ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30a09 |
|---|---|
| Clone Library Name | barley_pub |
>EXOA_BACSU (P37454) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 252 Score = 61.6 bits (148), Expect = 2e-09 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 1/144 (0%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTT 323 + ++WN N L M+ F ++ D D+IC+QE ++ Sbjct: 2 KLISWNVNGLRAVMRK--MDFLSYLKEEDADIICLQETKI-------------------- 39 Query: 324 SSREEKQIVLRALSSSPFKDYRVWWSLSDSK-YAGTAVFMKKKFEPKKVSFNLDRTSSKH 500 ++ Q+ L+ +DY V+W+ + K Y+GTAVF K+ EP +V + + +H Sbjct: 40 ---QDGQVDLQP------EDYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIG--VEEH 86 Query: 501 DADGRVIIVEFESFLLLNTYAPNN 572 D +GRVI +EFE+ ++ Y PN+ Sbjct: 87 DQEGRVITLEFENVFVMTVYTPNS 110
>ARP_ARATH (P45951) Apurinic endonuclease-redox protein (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) Length = 536 Score = 60.5 bits (145), Expect = 3e-09 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 2/145 (1%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTT 323 + +TWN N L +K + + Q R + D++C+QE ++ K+ E+K Sbjct: 277 KVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQV-------KDVEEIKKTLI 329 Query: 324 SSREEKQIVLRALSSSPFKDYRVWWSLSDSK--YAGTAVFMKKKFEPKKVSFNLDRTSSK 497 + +WS S SK Y+GTA+ + K +S S Sbjct: 330 DGYDHS-----------------FWSCSVSKLGYSGTAIISRIK----PLSVRYGTGLSG 368 Query: 498 HDADGRVIIVEFESFLLLNTYAPNN 572 HD +GR++ EF+SF L+NTY PN+ Sbjct: 369 HDTEGRIVTAEFDSFYLINTYVPNS 393
>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (Class II apurinic/apyrimidinic(AP)-endonuclease) Length = 361 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 1/143 (0%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTT 323 + ++WN + F + V + +PDV+C+QE ++ NPS +K D Sbjct: 106 KIISWNVAGFKSVLSK---GFTECVEKENPDVLCLQETKI----------NPSNIKKDQM 152 Query: 324 SSREEKQIVLRALSSSPFKDYRVWWSLSDSK-YAGTAVFMKKKFEPKKVSFNLDRTSSKH 500 K Y + +D K + GT V KKK P ++F + +KH Sbjct: 153 P-----------------KGYEYHFIEADQKGHHGTGVLTKKK--PNAITFGIG--IAKH 191 Query: 501 DADGRVIIVEFESFLLLNTYAPN 569 D +GRVI +E+ F ++NTY PN Sbjct: 192 DNEGRVITLEYVQFYIVNTYIPN 214
>APEX1_RAT (P43138) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 316 Score = 53.5 bits (127), Expect = 4e-07 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Frame = +3 Query: 144 RFVTWNANSLLLRMKS---DWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKD 314 + +WN + L +K DW V PD++C+QE + K P+EL++ Sbjct: 61 KICSWNVDGLRAWIKKKGLDW------VKEEAPDILCLQETKC------SENKLPAELQE 108 Query: 315 DTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSK-YAGTAVFMKKKFEPKKVSFNLDRTS 491 P ++ W + SD + Y+G + ++ P KVS+ + Sbjct: 109 ------------------LPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGE-- 146 Query: 492 SKHDADGRVIIVEFESFLLLNTYAPN 569 +HD +GRVI+ EFESF+L+ Y PN Sbjct: 147 EEHDQEGRVIVAEFESFILVTAYVPN 172
>APEX1_MOUSE (P28352) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 316 Score = 53.1 bits (126), Expect = 5e-07 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Frame = +3 Query: 144 RFVTWNANSLLLRMKS---DWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKD 314 + +WN + L +K DW V PD++C+QE + K P+EL++ Sbjct: 61 KICSWNVDGLRAWIKKKGLDW------VKEEAPDILCLQETKC------SENKLPAELQE 108 Query: 315 DTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSK-YAGTAVFMKKKFEPKKVSFNLDRTS 491 P ++ W + SD + Y+G + ++ P KVS+ + Sbjct: 109 ------------------LPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGE-- 146 Query: 492 SKHDADGRVIIVEFESFLLLNTYAPN 569 +HD +GRVI+ EFESF+L+ Y PN Sbjct: 147 EEHDQEGRVIVAEFESFVLVTAYVPN 172
