ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30e12 |
|---|---|
| Clone Library Name | barley_pub |
>VE2_HPV49 (P36795) Regulatory protein E2| Length = 488 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +1 Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTASRSRFMARRKQRRR 519 S P S +S RRSRSRT T + + SRS+ +R + R R Sbjct: 266 SSPTAASNSRKEVSRRRSRSRTRTRRREASTSRSQKASRSRSRSR 310
>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) (Fragment) Length = 1048 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 430 RRSRSRTPTHAQTPTASRSRFMARRKQRRRGR 525 R+SRSR+P ++ + SRSR R+ R R R Sbjct: 350 RKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSR 381
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 400 KRKSPGMLSWR-RSRSRTPTHAQTPTASRSRFMARRKQRRR 519 +++SP R RSRSR+P+H++ RSR R RRR Sbjct: 276 RQRSPTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRR 316 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%) Frame = +1 Query: 382 PSLPAGKRKSPGMLSWR-------RSRSRTPTHAQTPTASRSRFMARRKQRRRGR 525 P +P K SP S + ++R R+PT +++ + SRSR + + RRR R Sbjct: 250 PPVPETKEISPERNSKKEREKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPRRRHR 304
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 29.3 bits (64), Expect = 7.0 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +1 Query: 400 KRKSPGMLSWRRSRSRTPTHAQTPTASRSRFMARRKQRRRGR 525 +R++P RRSRSR+ + + + SR R + R++R R Sbjct: 257 RRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSR 298
>VE2_HPV24 (P50770) Regulatory protein E2| Length = 467 Score = 29.3 bits (64), Expect = 7.0 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 19/71 (26%) Frame = +1 Query: 370 TSCPPSLPAGKRKSPGMLSWRRSRSRTPT-------------------HAQTPTASRSRF 492 +S PP P G R+ PG S S++ +PT +PT SR R Sbjct: 200 SSTPPDSPGGSRELPG--STANSKASSPTQQPQQACSDETTKRKRYGRRESSPTDSRCRR 257 Query: 493 MARRKQRRRGR 525 + +Q+++GR Sbjct: 258 RSSSRQKKQGR 268
>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 665 Score = 28.9 bits (63), Expect = 9.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 432 AVAEPDPDARPDTDGEQKPFHGEEEAAKA 518 AV + D D D DGE P H + +AA+A Sbjct: 168 AVGDGDGDGDADADGEDDPGHWDADAAEA 196
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -1 Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101 T+AA + ++ VRRTA G +S+VVS TR Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 28.9 bits (63), Expect = 9.1 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%) Frame = +1 Query: 385 SLPAGKRKSPGMLSWRRS-----RSRTPTHAQTPTASRSRFMARR----KQRRRGR 525 S+ G+R+S + RRS RSRTP+ + RSR +RR +RRR R Sbjct: 1925 SISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSR 1980
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +1 Query: 382 PSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTASRSRFMARRKQRRR 519 P P +R P M R RSR+P ++P RSR ARR+ R R Sbjct: 236 PPPPMWRRSPPRM----RRRSRSPRR-RSPVRRRSRSPARRRHRSR 276
>K1240_HUMAN (Q9ULI0) Protein KIAA1240 (Fragment)| Length = 733 Score = 28.9 bits (63), Expect = 9.1 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 433 RSRSRTPTHAQTPTASRSRFMARRKQRRRGRW 528 R + R P +A++ F RRK RRR +W Sbjct: 388 RHKQRNPMDVWHNSANKCAFRVRRKSRRRSQW 419
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 382 PSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTASRSR 489 P++PA R S RSRS++P+ + + + SRSR Sbjct: 447 PNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482
>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1073 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +3 Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395 G H G SG + D P DVVPTE AR Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWAR 554
>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)| (BR140 protein) Length = 1214 Score = 28.9 bits (63), Expect = 9.1 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +1 Query: 394 AGKRKSPGMLSWRRSRSRTPTHAQTPTA-SRSRFMARRKQRRRGR 525 AG K PG R TP+H +P + M+ +QR+RGR Sbjct: 902 AGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGR 946
>UL06_HHV11 (P10190) Virion protein UL6| Length = 676 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/49 (34%), Positives = 20/49 (40%) Frame = +1 Query: 379 PPSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTASRSRFMARRKQRRRGR 525 PP P G PG RSRSR+P + + R RR GR Sbjct: 627 PPPSPVGADFRPGASPRGRSRSRSPGRTARGAPDQGGGIGHRDGRRDGR 675 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,023,619 Number of Sequences: 219361 Number of extensions: 744653 Number of successful extensions: 3542 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3334 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
