ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30h10 |
|---|---|
| Clone Library Name | barley_pub |
>HAM1_ANASP (Q8YM52) HAM1 protein homolog| Length = 196 Score = 32.7 bits (73), Expect = 0.71 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1 Query: 91 GLHGE*VEGLPGVHGARHGRTDGQ 20 GL + + GLPGV+ AR+G+TDG+ Sbjct: 70 GLQVDALNGLPGVYSARYGKTDGE 93
>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 17) (ADAM-TS 17) (ADAM-TS17) Length = 1095 Score = 32.3 bits (72), Expect = 0.92 Identities = 18/75 (24%), Positives = 28/75 (37%) Frame = +2 Query: 191 PGPAASHLRGGAGDDGTCSKLPAPVADALVHYAASNVTPQQTAAEIGVSLRVLQRRSPCN 370 PGP +H G + + C LP P + + + G+ V+ PC Sbjct: 575 PGPGGTHCPGASVEHAVCENLPCPKGLPSFRDQQCQAHDRLSPKKKGLLTAVVVDDKPCE 634 Query: 371 FLVFGLGLDSPMWAA 415 LG +SP+ A Sbjct: 635 LYCSPLGKESPLLVA 649
>LEU3_ZYGRO (Q96WI0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 362 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 13/68 (19%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T S LP A ADA++ + +V P+Q +I L++ Sbjct: 42 HLIGGAAIDATGSPLPDDALAAAKKADAVLLGAVGGPKWGTGSVRPEQGLLKIRKELQLY 101 Query: 350 QRRSPCNF 373 PCNF Sbjct: 102 ANLRPCNF 109
>LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 364 Score = 30.8 bits (68), Expect = 2.7 Identities = 41/143 (28%), Positives = 54/143 (37%), Gaps = 26/143 (18%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T LP A ADA++ + V P+Q +I L + Sbjct: 43 HLIGGAAIDATGVPLPDEALEAAKKADAVLLGAVGGPKWGTGAVRPEQGLLKIRKELNLY 102 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHG----------GRTVF---LEEDASWIASVRSKHP 490 PCNF L SP+ A G G F E+D S +AS Sbjct: 103 ANLRPCNFASESLLELSPIKAEFAKGTDFTVVRELVGGIYFGERKEDDGSGVAS------ 156 Query: 491 GLESYHVVYDTRVTEADDLMSLR 559 E+Y V R+T M+L+ Sbjct: 157 DTETYSVPEVQRITRMAAFMALQ 179
>LEU3_CANAL (P87186) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 373 Score = 30.8 bits (68), Expect = 2.7 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 13/94 (13%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T LP A +DA++ + V P+Q +I L + Sbjct: 47 HLIGGAAIDATGVPLPDDALESAKSSDAVLLGAVGGPKWGTGTVRPEQGLLKIRKELNLY 106 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHGGRTVFLEE 451 PCNF L SP+ A + G + + E Sbjct: 107 ANIRPCNFASDSLLELSPLKAEVVKGTNLIIVRE 140
>LEU3_ASHGO (O60027) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 372 Score = 30.4 bits (67), Expect = 3.5 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 13/79 (16%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALVHYAASN-------VTPQQTAAEIGVSLRVL 349 HL GGA D T S LP A ADA++ A V P+Q ++ L V Sbjct: 44 HLVGGAAIDATGSALPDEALGAAKEADAVLLGAVGGPKWQGGAVRPEQGLLKLRQELGVY 103 Query: 350 QRRSPCNFLVFGLGLDSPM 406 PCNF L SP+ Sbjct: 104 ANLRPCNFAADSLLELSPL 122
>LEU3_PICJA (P08791) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 363 Score = 30.4 bits (67), Expect = 3.5 Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 26/143 (18%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T LP + ADA++ + V P+Q +I L + Sbjct: 43 HLIGGAAIDATGVPLPDDALEASKKADAVLLGAVGGPKWGTGAVRPEQGLLKIRKELNLY 102 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHGGRTVFL-------------EEDASWIASVRSKHP 490 PCNF L SP+ A + G V + E+D S +AS Sbjct: 103 ANLRPCNFASESLLDLSPIKAEVVKGTDFVVVRELVGGIYFGERKEDDGSGVAS------ 156 Query: 491 GLESYHVVYDTRVTEADDLMSLR 559 E+Y V R+T M+L+ Sbjct: 157 DTETYSVPEVQRITRMAAFMALQ 179
>LEU3_PICST (O94114) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 373 Score = 30.0 bits (66), Expect = 4.6 Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 23/140 (16%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T LP A ++DA++ + V P+Q +I L + Sbjct: 47 HLIGGAAIDSTGVPLPDDSLAAAKLSDAVLLGAVGGPKWGTGAVRPEQGLLKIRKELNLY 106 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHG----------GRTVFLEEDASWIASVRSKHPGLE 499 PCNF L SP+ + + G G F E ++ E Sbjct: 107 ANLRPCNFASDALLELSPLKSEIVKGTNFTVVRELVGGIYFGERQEQEESADGESAWDTE 166 Query: 500 SYHVVYDTRVTEADDLMSLR 559 Y V TR+T M+L+ Sbjct: 167 KYSVAEVTRITRMAAFMALQ 186
>PYRH_STRP8 (P65940) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +2 Query: 263 VADALVHYAASN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGLDSPMWAALNHGG 430 +AD+L HY P Q AE + R L+ +VFG G+ SP ++ Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 431 -RTVFLEEDASWIA 469 R +E DA +A Sbjct: 147 LRAAEIEADAILMA 160
