ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 70 3e-12
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 66 8e-11
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 43 5e-04
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 41 0.002
5LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglyc... 33 0.56
6STK36_MOUSE (Q69ZM6) Serine/threonine-protein kinase 36 (EC 2.7.... 33 0.73
7HIS8_METAC (Q8TUE9) Histidinol-phosphate aminotransferase (EC 2.... 31 2.8
8RSUA_SALTY (P65840) Ribosomal small subunit pseudouridine syntha... 30 6.2
9RSUA_SALTI (P65841) Ribosomal small subunit pseudouridine syntha... 30 6.2
10HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.... 30 6.2
11SP3_CHICK (Q90WR8) Transcription factor Sp3 29 8.1

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
 Frame = +1

Query: 166 RLVNAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLP-GRPTGRFTNGYNLADVISQRL 342
           + + AV+ FGDS+ D GNN+ L        RPYGMD P G  TGRF+NG   +D IS+ L
Sbjct: 121 KTIPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYL 180

Query: 343 GFEMSPKPYL--SMLPHDKILLGLCKIGANYASGGSGILDTTGKG--TLTMRTQVQYFK 507
           G +     Y+   +  ++++       G ++ASGG+G L  T +     TM  Q+ YF+
Sbjct: 181 GVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSESWKVTTMLDQLTYFQ 239



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
 Frame = +1

Query: 166 RLVNAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGR-PTGRFTNGYNLADVISQRL 342
           + + AV+ FGDS+ D GNN+ L        RPYGMD   R  TGRF+NG   +D +++ +
Sbjct: 200 KTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYM 259

Query: 343 GFEMSPKPYL--SMLPHDKILLGLCKIGANYASGGSGILDTTGK--GTLTMRTQVQYFK 507
           G +     YL   + P+D +       G ++ASGG+G   TT +    + M  Q+ YF+
Sbjct: 260 GVKEIVPAYLDPKIQPNDLL------TGVSFASGGAGYNPTTSEAANAIPMLDQLTYFQ 312



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 33/91 (36%), Positives = 45/91 (49%)
 Frame = +1

Query: 178 AVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMS 357
           A++ FGDS  D G    L A   +A  P+G    G P GR+ +G  + D I++ LG    
Sbjct: 30  AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLGL--- 83

Query: 358 PKPYLSMLPHDKILLGLCKIGANYASGGSGI 450
             PYLS    D +       GAN+A+ GS I
Sbjct: 84  --PYLSAF-LDSVGSNFSH-GANFATAGSPI 110



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = +1

Query: 178 AVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMS 357
           A++ FGDS  D G       P    N PYG     R TGR+++G  + D I++       
Sbjct: 34  AIFNFGDSNSDTGGKAAAFYPL---NPPYGETFFHRSTGRYSDGRLIIDFIAESFNL--- 87

Query: 358 PKPYLSMLPHDKILLGLCKIGANYASGGSGI-LDTT 462
             PYLS  P+   L    K GA++A+ GS I L TT
Sbjct: 88  --PYLS--PYLSSLGSNFKHGADFATAGSTIKLPTT 119



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>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 645

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = +1

Query: 175 NAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNG-----YNLADVISQR 339
           N +YVFGDSL D GNN                   GR T    NG     YN  D I+Q+
Sbjct: 26  NNLYVFGDSLSDGGNN-------------------GRYTVDGINGTESKLYN--DFIAQQ 64

Query: 340 LGFEMSPKPYLSMLPHDKILLGLCKIGANYASGGS 444
           LG E               L+   K G NYA+GG+
Sbjct: 65  LGIE---------------LVNSKKGGTNYAAGGA 84



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>STK36_MOUSE (Q69ZM6) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1268

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  PLPLASYHSHSESLQQRPWRGALL 94
           PL L  Y   S S+QQ+PW GALL
Sbjct: 470 PLSLLRYSQESSSIQQQPWYGALL 493



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>HIS8_METAC (Q8TUE9) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 367

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +1

Query: 199 SLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMSPKPYLSM 378
           S++ +G+N+    P+P+A R      PG       +   L +V+S+  GF +S     S 
Sbjct: 39  SIIKLGSNENPLGPSPKAVRALVETAPGANIYPSADARELREVLSKYTGFPVS-NIVASG 97

Query: 379 LPHDKILLGLCKI 417
              D +L GLC+I
Sbjct: 98  PGMDGLLDGLCRI 110



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>RSUA_SALTY (P65840) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 345 FRDEPQAVPLHAAARQDLTRP----LQDWRQLRFRWIRHPRHHGKRDAHDADTSPVLQEG 512
           F DEP A  LHAA R D+       + D  Q   R I  PRHH ++       SPV  + 
Sbjct: 86  FLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR-ITSPRHHCEKTYLVTLESPVADDT 144

Query: 513 GGQ 521
             Q
Sbjct: 145 AAQ 147



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>RSUA_SALTI (P65841) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 345 FRDEPQAVPLHAAARQDLTRP----LQDWRQLRFRWIRHPRHHGKRDAHDADTSPVLQEG 512
           F DEP A  LHAA R D+       + D  Q   R I  PRHH ++       SPV  + 
Sbjct: 86  FLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR-ITSPRHHCEKTYLVTLESPVADDT 144

Query: 513 GGQ 521
             Q
Sbjct: 145 AAQ 147



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>HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 368

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +1

Query: 196 DSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMSPKPYLS 375
           +S++ +G+N+    P+P+A +      PG       + + L + +S+  GF +S     S
Sbjct: 39  ESIIKLGSNENPLGPSPKAVKALIEAAPGANIYPSADAHELREALSKYTGFPVS-NIVAS 97

Query: 376 MLPHDKILLGLCKI 417
               D +L GLC+I
Sbjct: 98  GPGMDGLLDGLCRI 111



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>SP3_CHICK (Q90WR8) Transcription factor Sp3|
          Length = 771

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 450 PRHHGKRDAHDADTSPVLQEGGGQHDLLPKQEEHL 554
           P   GKR    A T P  +EGGG+   L K+++H+
Sbjct: 578 PHQEGKRLRRVACTCPNCKEGGGRGSNLGKKKQHI 612


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,227,702
Number of Sequences: 219361
Number of extensions: 1306018
Number of successful extensions: 4518
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4508
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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