ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30c12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 757 bits (382), Expect = 0.0 Identities = 495/534 (92%), Gaps = 14/534 (2%) Strand = Plus / Plus Query: 27 atccattctgccttgaggaaattgtctgaacctttcctccacttactagtcttt-----c 81 ||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| | Sbjct: 8 atccattttgccttggagaaattgtttgaacctttcctccacttactagcctttttcttc 67 Query: 82 ttcctccccattgctgccatgagggcgcctgtggcgttctttgcatggtgcgccctcctc 141 |||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 68 ttcctccccattgctgccatgagggctc---------tctttgcatggtgcgccctcctc 118 Query: 142 ttggcgtgtggcggcctgctgcattgcgcggaggcggccaaggccaggcacctcaagtgg 201 |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 ttggcgtgcggcggcgtgatgcattgcgcggaggcggccaaggccaggcacctcaagtgg 178 Query: 202 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 238 Query: 262 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 298 Query: 322 aagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacagattgga 381 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 299 aagaacgggctgcacaccgagggcgtcgtcatccactggcacggcgtcagacagattgga 358 Query: 382 acaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaaccccgaggaaacc 441 || || |||||||| |||||||| || |||||||| |||||||||||||| || |||||| Sbjct: 359 acgccatgggcggacggcacggccgccatctcccagtgcgccatcaacccggaagaaacc 418 Query: 442 ttcacttaccgatttgtcgtcgacaagccggggacatatttctaccatgggcactacggc 501 |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 419 ttcacttatcgattcgtcgtcgacaagccggggacatacttctaccacgggcactacggc 478 Query: 502 atgcagagggcggcagggctgtacggctctctgatcgtggatgtggcagatggg 555 |||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 479 atgcagagggcggcggggctgtacggctctctgatcgtggatgtggcggatggg 532
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 274 bits (138), Expect = 3e-70 Identities = 192/210 (91%) Strand = Plus / Plus Query: 166 tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 225 ||||||| |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||| Sbjct: 21545604 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 21545663 Query: 226 ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 285 ||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||| Sbjct: 21545664 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 21545723 Query: 286 cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 345 || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct: 21545724 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 21545783 Query: 346 gtggtcatccactggcacggcgtcagacag 375 || |||||||||||||||||| |||||||| Sbjct: 21545784 gtcgtcatccactggcacggcatcagacag 21545813 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 371 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 430 ||||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 21546070 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 21546129 Query: 431 ccgaggaaaccttcacttaccgatttgtcgtcgacaag 468 | || ||||||||||| || || || || ||||||||| Sbjct: 21546130 ctgaagaaaccttcacctatcgcttcgttgtcgacaag 21546167 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 467 agccggggacatatttctaccatgggcactacggcatgcagagggcggcagggctgtacg 526 |||||||||| || |||||||| || |||||||| |||||||||||||| |||||||||| Sbjct: 21546533 agccggggacgtacttctaccacggccactacgggatgcagagggcggcggggctgtacg 21546592 Query: 527 gctctctgatcgtgga 542 | || ||||||||||| Sbjct: 21546593 ggtcgctgatcgtgga 21546608 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 332 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 375 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 21603707 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 21603750 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acctttcctccacttactagtcttt 80 ||||||||||||||||||| ||||| Sbjct: 21545447 acctttcctccacttactactcttt 21545471
