Clone Information

BLAST Search Result

Clone Name	bart30h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MYBB_XENLA (P52551) Myb-related protein B (B-Myb) (Myb-related p...	37	0.032
2	TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG r...	35	0.16
3	MYBB_HUMAN (P10244) Myb-related protein B (B-Myb)	34	0.27
4	MIER1_PONPY (Q5REE1) Mesoderm induction early response protein 1...	34	0.35
5	MIER1_HUMAN (Q8N108) Mesoderm induction early response protein 1...	34	0.35
6	MIER1_MOUSE (Q5UAK0) Mesoderm induction early response protein 1...	34	0.35
7	MIER1_CHICK (Q5ZKT9) Mesoderm induction early response protein 1...	34	0.35
8	MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1...	34	0.35
9	MYBB_MOUSE (P48972) Myb-related protein B (B-Myb)	33	0.46
10	MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcrip...	33	0.60
11	TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repe...	33	0.60
12	BZLF1_EBV (P03206) Trans-activator protein BZLF1 (EB1) (Zebra)	33	0.79
13	KBTBB_MOUSE (Q8BNW9) Kelch repeat and BTB domain-containing prot...	33	0.79
14	ARR10_ARATH (O49397) Two-component response regulator ARR10 (Rec...	32	1.0
15	YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I	32	1.3
16	ADA2_HUMAN (O75478) Transcriptional adapter 2-like (ADA2-like pr...	32	1.3
17	CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-de...	31	2.3
18	ARR21_ARATH (Q9LYP5) Putative two-component response regulator A...	31	2.3
19	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	31	2.3
20	ARR20_ARATH (Q9LZJ8) Putative two-component response regulator A...	31	2.3
21	RMT2_GIBZE (Q4IQK7) Arginine N-methyltransferase 2 (EC 2.1.1.-)	31	3.0
22	MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)	31	3.0
23	MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb)	31	3.0
24	MYB_MOUSE (P06876) Myb proto-oncogene protein (C-myb)	31	3.0
25	MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)	31	3.0
26	NGCA_CHICK (Q03696) Neuronal-glial cell adhesion molecule precur...	31	3.0
27	MYBB_CHICK (Q03237) Myb-related protein B (B-Myb)	31	3.0
28	TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG r...	31	3.0
29	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	25	3.0
30	ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain i...	30	3.9
31	TERF1_MOUSE (P70371) Telomeric repeat-binding factor 1 (TTAGGG r...	30	3.9
32	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	27	4.6
33	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	30	5.1
34	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	30	5.1
35	GRP2_PHAVU (P10496) Glycine-rich cell wall structural protein 1....	30	6.7
36	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	30	6.7
37	ADA2B_RAT (P19328) Alpha-2B adrenergic receptor (Alpha-2B adreno...	30	6.7
38	MYB_AVIMB (P01104) Transforming protein Myb	30	6.7
39	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	30	6.7
40	PDC6I_MOUSE (Q9WU78) Programmed cell death 6-interacting protein...	25	8.0
41	ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain I...	29	8.7
42	SOCS7_MOUSE (Q8VHQ2) Suppressor of cytokine signaling 7 (SOCS-7)	29	8.7
43	MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1	29	8.7
44	PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacema...	24	10.0

>MYBB_XENLA (P52551) Myb-related protein B (B-Myb) (Myb-related protein 1)|
           (XMYB1)
          Length = 743

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +1

Query: 325 QERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQTNPN 504
           +E +  V WT EE  T  A ++K G+G+W+ IA N +  RT  Q     Q  +LR  +P+
Sbjct: 26  KENRVKVKWTPEEDETLKALVKKHGQGEWKTIASN-LNNRTEQQ----CQHRWLRVLHPD 80

Query: 505 KKK 513
             K
Sbjct: 81  LVK 83

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>TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 500

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 337 KAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNF 432
           K   WT EE     AG++K G+G+W  I+KN+
Sbjct: 446 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 477

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>MYBB_HUMAN (P10244) Myb-related protein B (B-Myb)|
          Length = 700

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +1

Query: 325 QERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQTNPN 504
           ++ K  V WT EE     A + + G+ DW+ +A +F     P +     Q  +LR  NP+
Sbjct: 26  RDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-----PNRTDQQCQYRWLRVLNPD 80

