Clone Name | bart30b12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... | 66 | 5e-11 | 2 | GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing fac... | 32 | 0.97 | 3 | K1219_MOUSE (Q8BQZ4) Protein KIAA1219 | 29 | 6.3 | 4 | RNF19_MOUSE (P50636) RING finger protein 19 (XY body protein) (X... | 28 | 8.2 |
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>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)| Length = 372 Score = 65.9 bits (159), Expect = 5e-11 Identities = 34/93 (36%), Positives = 50/93 (53%) Frame = +2 Query: 176 LIPGLPEEVAEKCLLHLPFLYHRLFRTVSSNWNRFLTDXXXXXXXXXXXXXXXXVXXXXX 355 LI GLP ++AE CLL LP+ YH L+R+VSS+WN+ +T+ + Sbjct: 28 LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITN-------PRFLFSKQSLSISSP 80 Query: 356 XXXXXXXDPVSRRLQCQALDPFSRRWLLLPPVP 454 + + R+Q Q+LD S RW +LPP+P Sbjct: 81 YLFVFAFNKSTARIQWQSLDLASGRWFVLPPMP 113
>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) Length = 780 Score = 31.6 bits (70), Expect = 0.97 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +2 Query: 14 HSQTTARARSEQRSPQSRTKNAGP 85 H+ TT+R R+++R+PQSR A P Sbjct: 24 HAATTSRGRAQERAPQSRVSEARP 47
>K1219_MOUSE (Q8BQZ4) Protein KIAA1219| Length = 1484 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +2 Query: 179 IPGLPEEVAE-KCLLHLPFLYHRLFRTVSSNWNRFL 283 + G+P+E+++ CL HLP ++ R R +S + FL Sbjct: 315 VSGMPQELSQYPCLKHLPQIFFRAMRGISCLVDAFL 350
>RNF19_MOUSE (P50636) RING finger protein 19 (XY body protein) (XYbp)| (Gametogenesis expressed protein GEG-154) (UBCM4-interacting protein 117) (UIP117) Length = 840 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2 Query: 450 TGGSSSHRREKGSSAWHWSRRETGSK 373 TGG+SS E SSA WS+ TG K Sbjct: 646 TGGASSGLPEGKSSATKWSKEATGGK 671 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,395,930 Number of Sequences: 219361 Number of extensions: 459621 Number of successful extensions: 1487 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1486 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)