>PYRH_STRP6 (Q5XDH4) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +2 Query: 263 VADALVHYAASN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGLDSPMWAALNHGG 430 +AD+L HY P Q AE + R L+ +VFG G+ SP ++ Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 431 -RTVFLEEDASWIA 469 R +E DA +A Sbjct: 147 LRAAEIEADAILMA 160
>PYRH_STRP3 (P65939) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +2 Query: 263 VADALVHYAASN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGLDSPMWAALNHGG 430 +AD+L HY P Q AE + R L+ +VFG G+ SP ++ Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 431 -RTVFLEEDASWIA 469 R +E DA +A Sbjct: 147 LRAAEIEADAILMA 160
>PYRH_STRP1 (P65938) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +2 Query: 263 VADALVHYAASN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGLDSPMWAALNHGG 430 +AD+L HY P Q AE + R L+ +VFG G+ SP ++ Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 431 -RTVFLEEDASWIA 469 R +E DA +A Sbjct: 147 LRAAEIEADAILMA 160
>LEU3_YAMOH (P41926) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 368 Score = 30.0 bits (66), Expect = 4.6 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T LP A +DA++ + V P+Q +I L + Sbjct: 42 HLIGGAAIDATGVPLPDETLEAAKSSDAVLLGAVGGPKWGTGAVRPEQGLLKIRKELNLY 101 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHG----------GRTVFLEEDASWIASVRSKHPGLE 499 PCNF+ L SP+ + + G G F E +S E Sbjct: 102 ANLRPCNFVSDSLLELSPLKSEIVKGTNFTVVRELVGGIYFGERQEQEESSDGQSAWDTE 161 Query: 500 SYHVVYDTRVTEADDLMSLR 559 Y V TR+T M+L+ Sbjct: 162 KYSVEEVTRITRMAAFMALQ 181
>LEU3_ZYGBA (Q9P3Y0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 362 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 13/68 (19%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GG+ D T S LP A ADA++ + V P+Q +I L++ Sbjct: 42 HLIGGSAIDATGSPLPDEALAAAKKADAVLLGAVGGPKWGTGAVRPEQGLLKIRKELQLY 101 Query: 350 QRRSPCNF 373 PCNF Sbjct: 102 ANLRPCNF 109
>PP16A_HUMAN (Q96I34) Protein phosphatase 1 regulatory subunit 16A (Myosin| phosphatase-targeting subunit 3) Length = 528 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -1 Query: 559 PEGHEVVGLGDAGVVHDVVGLEPRVLGADGGDPRRVLLEEHRAAAVVERRP 407 PEG E + G+ D V +P GGDP + L A VERRP Sbjct: 473 PEGPESPETAEPGLPGDTVTPQPDCGFRAGGDPPLLKLTAPAVEAPVERRP 523
>LEU3_CANBO (Q01987) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 365 Score = 29.6 bits (65), Expect = 6.0 Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 26/144 (18%) Frame = +2 Query: 206 SHLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRV 346 +HL GGA D T LP A +DA++ + V P+Q +I L + Sbjct: 44 NHLIGGAAIDATGVPLPDEALEAAKKSDAVLLGAVGGPKWGTGEVRPEQGLLKIRKELNL 103 Query: 347 LQRRSPCNFLVFGLGLDSPMWAALNHG----------GRTVF---LEEDASWIASVRSKH 487 PCNF L SP+ + + G G F +E+D S AS Sbjct: 104 YANLRPCNFASDKLLDLSPLKSDIVKGTDFTVVRELVGGIYFGDRVEDDGSGFAS----- 158 Query: 488 PGLESYHVVYDTRVTEADDLMSLR 559 ESY V R+T +SL+ Sbjct: 159 -DSESYSVPEVERITRMAAFLSLQ 181
>NICA_DROME (Q9VC27) Nicastrin homolog precursor| Length = 695 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 16/75 (21%) Frame = +2 Query: 380 FGLGLDSPMWAALNHGGRTVFLEEDASWIASVRSKHPGLESYHVVYD------------- 520 F L + S M A L FL D ++ A + + P + YH +YD Sbjct: 404 FNLNIQSEMSAHLPPTSAQSFLRRDPNFNALILNARPTNKYYHSIYDDADNVDFTYANTS 463 Query: 521 ---TRVTEADDLMSL 556 T++TE +D SL Sbjct: 464 KDFTQLTEVNDFKSL 478
>PAM17_EMENI (Q5BGF9) Presequence translocated-associated motor subunit pam17,| mitochondrial precursor Length = 243 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/69 (33%), Positives = 33/69 (47%) Frame = -2 Query: 549 MRSSASVTRVSYTTW*DSSPGCLERTEAIHDASSSRNTVRPPWLSAAHIGLSSPSPNTRK 370 MR +A TRVS TT +P L+ T AI+ S +N RP S +SP+ T Sbjct: 1 MRGAALCTRVSSTTL---NPVTLQ-TSAIYQTISLKNQTRPSSTSTVRFLKASPTLRTSS 56 Query: 369 LQGERRCRT 343 + + + T Sbjct: 57 ARPQAQIAT 65
>LEU3_DEBHA (Q6B458) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 382 Score = 29.3 bits (64), Expect = 7.8 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 13/86 (15%) Frame = +2 Query: 209 HLRGGAGDDGTCSKLP------APVADALV-------HYAASNVTPQQTAAEIGVSLRVL 349 HL GGA D T + LP A +DA++ + +V P+Q +I L + Sbjct: 56 HLIGGAAIDATGTPLPDESLEAAKNSDAVLLGAVGGPKWGTGSVRPEQGLLKIRKELNLY 115 Query: 350 QRRSPCNFLVFGLGLDSPMWAALNHG 427 PCNF L SP+ + + G Sbjct: 116 ANLRPCNFASDSLLELSPLKSEIVKG 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,405,259 Number of Sequences: 219361 Number of extensions: 908158 Number of successful extensions: 2956 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2952 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