>APEX1_HUMAN (P27695) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) (REF-1 protein) Length = 317 Score = 52.8 bits (125), Expect = 7e-07 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 3/145 (2%) Frame = +3 Query: 144 RFVTWNANSLLLRMKS---DWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKD 314 + +WN + L +K DW V PD++C+QE + K P+EL++ Sbjct: 62 KICSWNVDGLRAWIKKKGLDW------VKEEAPDILCLQETKC------SENKLPAELQE 109 Query: 315 DTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKKKFEPKKVSFNLDRTSS 494 L LS +WS K + V + + P KVS+ + Sbjct: 110 ------------LPGLSHQ-------YWSAPSDKEGYSGVGLLSRQCPLKVSYGIG--DE 148 Query: 495 KHDADGRVIIVEFESFLLLNTYAPN 569 +HD +GRVI+ EF+SF+L+ Y PN Sbjct: 149 EHDQEGRVIVAEFDSFVLVTAYVPN 173
>APEX1_BOVIN (P23196) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 317 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 3/145 (2%) Frame = +3 Query: 144 RFVTWNANSLLLRMKS---DWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKD 314 + +WN + L +K DW V PD++C+QE + K P EL++ Sbjct: 62 KICSWNVDGLRAWIKKKGLDW------VKEEAPDILCLQETKC------SENKLPVELQE 109 Query: 315 DTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKKKFEPKKVSFNLDRTSS 494 + S + +WS K + V + + P KVS+ + Sbjct: 110 LSGLSHQ-------------------YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGE--E 148 Query: 495 KHDADGRVIIVEFESFLLLNTYAPN 569 +HD +GRVI+ E+++F+L+ Y PN Sbjct: 149 EHDQEGRVIVAEYDAFVLVTAYVPN 173
>EXOA_STRR6 (P0A2X4) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 275 Score = 49.3 bits (116), Expect = 8e-06 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 10/152 (6%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSA------FCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSE 305 + ++WN +SL + SD + Q + + D+I +QE ++ A KG K E Sbjct: 2 KLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSA---KGPTKKHVE 58 Query: 306 LKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSK----YAGTAVFMKKKFEPKKVSF 473 + ++ F Y W S YAGT KK+ P +SF Sbjct: 59 ILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-ISF 99 Query: 474 NLDRTSSKHDADGRVIIVEFESFLLLNTYAPN 569 S D +GR+I +EF++F + Y PN Sbjct: 100 PEIGAPSTMDLEGRIITLEFDAFFVTQVYTPN 131
>EXOA_STRPN (P0A2X3) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 275 Score = 49.3 bits (116), Expect = 8e-06 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 10/152 (6%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSA------FCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSE 305 + ++WN +SL + SD + Q + + D+I +QE ++ A KG K E Sbjct: 2 KLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSA---KGPTKKHVE 58 Query: 306 LKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSK----YAGTAVFMKKKFEPKKVSF 473 + ++ F Y W S YAGT KK+ P +SF Sbjct: 59 ILEEL------------------FPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-ISF 99 Query: 474 NLDRTSSKHDADGRVIIVEFESFLLLNTYAPN 569 S D +GR+I +EF++F + Y PN Sbjct: 100 PEIGAPSTMDLEGRIITLEFDAFFVTQVYTPN 131
>RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) Length = 679 Score = 45.1 bits (105), Expect = 1e-04 Identities = 34/143 (23%), Positives = 56/143 (39%) Frame = +3 Query: 144 RFVTWNANSLLLRMKSDWSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTT 323 + +WN L +K D Q + +PD+ C+QE + +L ++ T Sbjct: 428 KICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKCAN----------DQLPEEVT 474 Query: 324 SSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKKKFEPKKVSFNLDRTSSKHD 503 Y +W YAG A++ K P V + + + + D Sbjct: 475 R----------------LPGYHPYWLCMPGGYAGVAIY--SKIMPIHVEYGIG--NEEFD 514 Query: 504 ADGRVIIVEFESFLLLNTYAPNN 572 GR+I E+E F L+N Y PN+ Sbjct: 515 DVGRMITAEYEKFYLINVYVPNS 537
