q9Z585) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 735 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Frame = +3 Query: 198 NVVPVYMSPGAQPTVVSCYNQSSPSQAPECMIPVRRCPAGCRDLCYVH---CPSCKLVCM 368 +V+P + P A S P++ PEC P++ G DL + CP+ + Sbjct: 397 DVIPEILGPVADLRDGSEREFVMPAECPECGTPLKAMKEGDIDLRCPNARACPAQLRERV 456 Query: 369 CELAGTECYDPRFVGG 416 LAG EC D GG Sbjct: 457 AYLAGRECLDIEHFGG 472
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 252 YNQSSPSQAPECMIPVR-RCPAGCRDLCYVHCPSCKLVCMCELAGTECYDPR 404 YN +P+ C P CP C + C+ HCP ++ + EL T C DP+ Sbjct: 1146 YNSCAPACPVTCQHPEPLACPVQCVEGCHAHCPPGRI--LDELLQT-CVDPQ 1194
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = +2 Query: 176 QPHSFGPQRGPRLHEPRGAAHRGELLQPEQPVAGPRVHDPGAP 304 +P P R P E GA RG EQPV P V DP AP Sbjct: 685 EPLPLPPARSPS-QESIGARSRGSGHSQEQPVPQPSVGDPSAP 726
>VWF_PIG (Q28833) Von Willebrand factor precursor (vWF) (Fragment)| Length = 2482 Score = 31.2 bits (69), Expect = 1.9 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 252 YNQSSPSQAPECMIPVR-RCPAGCRDLCYVHCPSCKLV 362 YN +P+ C P CP C + C+ HCP K++ Sbjct: 820 YNSCAPACPVTCQHPEPLACPVSCVEGCHAHCPPGKIL 857
>POLG_FMDVZ (P49303) Genome polyprotein [Contains: Leader protease (EC 3.4.22.46)| (P20A); Coat protein VP4; Coat protein VP3; Coat protein VP2; Coat protein VP1; Core protein X; Core protein p14; Core protein p41; Core protein p19; Genome-linked protein V Length = 2336 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 164 PADEQPHSFGPQRGPRLHEPRGAAHRGELLQPEQPVAGP 280 P +EQP + GP GP L + + +L Q E P AGP Sbjct: 1571 PVEEQPQAEGPYTGP-LERQKPLKVKAKLPQQEGPYAGP 1608
>ZN553_HUMAN (Q96MX3) Zinc finger protein 553| Length = 618 Score = 30.0 bits (66), Expect = 4.2 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 92 GVCPAPVCGGAARLRRRIPHDGRCPADEQPHSFGPQRGPRLHEPRG 229 GVC +AR++ + H G P +P + GP + PR P G Sbjct: 143 GVCGKGFGDSSARIKHQRTHSGEKPYRARPPAQGPPKIPRSRIPAG 188
>KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-associated| protein 4.12) (Ultrahigh sulfur keratin-associated protein 4.12) Length = 201 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/44 (34%), Positives = 17/44 (38%) Frame = +3 Query: 279 PECMIPVRRCPAGCRDLCYVHCPSCKLVCMCELAGTECYDPRFV 410 P C I CP+ C C C + VC T CY P V Sbjct: 143 PSCCISSSCCPSCCESSCCRPCCCLRPVCGRVSCHTTCYRPTCV 186
>KRA92_HUMAN (Q9BYQ4) Keratin-associated protein 9-2 (Keratin-associated protein| 9.2) (Ultrahigh sulfur keratin-associated protein 9.2) Length = 174 Score = 29.3 bits (64), Expect = 7.2 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Frame = +3 Query: 219 SPGAQPTVV--SCYNQ----SSPSQAPECMIPVRRCPAGCRDLCYVHCPSCKLVCMCELA 380 +P QPT SC Q SS Q+ C P CR CY C C+ + Sbjct: 83 TPCCQPTCCGSSCCGQTSCGSSCGQSSSC------APVYCRRTCYYPTTVCLPGCLNQSC 136 Query: 381 GTECYDP 401 G+ C P Sbjct: 137 GSNCCQP 143
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Frame = +3 Query: 234 PTVVSCYNQSSPSQAPECMIPVRR---CPAGCRDLCYVHCPSCKLVCMCELAGTEC 392 P SC++ C P +R C C++ C CP C+ C ++C Sbjct: 1444 PCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQC 1499
