ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 1.5
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.5
3dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 38 1.5
4dbj|AP004442.1| Cottus reinii mitochondrial DNA, complete genome 38 1.5
5gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 36 5.7
6ref|XM_568542.1| Cryptococcus neoformans var. neoformans JEC21 v... 36 5.7
7gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome... 36 5.7
8gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosom... 36 5.7
9emb|AL627343.16| Mouse DNA sequence from clone RP23-382J14 on ch... 36 5.7
10emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on ch... 36 5.7
11gb|AC024032.5| Homo sapiens BAC clone RP11-196J14 from 4, comple... 36 5.7
12dbj|AK155414.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 36 5.7
13ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP... 36 5.7
14emb|AJ332912.1|HSA332912 Homo sapiens genomic sequence surroundi... 36 5.7
15emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8... 36 5.7
16emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-9... 36 5.7

>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete
             sequence
          Length = 191358

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     agacccagcccaaacaacc 23
             |||||||||||||||||||
Sbjct: 33436 agacccagcccaaacaacc 33418



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 11       agcccaaacaaccctctcc 29
                |||||||||||||||||||
Sbjct: 27502214 agcccaaacaaccctctcc 27502232



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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    agcccaaacaaccctctcc 29
             |||||||||||||||||||
Sbjct: 66185 agcccaaacaaccctctcc 66203



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>dbj|AP004442.1| Cottus reinii mitochondrial DNA, complete genome
          Length = 16561

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    ctagacccagcccaaacaa 21
            |||||||||||||||||||
Sbjct: 4080 ctagacccagcccaaacaa 4062



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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 12     gcccaaacaaccctctcc 29
              ||||||||||||||||||
Sbjct: 320814 gcccaaacaaccctctcc 320797



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>ref|XM_568542.1| Cryptococcus neoformans var. neoformans JEC21 vacuolar membrane
            protein (CNN01020) partial mRNA
          Length = 3219

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   gcccaaacaaccctctcc 29
            ||||||||||||||||||
Sbjct: 3187 gcccaaacaaccctctcc 3170



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>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence
          Length = 232320

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     acccagcccaaacaaccc 24
             ||||||||||||||||||
Sbjct: 11280 acccagcccaaacaaccc 11297



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>gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosome 18, complete sequence
          Length = 184836

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      acccagcccaaacaaccc 24
              ||||||||||||||||||
Sbjct: 138172 acccagcccaaacaaccc 138189



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>emb|AL627343.16| Mouse DNA sequence from clone RP23-382J14 on chromosome 11, complete
            sequence
          Length = 121496

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    ctagacccagcccaaaca 20
            ||||||||||||||||||
Sbjct: 1274 ctagacccagcccaaaca 1257



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>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a
              prohibitin (Phb) pseudogene and a novel gene, complete
              sequence
          Length = 213383

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      ctagacccagcccaaaca 20
              ||||||||||||||||||
Sbjct: 212657 ctagacccagcccaaaca 212640



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>gb|AC024032.5| Homo sapiens BAC clone RP11-196J14 from 4, complete sequence
          Length = 177038

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     acccagcccaaacaaccc 24
             ||||||||||||||||||
Sbjct: 52159 acccagcccaaacaaccc 52176



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>dbj|AK155414.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630225M09
           product:unclassifiable, full insert sequence
          Length = 764

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 7   acccagcccaaacaaccc 24
           ||||||||||||||||||
Sbjct: 442 acccagcccaaacaaccc 459



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>ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508
          (LOC498559), mRNA
          Length = 1111

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 27 tccgcttccggcccgagg 44
          ||||||||||||||||||
Sbjct: 79 tccgcttccggcccgagg 62



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>emb|AJ332912.1|HSA332912 Homo sapiens genomic sequence surrounding NotI site, clone
          NR5-KD10C
          Length = 626

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 16 aaacaaccctctccgctt 33
          ||||||||||||||||||
Sbjct: 56 aaacaaccctctccgctt 39



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>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166894

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     aaacaaccctctccgctt 33
              ||||||||||||||||||
Sbjct: 155261 aaacaaccctctccgctt 155278



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>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200540

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    aaacaaccctctccgctt 33
             ||||||||||||||||||
Sbjct: 12284 aaacaaccctctccgctt 12301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,894
Number of Sequences: 3902068
Number of extensions: 236894
Number of successful extensions: 67918
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67873
Number of HSP's gapped (non-prelim): 45
length of query: 46
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 26
effective length of database: 17,155,003,908
effective search space: 446030101608
effective search space used: 446030101608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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