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 274 bits (138), Expect = 3e-70 Identities = 192/210 (91%) Strand = Plus / Plus Query: 166 tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 225 ||||||| |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||| Sbjct: 102788 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 102847 Query: 226 ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 285 ||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||| Sbjct: 102848 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 102907 Query: 286 cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 345 || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct: 102908 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 102967 Query: 346 gtggtcatccactggcacggcgtcagacag 375 || |||||||||||||||||| |||||||| Sbjct: 102968 gtcgtcatccactggcacggcatcagacag 102997 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 371 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 430 ||||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 103254 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 103313 Query: 431 ccgaggaaaccttcacttaccgatttgtcgtcgacaag 468 | || ||||||||||| || || || || ||||||||| Sbjct: 103314 ctgaagaaaccttcacctatcgcttcgttgtcgacaag 103351 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 467 agccggggacatatttctaccatgggcactacggcatgcagagggcggcagggctgtacg 526 |||||||||| || |||||||| || |||||||| |||||||||||||| |||||||||| Sbjct: 103717 agccggggacgtacttctaccacggccactacgggatgcagagggcggcggggctgtacg 103776 Query: 527 gctctctgatcgtgga 542 | || ||||||||||| Sbjct: 103777 ggtcgctgatcgtgga 103792 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 332 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 375 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 160891 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 160934 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acctttcctccacttactagtcttt 80 ||||||||||||||||||| ||||| Sbjct: 102631 acctttcctccacttactactcttt 102655
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 332 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 391 ||||||||||||| || |||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 327 tgcacaccgagggcgtcgtcatccactggcacggcatcagacagtttggcacgccgtggg 386 Query: 392 cggatggcacggcggcgatctcccaatgcgc 422 |||| || ||||| |||| ||||| ||||| Sbjct: 387 cggacgggacggcatcgatatcccagtgcgc 417
>dbj|AB004799.1| Oryza sativa mRNA for ascorbate oxidase, partial cds Length = 1245 Score = 79.8 bits (40), Expect = 9e-12 Identities = 78/91 (85%) Strand = Plus / Plus Query: 332 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 391 ||||||||||||| || ||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 266 tgcacaccgagggcgtcgtcatccactggcacggnatcagacagtttggtacgccgtggg 325 Query: 392 cggatggcacggcggcgatctcccaatgcgc 422 |||| || ||||| |||| ||||| ||||| Sbjct: 326 cggacgggacggcatcgatatcccagtgcgc 356
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 332 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 375 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 2638 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 2681
>gb|AF206723.1|AF206723 Brassica juncea isolate BJAO3 ascorbate oxidase mRNA, partial cds Length = 2007 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| | ||||||||||||||||||||||||||||| Sbjct: 328 aagccgggaacacacttctaccatgggcactacggcatgcagag 371
>gb|AF206722.1|AF206722 Brassica juncea isolate BJAO2 ascorbate oxidase mRNA, partial cds Length = 1920 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| | ||||||||||||||||||||||||||||| Sbjct: 332 aagccgggaacacacttctaccatgggcactacggcatgcagag 375
>ref|NM_147871.1| Arabidopsis thaliana L-ascorbate oxidase/ copper ion binding AT5G21105 mRNA, complete cds Length = 2053 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 343 aagccgggaacacatttctaccatggacactatggcatgcagag 386
>gb|BT001074.1| Arabidopsis thaliana At5g21100/T10F18_130 mRNA, complete cds Length = 1593 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 217 aagccgggaacacatttctaccatggacactatggcatgcagag 260
>gb|BT000738.1| Arabidopsis thaliana At5g21105 mRNA sequence Length = 2137 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 368 aagccgggaacacatttctaccatggacactatggcatgcagag 411
>gb|BT000672.1| Arabidopsis thaliana At5g21105 mRNA sequence Length = 2168 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 365 aagccgggaacacatttctaccatggacactatggcatgcagag 408
>gb|AY057577.1| Arabidopsis thaliana At5g21105 mRNA sequence Length = 2148 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 365 aagccgggaacacatttctaccatggacactatggcatgcagag 408
>gb|AY050406.1| Arabidopsis thaliana AT5g21100/T10F18_130 mRNA, complete cds Length = 2074 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 361 aagccgggaacacatttctaccatggacactatggcatgcagag 404
>emb|BX829850.1|CNS0A02W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2033 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 329 aagccgggaacacatttctaccatggacactatggcatgcagag 372
