ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SELT_ARATH (Q9STZ2) SelT-like protein precursor 130 2e-30
2HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory pro... 50 5e-06
3SELT_DROME (Q9VMV6) SelT-like protein precursor 40 0.004
4SELT_MOUSE (P62342) Selenoprotein T precursor 40 0.006
5SELT_HUMAN (P62341) Selenoprotein T precursor 40 0.006
6SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor 37 0.031
7SELT2_CAEEL (Q19892) Putative selT-like protein F28H7.4 precursor 37 0.052
8SEPW1_PIG (Q95KL4) Selenoprotein W 33 0.58
9SEPW1_MACMU (P63303) Selenoprotein W 31 2.9
10SEPW1_HUMAN (P63302) Selenoprotein W 31 2.9
11GID_RHOPA (Q6N5Z1) tRNA uridine 5-carboxymethylaminomethyl modif... 30 6.4
12FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related p... 30 6.4
13GID_RHOCA (O68141) tRNA uridine 5-carboxymethylaminomethyl modif... 29 8.3
14FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Ole... 29 8.3

>SELT_ARATH (Q9STZ2) SelT-like protein precursor|
          Length = 209

 Score =  130 bits (328), Expect = 2e-30
 Identities = 69/154 (44%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
 Frame = +2

Query: 113 MDRVQXXXXXXXXXXFCSDVVTLFAPQPPAAPKPHRHPQPTSGAFXXXXXXXXXXXXXXX 292
           MD+ Q           CSD+  LF P PP +    +H  P S                  
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPPKS----QHQSPPS--------ISETLDFPAQ 48

Query: 293 XXXGPGTGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVP 472
              G G G TVE+ FC SCSYKG A++MK+ML++ FPG+ VVL NYP P PKR L K+VP
Sbjct: 49  KSTGVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVP 108

Query: 473 FVQVGAIATLMAGDQIFPRFGMV-PPPWYYSLRA 571
             QVG I  +M G+QIFP  G+  PP WY+SLRA
Sbjct: 109 VAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRA 142



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>HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory protein 6|
           precursor
          Length = 244

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +2

Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIATL 502
           V+  FC SC Y+       ++L   +PGI +  ENYPP   +    +++  V++  I  +
Sbjct: 83  VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142

Query: 503 MAGDQIFPRFGMVPPPWY 556
           ++G   FP  G+  P ++
Sbjct: 143 VSGRSPFPTLGLETPTFF 160



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>SELT_DROME (Q9VMV6) SelT-like protein precursor|
          Length = 198

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +2

Query: 302 GPGTGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQ 481
           G     T+   +C SC Y+        +L   +P I V   NY PP     L KM+  ++
Sbjct: 37  GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALK 96

Query: 482 VGAIATLMAGDQIFPRFGMVPPPWYYSLRA 571
           +  I ++++    F   G+  P W+  ++A
Sbjct: 97  IIIIVSVVSAVSPFTFLGLNTPSWWSHMQA 126



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>SELT_MOUSE (P62342) Selenoprotein T precursor|
          Length = 195

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 311 TGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGA 490
           TG  ++ + C SC Y+       R++   +P I +  ENY P    R +   +   ++  
Sbjct: 37  TGPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVL 96

Query: 491 IATLMAGDQIFPRFGMVPP 547
           I  ++ G   F  FGM  P
Sbjct: 97  IGLIIVGKDPFAFFGMQAP 115



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>SELT_HUMAN (P62341) Selenoprotein T precursor|
          Length = 195

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 311 TGTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGA 490
           TG  ++ + C SC Y+       R++   +P I +  ENY P    R +   +   ++  
Sbjct: 37  TGPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVL 96

Query: 491 IATLMAGDQIFPRFGMVPP 547
           I  ++ G   F  FGM  P
Sbjct: 97  IGLIIVGKDPFAFFGMQAP 115



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>SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor|
          Length = 247

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +2

Query: 320 TVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIAT 499
           T+ + +C SC YK             +P + +   N+ P   K  + + + FV++  +  
Sbjct: 86  TLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVL 145

Query: 500 LMAGDQIFPRFGMVPP 547
           ++ G   F RFG+  P
Sbjct: 146 VLGGINPFERFGLGYP 161



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>SELT2_CAEEL (Q19892) Putative selT-like protein F28H7.4 precursor|
          Length = 232

 Score = 36.6 bits (83), Expect = 0.052
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 335 FCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAIATLMAGD 514
           F  SC YK             +PG+ +   N+ P F K  L ++V   ++G IA ++ G 
Sbjct: 92  FSVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIVITGS 151

Query: 515 QIFPRFGMVPP 547
             F   G   P
Sbjct: 152 NPFEYIGFGYP 162



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>SEPW1_PIG (Q95KL4) Selenoprotein W|
          Length = 86

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 GTTVELKFCASCSYKGNAMTMKRMLDTSFPG 406
           G  V + +C +C YK   + +K+ L+  FPG
Sbjct: 1   GVAVRVVYCGACGYKSKYLQLKKKLEDEFPG 31



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>SEPW1_MACMU (P63303) Selenoprotein W|
          Length = 86

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPG 406
           V + +C +C YK   + +K+ L+  FPG
Sbjct: 4   VRVVYCGACGYKSKYLQLKKKLEDEFPG 31



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>SEPW1_HUMAN (P63302) Selenoprotein W|
          Length = 86

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 VELKFCASCSYKGNAMTMKRMLDTSFPG 406
           V + +C +C YK   + +K+ L+  FPG
Sbjct: 4   VRVVYCGACGYKSKYLQLKKKLEDEFPG 31



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>GID_RHOPA (Q6N5Z1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 478

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 413 VVLENYPPPFPKRALGKMVPFVQVGAIATLMAGDQIFP----RFGMVPP 547
           +V ++  PP P  ALG ++  +  G I T+ AG + F      FG+ PP
Sbjct: 381 LVGQSLAPPPPTTALGALLGHITGGHIETIDAGPRSFQPMNINFGLFPP 429



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>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 APQPPAAPKPHRHPQPTSGAF 247
           AP P  AP PH HP P + AF
Sbjct: 279 APPPGPAPHPHPHPHPHAFAF 299



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>GID_RHOCA (O68141) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 445

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 431 PPPFPKRALGKMVPFVQVGAIATLMAGDQIFPRFGMVPP 547
           PPP P+ A+G +V  +  GA+A       +   FG+ PP
Sbjct: 375 PPPGPETAMGALVNHITGGAVAKTFQPMNV--NFGLFPP 411



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>FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide|
           hydrolase) (Anandamide amidohydrolase)
          Length = 579

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 25/80 (31%), Positives = 33/80 (41%)
 Frame = +2

Query: 314 GTTVELKFCASCSYKGNAMTMKRMLDTSFPGIHVVLENYPPPFPKRALGKMVPFVQVGAI 493
           G  V LK C S  YKG+A T+   L+       V  E+         L   VPFV     
Sbjct: 136 GVPVSLKECFS--YKGHASTLGLSLNEG-----VTSESDCVVVQVLKLQGAVPFVHTNVP 188

Query: 494 ATLMAGDQIFPRFGMVPPPW 553
            ++++ D   P FG    PW
Sbjct: 189 QSMLSYDCSNPLFGQTMNPW 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,599,815
Number of Sequences: 219361
Number of extensions: 1037008
Number of successful extensions: 4140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4100
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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