Clone Name | bart30c06 |
---|---|
Clone Library Name | barley_pub |
>SELT_ARATH (Q9STZ2) SelT-like protein precursor| Length = 209 Score = 130 bits (328), Expect = 2e-30 Identities = 69/154 (44%), Positives = 85/154 (55%), Gaps = 1/154 (0%) Frame = +2 Query: 113 MDRVQXXXXXXXXXXFCSDVVTLFAPQPPAAPKPHRHPQPTSGAFXXXXXXXXXXXXXXX 292 MD+ Q CSD+ LF P PP + +H P S Sbjct: 1 MDKTQLILLGLPIFLLCSDLFNLFTPPPPKS----QHQSPPS--------ISETLDFPAQ 48 Query: 293 XXXGPGTGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVP 472 G G G TVE+ FC SCSYKG A++MK+ML++ FPG+ VVL NYP P PKR L K+VP Sbjct: 49 KSTGVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVP 108 Query: 473 FVQVGAIATLMAGDQIFPRFGMV-PPPWYYSLRA 571 QVG I +M G+QIFP G+ PP WY+SLRA Sbjct: 109 VAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRA 142
>HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory protein 6| precursor Length = 244 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/78 (28%), Positives = 40/78 (51%) Frame = +2 Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIATL 502 V+ FC SC Y+ ++L +PGI + ENYPP + +++ V++ I + Sbjct: 83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142 Query: 503 MAGDQIFPRFGMVPPPWY 556 ++G FP G+ P ++ Sbjct: 143 VSGRSPFPTLGLETPTFF 160
>SELT_DROME (Q9VMV6) SelT-like protein precursor| Length = 198 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/90 (25%), Positives = 40/90 (44%) Frame = +2 Query: 302 GPGTGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQ 481 G T+ +C SC Y+ +L +P I V NY PP L KM+ ++ Sbjct: 37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALK 96 Query: 482 VGAIATLMAGDQIFPRFGMVPPPWYYSLRA 571 + I ++++ F G+ P W+ ++A Sbjct: 97 IIIIVSVVSAVSPFTFLGLNTPSWWSHMQA 126
>SELT_MOUSE (P62342) Selenoprotein T precursor| Length = 195 Score = 39.7 bits (91), Expect = 0.006 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +2 Query: 311 TGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGA 490 TG ++ + C SC Y+ R++ +P I + ENY P R + + ++ Sbjct: 37 TGPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVL 96 Query: 491 IATLMAGDQIFPRFGMVPP 547 I ++ G F FGM P Sbjct: 97 IGLIIVGKDPFAFFGMQAP 115
>SELT_HUMAN (P62341) Selenoprotein T precursor| Length = 195 Score = 39.7 bits (91), Expect = 0.006 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +2 Query: 311 TGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGA 490 TG ++ + C SC Y+ R++ +P I + ENY P R + + ++ Sbjct: 37 TGPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVL 96 Query: 491 IATLMAGDQIFPRFGMVPP 547 I ++ G F FGM P Sbjct: 97 IGLIIVGKDPFAFFGMQAP 115
>SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor| Length = 247 Score = 37.4 bits (85), Expect = 0.031 Identities = 18/76 (23%), Positives = 34/76 (44%) Frame = +2 Query: 320 TVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIAT 499 T+ + +C SC YK +P + + N+ P K + + + FV++ + Sbjct: 86 TLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVL 145 Query: 500 LMAGDQIFPRFGMVPP 547 ++ G F RFG+ P Sbjct: 146 VLGGINPFERFGLGYP 161
>SELT2_CAEEL (Q19892) Putative selT-like protein F28H7.4 precursor| Length = 232 Score = 36.6 bits (83), Expect = 0.052 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = +2 Query: 335 FCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIATLMAGD 514 F SC YK +PG+ + N+ P F K L ++V ++G IA ++ G Sbjct: 92 FSVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIVITGS 151 Query: 515 QIFPRFGMVPP 547 F G P Sbjct: 152 NPFEYIGFGYP 162
>SEPW1_PIG (Q95KL4) Selenoprotein W| Length = 86 Score = 33.1 bits (74), Expect = 0.58 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 314 GTTVELKFCASCSYKGNAMTMKRMLDTSFPG 406 G V + +C +C YK + +K+ L+ FPG Sbjct: 1 GVAVRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>SEPW1_MACMU (P63303) Selenoprotein W| Length = 86 Score = 30.8 bits (68), Expect = 2.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPG 406 V + +C +C YK + +K+ L+ FPG Sbjct: 4 VRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>SEPW1_HUMAN (P63302) Selenoprotein W| Length = 86 Score = 30.8 bits (68), Expect = 2.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPG 406 V + +C +C YK + +K+ L+ FPG Sbjct: 4 VRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>GID_RHOPA (Q6N5Z1) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 478 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +2 Query: 413 VVLENYPPPFPKRALGKMVPFVQVGAIATLMAGDQIFP----RFGMVPP 547 +V ++ PP P ALG ++ + G I T+ AG + F FG+ PP Sbjct: 381 LVGQSLAPPPPTTALGALLGHITGGHIETIDAGPRSFQPMNINFGLFPP 429
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 29.6 bits (65), Expect = 6.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 185 APQPPAAPKPHRHPQPTSGAF 247 AP P AP PH HP P + AF Sbjct: 279 APPPGPAPHPHPHPHPHAFAF 299
>GID_RHOCA (O68141) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 445 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 431 PPPFPKRALGKMVPFVQVGAIATLMAGDQIFPRFGMVPP 547 PPP P+ A+G +V + GA+A + FG+ PP Sbjct: 375 PPPGPETAMGALVNHITGGAVAKTFQPMNV--NFGLFPP 411
>FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide| hydrolase) (Anandamide amidohydrolase) Length = 579 Score = 29.3 bits (64), Expect = 8.3 Identities = 25/80 (31%), Positives = 33/80 (41%) Frame = +2 Query: 314 GTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAI 493 G V LK C S YKG+A T+ L+ V E+ L VPFV Sbjct: 136 GVPVSLKECFS--YKGHASTLGLSLNEG-----VTSESDCVVVQVLKLQGAVPFVHTNVP 188 Query: 494 ATLMAGDQIFPRFGMVPPPW 553 ++++ D P FG PW Sbjct: 189 QSMLSYDCSNPLFGQTMNPW 208 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,599,815 Number of Sequences: 219361 Number of extensions: 1037008 Number of successful extensions: 4140 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3423 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4100 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)