>dbj|AB004798.1| Arabidopsis thaliana mRNA for ascorbate oxidase, partial cds Length = 2113 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 466 aagccggggacatatttctaccatgggcactacggcatgcagag 509 |||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 330 aagccgggaacacatttctaccatggacactatggcatgcagag 373
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence Length = 112600 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 467 agccggggacatatttctaccatgggcactacggcatgcagag 509 ||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 101201 agccgggaacacatttctaccatggacactatggcatgcagag 101159 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 470 cggggacatatttctaccatgggcactacggcatgca 506 |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 105660 cgggaacacatttctaccatggacactacggaatgca 105624
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 467 agccggggacatatttctaccatgggcactacggcatgcagag 509 ||||||| ||| ||||||||||||| ||||| ||||||||||| Sbjct: 36287 agccgggaacacatttctaccatggacactatggcatgcagag 36245 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 470 cggggacatatttctaccatgggcactacggcatgca 506 |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 40746 cgggaacacatttctaccatggacactacggaatgca 40710
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 351 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 403 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 240 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 292
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 351 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 403 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 11981068 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 11981016 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 295 gccggcgacaccatcgtcgtcg 316 |||||||||||||||||||||| Sbjct: 22000386 gccggcgacaccatcgtcgtcg 22000407
>gb|AF233594.2|AF233594 Cucumis melo ascorbate oxidase AO4 mRNA, complete cds Length = 2122 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 439 accttcacttaccgatttgtcgtcgacaagccggggacatatttctaccatgg 491 |||||||||||||| ||||| || || ||| | |||||||||||||| ||||| Sbjct: 461 accttcacttaccggtttgtggtagataaggctgggacatatttctatcatgg 513
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 351 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 403 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 85548 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 85496
>gb|J04494.1|CUSASCO Cucumber ascorbate oxidase (aso) mRNA, complete cds Length = 2153 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 439 accttcacttaccgatttgtcgtcgacaagccggggacatatttctaccatgg 491 |||||||||||||| ||||| || || ||| | |||||||||||||| ||||| Sbjct: 414 accttcacttaccggtttgtggtagataaggctgggacatatttctatcatgg 466
>dbj|D43624.1|TOBTAOP Tobacco mRNA for ascorbate oxidase precursor, complete cds Length = 2065 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 371 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 430 ||||||| |||||||| ||||| ||||| || || || || |||||||||||||| |||| Sbjct: 362 gacagatcggaacaccatgggctgatggaactgcagcaatttcccaatgcgccattaacc 421 Query: 431 c 431 | Sbjct: 422 c 422
>gb|AF206721.1|AF206721 Brassica juncea isolate BJAO1 ascorbate oxidase mRNA, partial cds Length = 1841 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 470 cggggacatatttctaccatgggcactacggcatgcagag 509 |||| ||| ||||||||||||| |||||||| |||||||| Sbjct: 358 cgggaacacatttctaccatggacactacgggatgcagag 397
>ref|NM_122118.4| Arabidopsis thaliana copper ion binding AT5G21100 mRNA, complete cds Length = 2059 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 460 gtcgacaagccggggacatatttctaccatgggcactacggcatgca 506 ||||| ||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 471 gtcgataaggcgggaacacatttctaccatggacactacggaatgca 517
>gb|AY099586.1| Arabidopsis thaliana ascorbate oxidase-like protein (At5g21100) mRNA, complete cds Length = 1995 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 460 gtcgacaagccggggacatatttctaccatgggcactacggcatgca 506 ||||| ||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 457 gtcgataaggcgggaacacatttctaccatggacactacggaatgca 503
>emb|BX829653.1|CNS0A09E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZG08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2002 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 460 gtcgacaagccggggacatatttctaccatgggcactacggcatgca 506 ||||| ||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 471 gtcgataaggcgggaacacatttctaccatggacactacggaatgca 517