>APN2_SCHPO (P87175) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (AP endonuclease 2) (Apurinic-apyrimidinic endonuclease 2) Length = 523 Score = 33.1 bits (74), Expect = 0.58 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 17/160 (10%) Frame = +3 Query: 144 RFVTWNANSLLLRMKS-DWS---AFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELK 311 R ++WN N + W+ ++ + L DVICVQE++M P+ + ++ Sbjct: 2 RILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQ---KDSFPQQYAVVE 58 Query: 312 DDTTSSREEKQIVLRALSSSPF---KDYRVWWSLSDSKYAGTAVFMKKKF------EPKK 464 + K + + S F KD + + G +K+ E +K Sbjct: 59 GFDSYFTFPK--IRKGYSGVGFYVKKDVAIPVKAEEG-ITGILPVRGQKYSYSEAPEHEK 115 Query: 465 VSF---NLDR-TSSKHDADGRVIIVEFESFLLLNTYAPNN 572 + F ++DR T++ D++GR I+++F+ F+L+ Y P N Sbjct: 116 IGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVN 155
>VS06_ROTPY (Q06386) VP6 protein (Major capsid protein) (Major internal| structural protein) Length = 397 Score = 32.3 bits (72), Expect = 0.98 Identities = 21/90 (23%), Positives = 39/90 (43%) Frame = +3 Query: 234 DVICVQEVRMPAAGSKGAPKNPSELKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDS 413 D +C+ E+ + + AP++ + R+ I + ++ DY W+L + Sbjct: 93 DNVCMDEIARESQRNGIAPQSEA--------LRKLSGIKFKRINFDNSSDYIENWNLQNR 144 Query: 414 KYAGTAVFMKKKFEPKKVSFNLDRTSSKHD 503 ++ VF K P SF L+R+ HD Sbjct: 145 RHGTGFVFHKPNILPYSASFTLNRSQPAHD 174
>YB0F_SCHPO (P87156) Hypothetical protein C25H2.15 in chromosome II| Length = 396 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Frame = +3 Query: 195 WSAFCQFVARLDPDVICVQEVRMPAAGSKGAPKNPSELK--DDTTSSREEKQIVLRALSS 368 W R+ ++CV+ VR+P A K+P + ++ SS +EK++ A++S Sbjct: 81 WGCHNPSCRRVPNSIVCVRGVRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITS 140 Query: 369 SPFKDYRVWWSLSDSKYAGTAVFMKKKFEPKKVSFNL 479 + SD+ A + P K S N+ Sbjct: 141 ESSRGLN---PFSDATSANNPFSLSTDVNPSKPSSNV 174
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog| Length = 1259 Score = 30.4 bits (67), Expect = 3.7 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Frame = +3 Query: 309 KDDTTSSREEKQIVLRALSSSPFKDYR-VWWSLSDSKYAGTAVFMKKK--FEPKKVSFNL 479 +D + +E + R K +R ++ + K AG A+ + K F+P K+ Sbjct: 33 QDPSVCCIQETHLTCRDTHRLKIKGWRNIYQANGKQKKAGVAILVSDKTDFKPTKI---- 88 Query: 480 DRTSSKHDADGRVIIV----EFESFLLLNTYAPN 569 K D +G I+V + E +LN YAPN Sbjct: 89 -----KRDKEGHYIMVKGSIQQEELTILNIYAPN 117
>TTRAP_HUMAN (O95551) TRAF and TNF receptor-associated protein (ETS1-associated| protein 2) (ETS1-associated protein II) (EAPII) Length = 362 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +3 Query: 150 VTWNANSLLLRMKSDWS-AFCQFVARLDPDVICVQEVRMP 266 +TWN + L L S+ + C ++A PDVI +QEV P Sbjct: 117 ITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPP 156
>DTNB_HUMAN (O60941) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)| Length = 627 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -3 Query: 559 YVFSNKNDSNSTMMTRPSASCLEDVLSKLNDTFFGSNFFFINTAVPAYFESER 401 YVFS +DSN M+ L++VL F G +F + +V F +R Sbjct: 150 YVFSQMSDSNGLMIFSKFDQFLKEVLKLPTAVFEGPSFGYTEHSVRTCFPQQR 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,099,232 Number of Sequences: 219361 Number of extensions: 1110949 Number of successful extensions: 3033 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2976 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3031 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
