ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30f03 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 128 bits (322), Expect = 1e-29 Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 1/139 (0%) Frame = +2 Query: 203 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVIAGTSTGALVASM 379 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 380 LAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVNGPKYDGXFLHDK 559 + P E RP AKDI FY ++GPKIF G++ GPKYDG +L Sbjct: 86 ITTPNETNRPFAAAKDIVPFYFEHGPKIFQSS------------GSIFGPKYDGKYLMQV 133 Query: 560 IKSLTHDVTIAQTVTNIIV 616 ++ + + Q +T + + Sbjct: 134 LQEKLGETRVHQALTEVAI 152
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 128 bits (321), Expect = 2e-29 Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 121 Query: 524 GPKYDGXFLHDKIKSLTHDVTIAQTVTNIIV 616 GP+YDG +L ++ + + Q +T + + Sbjct: 122 GPRYDGKYLLQVLQEKLGETRVHQALTEVAI 152
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 124 bits (312), Expect = 2e-28 Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 112 Query: 524 GPKYDGXFLHDKIKSLTHDVTIAQTVTNIIV 616 GP+YDG +L ++ + + Q +T + + Sbjct: 113 GPRYDGKYLLQVLQEKLGETRVHQALTEVAI 143
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 123 bits (309), Expect = 4e-28 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSII 121 Query: 524 GPKYDGXFLHDKIKSLTHDVTIAQTVTNIIV 616 GP YDG +L ++ + + Q +T + + Sbjct: 122 GPMYDGKYLLQVLQEKLGETRVHQALTEVAI 152
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 123 bits (309), Expect = 4e-28 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIL 121 Query: 524 GPKYDGXFLHDKIKSLTHDVTIAQTVTNIIV 616 GP YDG +L ++ + + Q +T + + Sbjct: 122 GPMYDGKYLLQVLQEKLGETRVHQALTEVAI 152
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GLI +L +E D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 31.2 bits (69), Expect = 2.6 Identities = 34/133 (25%), Positives = 52/133 (39%) Frame = +2 Query: 221 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAAPGEN 400 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA---- 52 Query: 401 KRPLFQAKDINKFYLDNGPKIFPQRSWGFLAPIGNLFGAVNGPKYDGXFLHDKIKSLTHD 580 D+ + K F +R L+ PK G D+++ L H Sbjct: 53 ------GHDVAT--MKKVAKAFKRR----------LYADYTVPKL-GFLKGDRVRQLVHA 93 Query: 581 VTIAQTVTNIIVP 619 T + + + +P Sbjct: 94 YTFGKPIEELQIP 106
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -3 Query: 517 GAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLAG 389 G ++ P WG+E P L E P + D L E PLV+AG Sbjct: 452 GPKEAPPWGKEQPLHL-EPSPPASPTQSPDNLTCTETPLVIAG 493
>RPOZ_MYCTU (P66721) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -3 Query: 541 AVVLGTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 A+V+ A Q+ D+ + + EY+GP+VE GL+E+PL +A Sbjct: 52 ALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>RPOZ_MYCBO (P66722) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -3 Query: 541 AVVLGTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 A+V+ A Q+ D+ + + EY+GP+VE GL+E+PL +A Sbjct: 52 ALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>Y924_EHRRG (Q5FGP9) UPF0054 protein ERGA_CDS_09240| Length = 157 Score = 29.6 bits (65), Expect = 7.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 523 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 416 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>Y882_EHRRW (Q5HA01) UPF0054 protein Erum8820/ERWE_CDS_09330| Length = 157 Score = 29.6 bits (65), Expect = 7.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 523 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 416 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 7.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 192 GGQVTHVGAWPWLHMVSLAPSHCS 121 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 7.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 149 MCSHGHAPTCVTCPPPSQGQLITV 220 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>AMPA_SYMTH (Q67NI4) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 491 Score = 29.6 bits (65), Expect = 7.5 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Frame = -3 Query: 529 GTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLAGGRQHGRDQRAGAR 350 G +HG ++PDW E P EV+ V +LG E G +HGR G Sbjct: 126 GALHGLFRLPDWKSEKK--------PRPEVEAVHILGGER----AREGAEHGRIVAEGVN 173 Query: 349 --------PGDHVEVVR 323 PG+H+ + Sbjct: 174 LARALAWTPGNHLTAAK 190
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -1 Query: 423 LAWKSGRLFSPGAASMDATSAPVLVPAITSK*SAMRASGPSSSWSLDSRQ 274 L W RL P AS T P P+ S + + + GPS WSL R+ Sbjct: 1487 LQWPPPRLPGPPPASPAPTEGPR--PSRPSGPALLNSEGPSGKWSLGGRK 1534
>YK69_YEAST (P36165) Hypothetical 102.7 kDa protein in PRP16-SRP40 intergenic| region Length = 910 Score = 29.3 bits (64), Expect = 9.8 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Frame = +2 Query: 215 TVLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAAPG 394 T L + GGG GL +L L ELD VI+G+S GA+VAS+L+ Sbjct: 280 TALVLSGGGTFGLFHIGVLGTLF----ELDLLPR-------VISGSSAGAIVASILSVHH 328 Query: 395 ENKRPLFQAKDINK---FYLDNGPKIFPQRSWGFLAPIGNLFGAVNGPKYDGXFLHDKIK 565 + + P+ ++K + D+ K S L I F NG +D L + + Sbjct: 329 KEEIPVLLNHILDKEFNIFKDDKQK---SESENLLIKISRFF--KNGTWFDNKHLVNTMI 383 Query: 566 SLTHDVTIAQ 595 D+T + Sbjct: 384 EFLGDLTFRE 393 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,197,620 Number of Sequences: 219361 Number of extensions: 1251550 Number of successful extensions: 4443 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4429 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