>gb|BT003407.1| Arabidopsis thaliana ascorbate oxidase-like protein (At5g21100) mRNA, complete cds Length = 1861 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 460 gtcgacaagccggggacatatttctaccatgggcactacggcatgca 506 ||||| ||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 343 gtcgataaggcgggaacacatttctaccatggacactacggaatgca 389
>ref|NM_120146.3| Arabidopsis thaliana copper ion binding AT4G39830 mRNA, complete cds Length = 2082 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>gb|BT015885.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1749 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 220 gacaccatcgttgtcgagctcaagaa 245
>gb|BT015360.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1915 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 383 gacaccatcgttgtcgagctcaagaa 408
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92 Length = 112067 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 6341 gacaccatcgttgtcgagctcaagaa 6366
>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project) Length = 118267 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 16908 gacaccatcgttgtcgagctcaagaa 16933
>emb|AL022605.3|ATT19P19 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project) Length = 88343 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 82462 gacaccatcgttgtcgagctcaagaa 82487
>gb|AC159331.9| Mus musculus 10 BAC RP23-218E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186300 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 ccacttactagtctttcttcct 86 |||||||||||||||||||||| Sbjct: 18205 ccacttactagtctttcttcct 18184
>emb|BX827889.1|CNS0A49W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1943 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 gacaccatcgtcgtcgagctcaagaa 326 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 295 gccggcgacaccatcgtcgtcg 316 |||||||||||||||||||||| Sbjct: 42450 gccggcgacaccatcgtcgtcg 42471
>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20, complete sequence Length = 166153 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 499 ggcatgcagagggcggcagggctgta 524 |||||||||| ||||||||||||||| Sbjct: 8001 ggcatgcagaaggcggcagggctgta 8026
>gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176618 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 ccacttactagtctttcttcct 86 |||||||||||||||||||||| Sbjct: 50345 ccacttactagtctttcttcct 50366
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 284 tccgggccaaggccggcgacaccatcgtcg 313 |||||||||||||||||||| | ||||||| Sbjct: 23383 tccgggccaaggccggcgacgcgatcgtcg 23412
>gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mRNA, complete cds Length = 1984 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 370 agacagattggaacaccgtgggcggatgg 398 ||||||||||||||||| ||||| ||||| Sbjct: 352 agacagattggaacaccatgggctgatgg 380
>ref|XM_361698.1| Magnaporthe grisea 70-15 hypothetical protein (MG04172.4) partial mRNA Length = 2406 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gggcggatggcacggcggcga 409 ||||||||||||||||||||| Sbjct: 1320 gggcggatggcacggcggcga 1340
>gb|DQ470894.1| Leptosphaeria maculans isolate AFTOL-ID 277 RNA polymerase II subunit 2 (RPB2) gene, partial sequence Length = 1675 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgacaccatcgtcgtcgagct 320 ||||||||||||||||||||| Sbjct: 1325 cgacaccatcgtcgtcgagct 1305
>emb|Y15295.1|MTY15295 Medicago truncatula mRNA for L-ascorbate oxidase Length = 2058 Score = 42.1 bits (21), Expect = 1.9 Identities = 57/69 (82%) Strand = Plus / Plus Query: 475 acatatttctaccatgggcactacggcatgcagagggcggcagggctgtacggctctctg 534 ||||||||||| ||||| ||||| || ||||| || || |||||| |||| || ||||| Sbjct: 404 acatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctcta 463 Query: 535 atcgtggat 543 || |||||| Sbjct: 464 atagtggat 472
>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence Length = 205753 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 tctttcttcctccccattgct 96 ||||||||||||||||||||| Sbjct: 178015 tctttcttcctccccattgct 178035
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 caaggccggcgacaccatcgt 311 ||||||||||||||||||||| Sbjct: 2520182 caaggccggcgacaccatcgt 2520162
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 cgacaccatcgtcgtcgagctcaag 324 |||||||||||||||| |||||||| Sbjct: 2469684 cgacaccatcgtcgtcaagctcaag 2469660
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gccaaggccggcgacaccatcgtcg 313 |||||||||||||||| |||||||| Sbjct: 4034665 gccaaggccggcgacagcatcgtcg 4034641
>dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein B13-1-1, partial cds Length = 1945 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 catccactggcacggcgtcagacagattggaac 383 ||||||||||||||| | |||||||||||||| Sbjct: 240 catccactggcacgggataagacagattggaac 272
>gb|AF107805.1|AF107805 Sporormiella minima DNA-dependent RNA polymerase II RPB140 (RPB2) gene, partial cds Length = 2811 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgacaccatcgtcgtcgagct 320 ||||||||||||||||||||| Sbjct: 2116 cgacaccatcgtcgtcgagct 2096
>ref|XM_366417.1| Magnaporthe grisea 70-15 hypothetical protein (MG10635.4) partial mRNA Length = 4869 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ggcgcctgtggcgttctttgcatg 128 |||||| ||||||||||||||||| Sbjct: 2717 ggcgccggtggcgttctttgcatg 2694
>ref|XM_985757.1| PREDICTED: Mus musculus gene model 804, (NCBI), transcript variant 2 (Gm804), mRNA Length = 662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gcagagggcggcagggctgt 523 |||||||||||||||||||| Sbjct: 594 gcagagggcggcagggctgt 613
>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete sequence Length = 199956 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gcagagggcggcagggctgt 523 |||||||||||||||||||| Sbjct: 23018 gcagagggcggcagggctgt 23037
>ref|XM_897942.2| PREDICTED: Mus musculus gene model 804, (NCBI), transcript variant 2 (Gm804), mRNA Length = 662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gcagagggcggcagggctgt 523 |||||||||||||||||||| Sbjct: 594 gcagagggcggcagggctgt 613
>gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, complete sequence Length = 188819 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gcagagggcggcagggctgt 523 |||||||||||||||||||| Sbjct: 132918 gcagagggcggcagggctgt 132937
>emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chromosome 9, complete sequence Length = 85997 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cttcctccccattgctgcca 100 |||||||||||||||||||| Sbjct: 26974 cttcctccccattgctgcca 26955
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ccggcgacaccatcgtcgtc 315 |||||||||||||||||||| Sbjct: 237163 ccggcgacaccatcgtcgtc 237182
>gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, complete sequence Length = 144328 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gagaaggtgctcatcggcat 257 |||||||||||||||||||| Sbjct: 48456 gagaaggtgctcatcggcat 48475
>gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, complete sequence Length = 156545 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 atccattctgccttgaggaa 46 |||||||||||||||||||| Sbjct: 32682 atccattctgccttgaggaa 32663
>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence Length = 201564 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atccattctgccttgaggaa 46 |||||||||||||||||||| Sbjct: 29022 atccattctgccttgaggaa 29041
>dbj|AK136846.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330128C21 product:similar to C14ORF29 variant 2 [Homo sapiens], full insert sequence Length = 3029 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gcagagggcggcagggctgt 523 |||||||||||||||||||| Sbjct: 598 gcagagggcggcagggctgt 617
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 aggccggcgacaccatcgtc 312 |||||||||||||||||||| Sbjct: 5835752 aggccggcgacaccatcgtc 5835771
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gccggcgacaccatcgtcgt 314 |||||||||||||||||||| Sbjct: 4837900 gccggcgacaccatcgtcgt 4837919
>gb|AF233593.1|AF233593 Cucumis melo ascorbate oxidase AO1 mRNA, complete cds Length = 2046 Score = 40.1 bits (20), Expect = 7.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 440 ccttcacttaccgatttgtcgtcgacaagccggggacatatttctaccatgg 491 |||||||||||| || || || || ||||| |||||||||||||| ||||| Sbjct: 443 ccttcacttaccagttcgtagtagataagcctgggacatatttctatcatgg 494
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 caaggccggcgacaccatcg 310 |||||||||||||||||||| Sbjct: 122896 caaggccggcgacaccatcg 122915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,910,567 Number of Sequences: 3902068 Number of extensions: 3910567 Number of successful extensions: 71248 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70425 Number of HSP's gapped (non-prelim): 822 length of query: 555 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 532 effective length of database: 17,143,297,704 effective search space: 9120234378528 effective search space used: 9120234378528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