Query: 505 KKK 513
             K
Sbjct: 81  LVK 83

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>MIER1_PONPY (Q5REE1) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 512

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVA--------SHAQKYFL 486
           R++   WTEEE R F  GL+  GK D+  I  N V TR+  +          S    +F 
Sbjct: 282 REELSVWTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFA 340

Query: 487 RQTNPNKKK 513
           +QT   KKK
Sbjct: 341 QQTRFGKKK 349

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>MIER1_HUMAN (Q8N108) Mesoderm induction early response protein 1 (Mi-er1)|
           (hmi-er1) (Early response 1) (Er1)
          Length = 536

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVA--------SHAQKYFL 486
           R++   WTEEE R F  GL+  GK D+  I  N V TR+  +          S    +F 
Sbjct: 306 REELSVWTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFA 364

Query: 487 RQTNPNKKK 513
           +QT   KKK
Sbjct: 365 QQTRFGKKK 373

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>MIER1_MOUSE (Q5UAK0) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 556

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVA--------SHAQKYFL 486
           R++   WTEEE R F  GL+  GK D+  I  N V TR+  +          S    +F 
Sbjct: 326 REELSVWTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFA 384

Query: 487 RQTNPNKKK 513
           +QT   KKK
Sbjct: 385 QQTRFGKKK 393

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>MIER1_CHICK (Q5ZKT9) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 513

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVA--------SHAQKYFL 486
           R++   WTEEE R F  GL+  GK D+  I  N V TR+  +          S    +F 
Sbjct: 284 REELSVWTEEECRNFEQGLKVYGK-DFHVIQANKVRTRSVGECVAFYYMWKKSERYDFFA 342

Query: 487 RQTNPNKKK 513
           +QT   KKK
Sbjct: 343 QQTRFGKKK 351

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>MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1 (Mi-er1)|
           (Xmi-er1) (Early response 1) (Er1)
          Length = 495

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVA--------SHAQKYFL 486
           R++   WTEEE R F  GL+  GK D+  I  N V TR+  +          S    +F 
Sbjct: 273 REELSVWTEEECRNFEQGLKAYGK-DFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFA 331

Query: 487 RQTNPNKKK 513
           +QT   KKK
Sbjct: 332 QQTRFGKKK 340

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>MYBB_MOUSE (P48972) Myb-related protein B (B-Myb)|
          Length = 704

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 325 QERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQTNPN 504
           ++ +  V WT EE     A + + G+ DW+ +A +F     P +     Q  +LR  NP+
Sbjct: 26  RDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-----PNRTDQQCQYRWLRVLNPD 80

Query: 505 KKK 513
             K
Sbjct: 81  LVK 83

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>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor|
           RLTR1)
          Length = 257

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 337 KAVPWTEEEHRTFLAGLEKLGKGDWRGIAK 426
           K  PWT EE +  +A +++ G G+WR + K
Sbjct: 13  KKGPWTPEEDKVLVAHIQRHGHGNWRALPK 42

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>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)|
           (Fragment)
          Length = 336

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +3

Query: 36  GAGRRDASRFAPARDAPLRRHHCAGAGAALGSPGR*PGSEPQPTGGGEGGRDAQVQEHGQ 215
           G GR  A+R   A + P      A AGAA GS G   GS  + T  G  GR    +  G+
Sbjct: 26  GGGRERAARSREAGEGPASEAAAAAAGAASGSSGE-NGSAGRQTAAGCHGRHEACEARGR 84

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>BZLF1_EBV (P03206) Trans-activator protein BZLF1 (EB1) (Zebra)|
          Length = 245

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 218 WPPSPQPVPPGTLEARATGTSPTAAFCSRP 307
           WP  P+P+P G L A    T+PT ++ S P
Sbjct: 49  WPVLPEPLPQGQLTAYHVSTAPTGSWFSAP 78

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>KBTBB_MOUSE (Q8BNW9) Kelch repeat and BTB domain-containing protein 11|
          Length = 633

