>PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 38/86 (44%)
 Frame = +2

Query: 251 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 430
           RPW+  VD+  FSRP +L +   RL RN+ Y++ NY                    + L 
Sbjct: 43  RPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101

Query: 431 VLAAWCFLYIFRASDQPVALFGRTFS 508
           V    C++   R  +  + LFGR  S
Sbjct: 102 VFFGACYILYLRTLESKLVLFGREVS 127

>PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = +2

Query: 221 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXX 400
           E   R  +  RPW+  VD+  FSRP +L +   RL RN+ Y++ NY              
Sbjct: 33  ERLERRRATIRPWSSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYV-FVFLGLILYCVV 91

Query: 401 XXXXXXILLGVLAAWCFLYIFRASDQPVALFGRTFS 508
                 + L V    C++   R       LFGR  S
Sbjct: 92  TSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVS 127

>PRAF1_RAT (O35394) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = +2

Query: 251 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 430
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY                    + L 
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101

Query: 431 VLAAWCFLYIFRASDQPVALFGRTFS 508
           V    C++   R     + LFGR  S
Sbjct: 102 VFFGACYILYLRTLQSKLVLFGREVS 127

>PRAF1_MOUSE (Q9Z0S9) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
           (Prenylin)
          Length = 185

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = +2

Query: 251 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 430
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY                    + L 
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101

Query: 431 VLAAWCFLYIFRASDQPVALFGRTFS 508
           V    C++   R     + LFGR  S
Sbjct: 102 VFFGACYILYLRTLQSKLVLFGREVS 127

>VNCN_PAVBO (P07295) Probable noncapsid protein NP1|
          Length = 213

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 543 EATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQ-AARTPRRMRSEKGWA--RSEAASAK 373
           E + SPR    S   R KS   WSE R+  R     +R+P R R E+ W   RS   +  
Sbjct: 2   ERSRSPRETG-STSSRDKSDADWSERRREERTRTWKSRSPIRARGERSWGSWRSREKNQS 60

Query: 372 ATTA 361
           ++TA
Sbjct: 61  SSTA 64

>PRA1_YEAST (P53633) Prenylated Rab acceptor 1|
          Length = 176

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
 Frame = +2

Query: 221 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXX 400
           +S +  L+  R   E  +    S+P +  +  SR+  NL YF  NY              
Sbjct: 27  QSFQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNYGLIIGCLSIYTLLT 86

Query: 401 XXXXXXILLGVLAAWCFLYIFRASDQPVALFGRTFSDRETLLGLI-VASLVAFFFTPVAS 577
                 +++ V+A    +   +  ++ V  FG +F   +   GL+ VA  + F  +P+++
Sbjct: 87  NLLLLFVIVLVVAGIVGINKLK-GEELVTPFG-SFKTNQLYTGLVCVAVPIGFLASPIST 144

Query: 578 LI 583
           L+
Sbjct: 145 LL 146

>PRA1_SCHPO (Q9UUN5) PRA1-like protein|
          Length = 171

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 209 SRISESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 358
           S I  S  + LS  +   E +D    SRP + S+A SR+  N + F  NY
Sbjct: 16  SEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNY 65

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 561  KKKATSEATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQAARTPRRMRSEKGWARSEAA 382
            KK+ +S  + S RS S   K R +++   S ARK   K ++ R+  R RS     R  + 
Sbjct: 1801 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1860

Query: 381  S 379
            S
Sbjct: 1861 S 1861

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 561  KKKATSEATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQAARTPRRMRSEKGWARSEAA 382
            KK+ +S  + S RS S   K R +++   S ARK   K ++ R+  R RS     R  + 
Sbjct: 1816 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1875

Query: 381  S 379
            S
Sbjct: 1876 S 1876

>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 514  AVGEGAAEERDGLVGGAEDVEEAPGGED 431
            A  EG    R G +GGA DVE+   GED
Sbjct: 999  AQAEGRCRLRPGALGGAADVEDTKEGED 1026

>BRO1_CRYNE (Q5KE13) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 957

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 19  PSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 117
           PSR   ++P  AP   P        APPPGH P
Sbjct: 888 PSRPTYASPPFAPQQPPMQSGHSPYAPPPGHAP 920

>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 12) (ADAM-TS
            12) (ADAM-TS12)
          Length = 1593

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 606  PPTSIPEMMSDATGVKKKATSEATMSPRSVSRSEKVRPKSATGWSEA 466
            PPTS P M++  TG +  +TS   +S  S + + K        W ++
Sbjct: 1023 PPTSRPRMLTTPTGPESMSTSTPAISSPSPTTASKEGDLGGKQWQDS 1069


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,963,912
Number of Sequences: 219361
Number of extensions: 574897
Number of successful extensions: 2169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)