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 155 GRCPADEQPHSFGPQRGPRLHEPRGAA 235 GR P + P SF P+RG R++ R A+ Sbjct: 188 GRQPRGKAPRSFSPRRGRRVYHDRSAS 214
>R3HD2_MOUSE (Q80TM6) R3H domain-containing protein 2| Length = 1044 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 168 PMNNPILSDPNVVPVYMSPGAQPTVVSCYNQSSPSQAPECMIPV 299 P+NN ++S P VP + P QP Q SPS P+ ++PV Sbjct: 460 PLNNHMISQP--VPA-LQPSPQPV------QFSPSSCPQVLLPV 494
>YQFO_BACSU (P54472) UPF0135 protein yqfO| Length = 373 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +3 Query: 408 VGGDGNKFLFHG-RRDADFCLLSDANLHI 491 +GGDGNK++ H R+ AD + D H+ Sbjct: 289 LGGDGNKYIHHAKRKGADVYVTGDLYFHV 317
>CD177_HUMAN (Q8N6Q3) CD177 antigen precursor (Polycythemia rubra vera protein| 1) (PRV-1) (NB1 glycoprotein) (NB1 GP) (Human neutrophil alloantigen 2a) (HNA-2a) Length = 437 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 Query: 143 IPHDGRCPADEQPHSFGPQRGPRLHEPRGAAH 238 +P D +CP QP PR+ PRGA H Sbjct: 319 VPGDRQCPTCVQPLGTCSSGSPRMTCPRGATH 350
>Y1380_BACHD (Q9KD39) UPF0135 protein BH1380| Length = 372 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +3 Query: 408 VGGDGNKFLFHG-RRDADFCLLSDANLHI 491 +GGDGNK++ H R+ AD + D H+ Sbjct: 288 LGGDGNKYMAHALRKGADVIVTGDVYYHV 316
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/61 (27%), Positives = 19/61 (31%) Frame = +3 Query: 219 SPGAQPTVVSCYNQSSPSQAPECMIPVRRCPAGCRDLCYVHCPSCKLVCMCELAGTECYD 398 SP P V C +P P CP + C C C C C T C Sbjct: 45 SPCCTPKVCPC---PTPCPCPATCPAACACPCPMKPCCPTKCTCCPKKCTCCPQPTCCVQ 101 Query: 399 P 401 P Sbjct: 102 P 102
>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1| Length = 1909 Score = 28.9 bits (63), Expect = 9.3 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Frame = +3 Query: 234 PTVVSCYNQSSPSQAPECMIPVRR---CPAGCRDLCYVHCPSCKLVCMCELAGTEC 392 P SC++ C P +R C C++ C CP C+ C ++C Sbjct: 1436 PCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRTCQNRCVHSQC 1491
>ARHG3_MACFA (Q9N0A8) Rho guanine nucleotide exchange factor 3| Length = 526 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = -3 Query: 514 RFPMKCALMCRLASESRQKSASLRPWNRNLLPSPPTKRGS 395 RF SESR + RPW+RN PS +R S Sbjct: 62 RFSQTLQRSISFRSESRPDILAPRPWSRNAAPSSTKRRDS 101
>ARHG3_HUMAN (Q9NR81) Rho guanine nucleotide exchange factor 3 (Exchange factor| found in platelets and leukemic and neuronal tissues) (XPLN) Length = 526 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = -3 Query: 514 RFPMKCALMCRLASESRQKSASLRPWNRNLLPSPPTKRGS 395 RF SESR + RPW+RN PS +R S Sbjct: 62 RFSQTLQRSISFRSESRPDILAPRPWSRNAAPSSTKRRDS 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,759,483 Number of Sequences: 219361 Number of extensions: 1477961 Number of successful extensions: 4873 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4853 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