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 75  RDAPLRRHHCAGAG----AALGSPGR*PGSEPQ-PTGGGEGGRDAQV 200
           RD  LRR  C G      AALG+ G   GS PQ P+G  E   DA V
Sbjct: 287 RDLLLRRRLCTGRACLLAAALGTTGERSGSRPQSPSGDAESRGDAAV 333

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>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like|
           protein 4)
          Length = 552

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +1

Query: 328 ERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNF-----VTTRTPTQVASHAQKY 480
           ++K  V WT E H  FLA ++ LG    R + K       V   T   VASH QK+
Sbjct: 181 QKKPRVLWTHELHNKFLAAVDHLGVE--RAVPKKILDLMNVDKLTRENVASHLQKF 234

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>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I|
          Length = 390

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 310 KRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGI---AKNFVTTRTPTQV 459
           +R+  + RK  V WTE+E    L G +  G G+W+ I    +   T R+P  +
Sbjct: 45  ERKPTKVRKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDL 97

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>ADA2_HUMAN (O75478) Transcriptional adapter 2-like (ADA2-like protein)|
          Length = 443

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 349 WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFL 486
           WT +E    L  +   G G+W+ +A N + T+T  +   H  K+F+
Sbjct: 75  WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKHFI 119

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>CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-dependent helicase|
            CHD1)
          Length = 1468

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 349  WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQT-NPNKKKRRSS 525
            WT+EE    L G+ K G G W  I  +               K FL +  NP  KK  SS
Sbjct: 1175 WTKEEDEKLLIGVFKYGYGSWTQIRDD--------PFLGITDKIFLNEVHNPVAKKSASS 1226

Query: 526  LFDMMASDLSPAPN 567
                  SD +P P+
Sbjct: 1227 ------SDTTPTPS 1234

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>ARR21_ARATH (Q9LYP5) Putative two-component response regulator ARR21|
          Length = 592

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 307 GKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNF-----VTTRTPTQVASHA 471
           G+      +KK + WT+  H  FL  +  +G    + + K       V   T   VASH 
Sbjct: 213 GESMSQPAKKKKIQWTDSLHDLFLQAIRHIGLD--KAVPKKILAFMSVPYLTRENVASHL 270

Query: 472 QKY--FLRQ 492
           QKY  FLR+
Sbjct: 271 QKYRIFLRR 279

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/60 (35%), Positives = 22/60 (36%)
 Frame = +3

Query: 9   Q*NATAPLVGAGRRDASRFAPARDAPLRRHHCAGAGAALGSPGR*PGSEPQPTGGGEGGR 188
           Q     P  G G R      P R A   R    G G   G  GR  G   +P GGG  GR
Sbjct: 287 QGGGAGPRPGGGPRPNPGMMPQRPAAGPRPGPGGGGRGPGGAGRPGGGGGRPGGGGFAGR 346

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>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20|
          Length = 426

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +1

Query: 310 KRRRAQERKKAVPWTEEEHRTFLAGLEKLG---KGDWRGIAKNF-----VTTRTPTQVAS 465
           K  ++  +K  + WT E H  F   +EK+G   K   + I K       V   T   VAS
Sbjct: 203 KEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVAS 262

Query: 466 HAQKY 480
           H QKY
Sbjct: 263 HLQKY 267

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>RMT2_GIBZE (Q4IQK7) Arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 425

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 343 VPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVT 438
           V W  EE    ++GLEK G+G+W G+ + + T
Sbjct: 389 VEW--EESDVDMSGLEKAGEGEWEGVRRRYWT 418

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>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 304 AGKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQK 477
           +GKR   + R     WT EE       +E+ G  DW+ IA N++  RT  Q     QK
Sbjct: 33  SGKRHLGKTR-----WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 84

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>MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 304 AGKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQK 477
           +GKR   + R     WT EE       +E+ G  DW+ IA N++  RT  Q     QK
Sbjct: 33  SGKRHLGKTR-----WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 84

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>MYB_MOUSE (P06876) Myb proto-oncogene protein (C-myb)|
          Length = 636

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 304 AGKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQK 477
           +GKR   + R     WT EE       +E+ G  DW+ IA N++  RT  Q     QK
Sbjct: 33  SGKRHLGKTR-----WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 84

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>MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)|
          Length = 641

