ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR696000.2|CNS0FZZG Tetraodon nigroviridis full-length cDNA 42 1.9
2emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chr... 42 1.9
3gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock prote... 42 1.9
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
5dbj|AK102021.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
6ref|NM_188654.1| Oryza sativa (japonica cultivar-group), Ozsa825... 40 7.5
7ref|XM_601949.2| PREDICTED: Bos taurus hypothetical LOC523647 (L... 40 7.5
8emb|CR855369.3| Chicken DNA sequence from clone WAG-89C18, compl... 40 7.5
9ref|XM_505457.1| Yarrowia lipolytica CLIB122, YALI0F15433g predi... 40 7.5
10emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 40 7.5
11emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.5
12emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 40 7.5
13emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 40 7.5
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
15dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
16dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
17dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 7.5
18gb|L78720.1|HUMFGFRB Human fibroblast growth factor receptor 3 (... 40 7.5
19emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 7.5

>emb|CR696000.2|CNS0FZZG Tetraodon nigroviridis full-length cDNA
          Length = 894

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  ccgccggctgcgtcttcttcc 72
           |||||||||||||||||||||
Sbjct: 117 ccgccggctgcgtcttcttcc 137



to top

>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete
             sequence
          Length = 129844

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   tccagctccagcatcgccact 342
             |||||||||||||||||||||
Sbjct: 57314 tccagctccagcatcgccact 57334



to top

>gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA,
            complete cds
          Length = 2278

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 128  cggaggaagccgagccactcg 148
            |||||||||||||||||||||
Sbjct: 1232 cggaggaagccgagccactcg 1212



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 438      cacagaagacactcgcttaacttgccagagcat 470
                |||||||||  ||| ||||||||||||||||||
Sbjct: 18814550 cacagaagattctcacttaacttgccagagcat 18814582



to top

>dbj|AK102021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J10, full
           insert sequence
          Length = 2426

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 438 cacagaagacactcgcttaacttgccagagcat 470
           |||||||||  ||| ||||||||||||||||||
Sbjct: 784 cacagaagattctcacttaacttgccagagcat 816



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 384 tcgccgcgattctcctactgcaagccta 411
           ||||| ||||||||||||||||| ||||
Sbjct: 733 tcgccacgattctcctactgcaaaccta 760



to top

>ref|NM_188654.1| Oryza sativa (japonica cultivar-group), Ozsa8257 predicted mRNA
          Length = 180

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gtgccggcgccgccggccgg 130
           ||||||||||||||||||||
Sbjct: 117 gtgccggcgccgccggccgg 136



to top

>ref|XM_601949.2| PREDICTED: Bos taurus hypothetical LOC523647 (LOC523647), mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  gccggccatggagagggccc 243
            ||||||||||||||||||||
Sbjct: 1587 gccggccatggagagggccc 1606



to top

>emb|CR855369.3| Chicken DNA sequence from clone WAG-89C18, complete sequence
          Length = 112938

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   caaaatgctacacagaagac 447
             ||||||||||||||||||||
Sbjct: 59016 caaaatgctacacagaagac 59035



to top

>ref|XM_505457.1| Yarrowia lipolytica CLIB122, YALI0F15433g predicted mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 tccggccactcctccggcaa 319
           ||||||||||||||||||||
Sbjct: 846 tccggccactcctccggcaa 827



to top

>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
             alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
             end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cagctccagcatcgccactc 343
             ||||||||||||||||||||
Sbjct: 44301 cagctccagcatcgccactc 44282



to top

>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gtgccggcgccgccggccgg 130
              ||||||||||||||||||||
Sbjct: 265161 gtgccggcgccgccggccgg 265142



to top

>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   gtgccggcgccgccggccgg 130
             ||||||||||||||||||||
Sbjct: 56200 gtgccggcgccgccggccgg 56181



to top

>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gtgccggcgccgccggccgg 130
              ||||||||||||||||||||
Sbjct: 118655 gtgccggcgccgccggccgg 118636



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 111     gtgccggcgccgccggccgg 130
               ||||||||||||||||||||
Sbjct: 7456038 gtgccggcgccgccggccgg 7456057



to top

>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0702F03
          Length = 141111

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    gtgccggcgccgccggccgg 130
              ||||||||||||||||||||
Sbjct: 117066 gtgccggcgccgccggccgg 117085



to top

>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0708G02
          Length = 168976

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  gtgccggcgccgccggccgg 130
            ||||||||||||||||||||
Sbjct: 4830 gtgccggcgccgccggccgg 4849



to top

>dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-52H4, complete
             sequence
          Length = 114288

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cagagcatgctgaggacacg 364
             ||||||||||||||||||||
Sbjct: 70252 cagagcatgctgaggacacg 70271



to top

>gb|L78720.1|HUMFGFRB Human fibroblast growth factor receptor 3 (FGFR3) gene, exon 1
          Length = 1553

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  ccggcgccgccggccggagg 133
            ||||||||||||||||||||
Sbjct: 995  ccggcgccgccggccggagg 1014



to top

>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 300     tccggccactcctccggcaa 319
               ||||||||||||||||||||
Sbjct: 2082831 tccggccactcctccggcaa 2082850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,261,220
Number of Sequences: 3902068
Number of extensions: 4261220
Number of successful extensions: 69606
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69408
Number of HSP's gapped (non-prelim): 198
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top