Clone Name | bart30g12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR696000.2|CNS0FZZG Tetraodon nigroviridis full-length cDNA Length = 894 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 ccgccggctgcgtcttcttcc 72 ||||||||||||||||||||| Sbjct: 117 ccgccggctgcgtcttcttcc 137
>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete sequence Length = 129844 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 tccagctccagcatcgccact 342 ||||||||||||||||||||| Sbjct: 57314 tccagctccagcatcgccact 57334
>gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2278 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cggaggaagccgagccactcg 148 ||||||||||||||||||||| Sbjct: 1232 cggaggaagccgagccactcg 1212
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 438 cacagaagacactcgcttaacttgccagagcat 470 ||||||||| ||| |||||||||||||||||| Sbjct: 18814550 cacagaagattctcacttaacttgccagagcat 18814582
>dbj|AK102021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J10, full insert sequence Length = 2426 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 438 cacagaagacactcgcttaacttgccagagcat 470 ||||||||| ||| |||||||||||||||||| Sbjct: 784 cacagaagattctcacttaacttgccagagcat 816 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 384 tcgccgcgattctcctactgcaagccta 411 ||||| ||||||||||||||||| |||| Sbjct: 733 tcgccacgattctcctactgcaaaccta 760
>ref|NM_188654.1| Oryza sativa (japonica cultivar-group), Ozsa8257 predicted mRNA Length = 180 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 117 gtgccggcgccgccggccgg 136
>ref|XM_601949.2| PREDICTED: Bos taurus hypothetical LOC523647 (LOC523647), mRNA Length = 2010 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gccggccatggagagggccc 243 |||||||||||||||||||| Sbjct: 1587 gccggccatggagagggccc 1606
>emb|CR855369.3| Chicken DNA sequence from clone WAG-89C18, complete sequence Length = 112938 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 caaaatgctacacagaagac 447 |||||||||||||||||||| Sbjct: 59016 caaaatgctacacagaagac 59035
>ref|XM_505457.1| Yarrowia lipolytica CLIB122, YALI0F15433g predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tccggccactcctccggcaa 319 |||||||||||||||||||| Sbjct: 846 tccggccactcctccggcaa 827
>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 182653 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cagctccagcatcgccactc 343 |||||||||||||||||||| Sbjct: 44301 cagctccagcatcgccactc 44282
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 265161 gtgccggcgccgccggccgg 265142
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 56200 gtgccggcgccgccggccgg 56181
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 118655 gtgccggcgccgccggccgg 118636
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 7456038 gtgccggcgccgccggccgg 7456057
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 117066 gtgccggcgccgccggccgg 117085
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gtgccggcgccgccggccgg 130 |||||||||||||||||||| Sbjct: 4830 gtgccggcgccgccggccgg 4849
>dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-52H4, complete sequence Length = 114288 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 cagagcatgctgaggacacg 364 |||||||||||||||||||| Sbjct: 70252 cagagcatgctgaggacacg 70271
>gb|L78720.1|HUMFGFRB Human fibroblast growth factor receptor 3 (FGFR3) gene, exon 1 Length = 1553 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ccggcgccgccggccggagg 133 |||||||||||||||||||| Sbjct: 995 ccggcgccgccggccggagg 1014
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tccggccactcctccggcaa 319 |||||||||||||||||||| Sbjct: 2082831 tccggccactcctccggcaa 2082850 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,261,220 Number of Sequences: 3902068 Number of extensions: 4261220 Number of successful extensions: 69606 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69408 Number of HSP's gapped (non-prelim): 198 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)