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +1

Query: 304 AGKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQK 477
           AGKR   + R     WT EE       +E+ G  DW+ IA +F+  RT  Q     QK
Sbjct: 33  AGKRHLGKTR-----WTREEDEKLKKLVEQNGTEDWKVIA-SFLPNRTDVQCQHRWQK 84

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>NGCA_CHICK (Q03696) Neuronal-glial cell adhesion molecule precursor (Ng-CAM)|
          Length = 1266

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 105  AGAGAALGSPGR*P---GSEPQPTGGGEGGRDAQVQEHG 212
            +GAG+ +GSPGR P   GSE    G G G  D Q  E G
Sbjct: 1201 SGAGSGVGSPGRGPCAAGSEDSLAGYG-GSGDVQFNEDG 1238

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>MYBB_CHICK (Q03237) Myb-related protein B (B-Myb)|
          Length = 686

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 343 VPWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQTNPNKKK 513
           V WT+EE       +   G+ DW+ +A +F     P +     Q  +LR  NP+  K
Sbjct: 32  VKWTQEEDEQLKMLVRHYGQNDWKFLASHF-----PNRSDQQCQYRWLRVLNPDLVK 83

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>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 495

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 298 QSAGKRRRAQERKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNF 432
           Q+ G+ R +   +K   WT EE      G+ K G+G+W  I+K++
Sbjct: 429 QAPGEDRSSSLTRKQ-KWTIEESEWVKDGVRKYGEGNWAAISKSY 472

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>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 25.4 bits (54), Expect(2) = 3.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 135 GR*PGSEPQPTGGGEGG 185
           GR PG+ P   GGG GG
Sbjct: 183 GRPPGARPPHRGGGRGG 199



 Score = 23.9 bits (50), Expect(2) = 3.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 7   PNKTPPPHSSEPAAGMPQDSRPPGMR 84
           P + PPP   E         RPPG R
Sbjct: 164 PRRLPPPPPGEQPPSGSGHGRPPGAR 189

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>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC|
           3.6.1.-)
          Length = 1009

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 349 WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLR 489
           WT+ E + F+ G EK G+ D   IAK     R   ++ S+A+ ++ R
Sbjct: 802 WTKREFQQFVRGNEKYGREDLESIAKEM--ERPLEEIQSYAKVFWER 846

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>TERF1_MOUSE (P70371) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding|
           factor 1)
          Length = 421

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 331 RKKAVPWTEEEHRTFLAGLEKLGKGDWRGIAKNF 432
           R+K   W  EE R    G++K G+G+W  I  ++
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHY 397

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 26.6 bits (57), Expect(2) = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 144  PGSEPQPTGGGEGG 185
            P ++P+PTGGG GG
Sbjct: 1181 PPTQPEPTGGGGGG 1194



 Score = 21.9 bits (45), Expect(2) = 4.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 200  ARAWATWPPSPQPVP 244
            A A +  PPSP PVP
Sbjct: 1201 APAMSPVPPSPSPVP 1215

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
 Frame = +3

Query: 18  ATAPLVGAGRRDASRFAPAR-------DAPLRRHHCAGAGAALGSPGR*PGSEPQPTGGG 176
           A AP   A   ++ RFA AR         P RR    G GAA   PG  P + P P G G
Sbjct: 5   AAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAA---PGPYPSAAPPPPGPG 61

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
 Frame = +1

Query: 334 KKAVP------WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQT 495
           KK VP      WTE+E + F+ GL + GK  +R I K  + ++   ++ +    Y+ ++T
Sbjct: 385 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR-IRKELLPSKETGELITF--YYYWKKT 441

Query: 496 ------NPNKKKRRSSLFDMMASDLSPAP-NCPILP 582
                   +++ RR ++F  + +  +  P N P  P
Sbjct: 442 PEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRP 477

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>GRP2_PHAVU (P10496) Glycine-rich cell wall structural protein 1.8 precursor|
           (GRP 1.8)
          Length = 465

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 108 GAGAALGSPGR*PGSEPQPTGGGEGGRDAQVQEHG 212
           GAG   G+ G   G      GGG GG  A V EHG
Sbjct: 304 GAGGGYGAGGEHGGGGGGGQGGGAGGGYAAVGEHG 338

