ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 66 5e-11
2GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing fac... 32 0.97
3K1219_MOUSE (Q8BQZ4) Protein KIAA1219 29 6.3
4RNF19_MOUSE (P50636) RING finger protein 19 (XY body protein) (X... 28 8.2

>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 34/93 (36%), Positives = 50/93 (53%)
 Frame = +2

Query: 176 LIPGLPEEVAEKCLLHLPFLYHRLFRTVSSNWNRFLTDXXXXXXXXXXXXXXXXVXXXXX 355
           LI GLP ++AE CLL LP+ YH L+R+VSS+WN+ +T+                +     
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITN-------PRFLFSKQSLSISSP 80

Query: 356 XXXXXXXDPVSRRLQCQALDPFSRRWLLLPPVP 454
                  +  + R+Q Q+LD  S RW +LPP+P
Sbjct: 81  YLFVFAFNKSTARIQWQSLDLASGRWFVLPPMP 113



to top

>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
          (Brevin)
          Length = 780

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 14 HSQTTARARSEQRSPQSRTKNAGP 85
          H+ TT+R R+++R+PQSR   A P
Sbjct: 24 HAATTSRGRAQERAPQSRVSEARP 47



to top

>K1219_MOUSE (Q8BQZ4) Protein KIAA1219|
          Length = 1484

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 179 IPGLPEEVAE-KCLLHLPFLYHRLFRTVSSNWNRFL 283
           + G+P+E+++  CL HLP ++ R  R +S   + FL
Sbjct: 315 VSGMPQELSQYPCLKHLPQIFFRAMRGISCLVDAFL 350



to top

>RNF19_MOUSE (P50636) RING finger protein 19 (XY body protein) (XYbp)|
           (Gametogenesis expressed protein GEG-154)
           (UBCM4-interacting protein 117) (UIP117)
          Length = 840

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 450 TGGSSSHRREKGSSAWHWSRRETGSK 373
           TGG+SS   E  SSA  WS+  TG K
Sbjct: 646 TGGASSGLPEGKSSATKWSKEATGGK 671


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,395,930
Number of Sequences: 219361
Number of extensions: 459621
Number of successful extensions: 1487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top