ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATG13_EMENI (Q5BBK4) Autophagy-related protein 13 30 5.6

>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13|
          Length = 974

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +1

Query: 28  PPNADASSPHLTSPQPTHHQRASSDVSHRQ 117
           P NA+ SSP+  SP+PT   R SS  SHR+
Sbjct: 496 PDNAN-SSPNSASPRPTPMSRYSSAFSHRR 524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,020,725
Number of Sequences: 219361
Number of extensions: 434356
Number of successful extensions: 1050
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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