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
 Frame = +1

Query: 334 KKAVP------WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQT 495
           KK VP      WTE+E + F+ GL + GK  +R I K  +  +   ++ +    Y+ ++T
Sbjct: 385 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR-IRKELLPNKETGELITF--YYYWKKT 441

Query: 496 ------NPNKKKRRSSLFDMMASDLSPAP-NCPILP 582
                   +++ RR ++F  + +  +  P N P  P
Sbjct: 442 PEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRP 477

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>ADA2B_RAT (P19328) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor)
          Length = 453

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 90  RRHHCAGAGAALGSPGR*PGSEPQPTGGG 176
           +R HC G GA  GS G     +PQP  GG
Sbjct: 205 KRSHCRGLGAKRGS-GEGESKKPQPVAGG 232

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>MYB_AVIMB (P01104) Transforming protein Myb|
          Length = 382

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 346 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQTNPNKKK 513
           PWT+EE +  +  ++K G   W  IAK+        ++    ++ +    NP  KK
Sbjct: 23  PWTKEEDQRVIEHVQKYGPKRWSDIAKHL-----KGRIGKQCRERWHNHLNPEVKK 73

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
 Frame = +1

Query: 334 KKAVP------WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQT 495
           KK VP      WTE+E + F+ GL + GK  +R I K  +  +   ++ +    Y+ ++T
Sbjct: 384 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR-IRKELLPNKETGELITF--YYYWKKT 440

Query: 496 ------NPNKKKRRSSLFDMMASDLSPAP-NCPILP 582
                   +++ RR ++F  + +  +  P N P  P
Sbjct: 441 PEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRP 476

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>PDC6I_MOUSE (Q9WU78) Programmed cell death 6-interacting protein|
           (ALG-2-interacting protein X) (ALG-2-interacting protein
           1) (E2F1-inducible protein) (Eig2)
          Length = 869

 Score = 25.4 bits (54), Expect(2) = 8.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 54  ASRFAPARDAPLRRHHCAGAGAALGSPGR*PGSEPQPTGGG 176
           A+R  PA  A       AG G A  +P + PGS P P   G
Sbjct: 765 ANRVPPASAAAAP----AGVGTASAAPPQTPGSAPPPQAQG 801



 Score = 22.3 bits (46), Expect(2) = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 1   TSPNKTPPPHSSEPAAG 51
           ++P+  PP + S PAAG
Sbjct: 718 SAPSIPPPAYQSSPAAG 734

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>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC|
           3.6.1.-) (Protein imitation swi) (Nucleosome remodeling
           factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa
           subunit)
          Length = 1027

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 349 WTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKYFLRQT 495
           WT+ +   F+   EK G+ D   IAK+ V  +TP +V  +   ++ R T
Sbjct: 800 WTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWERCT 847

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>SOCS7_MOUSE (Q8VHQ2) Suppressor of cytokine signaling 7 (SOCS-7)|
          Length = 579

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 214 CPCSCTCASRPPSPPPVGWGSDPGHRP 134
           CPC C     PP PPP       G  P
Sbjct: 81  CPCPCPPQPPPPQPPPPAAAPQAGEDP 107

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>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1|
          Length = 324

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 346 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQ 456
           PW+  E +  +  ++ LG G+W  +A+  + TRTP Q
Sbjct: 11  PWSAGEDQRLIKLVKDLGPGNWVNVAR-ILGTRTPKQ 46

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>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 24.3 bits (51), Expect(2) = 10.0
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
 Frame = +3

Query: 102  CAGAGAALGSPGR*P----------GSEPQPTGGGEGG 185
            C   G+++  PG             G EP   GGGEGG
Sbjct: 1201 CVDCGSSVQDPGHSDDPLFSELDGLGLEPMEEGGGEGG 1238



 Score = 23.1 bits (48), Expect(2) = 10.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 168  GGGEGGRDAQVQ 203
            GGG+GG +AQ Q
Sbjct: 1245 GGGDGGEEAQTQ 1256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,939,484
Number of Sequences: 219361
Number of extensions: 1687970
Number of successful extensions: 6854
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 5376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6826
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result