No.
Definition
Score (bits)
E Value
1 dbj|AK070295.1| Oryza sativa (japonica cultivar-group) cDNA clon...
496
e-137
2 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
214
2e-52
3 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
214
2e-52
4 emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007...
214
2e-52
5 gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par...
182
8e-43
6 gb|CP000114.1| Streptococcus agalactiae A909, complete genome
44
0.50
7 gb|AE014237.1| Streptococcus agalactiae 2603V/R section 47 of 10...
44
0.50
8 emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet...
44
0.50
9 emb|AL355531.16| Human DNA sequence from clone RP11-300B2 on chr...
42
2.0
10 gb|AC122178.2| Homo sapiens chromosome 3 clone RP11-340I14, comp...
42
2.0
11 gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.33...
42
2.0
12 emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
42
2.0
13 gb|AY761562.1| Sorghum bicolor clone 51836 unknown sequence
42
2.0
14 gb|AY761561.1| Sorghum bicolor clone 50744 unknown sequence
42
2.0
15 gb|AY761560.1| Sorghum bicolor clone 213900 unknown sequence
42
2.0
16 gb|AY761559.1| Sorghum arundinaceum clone LWA88 unknown sequence
42
2.0
17 gb|AY761558.1| Sorghum x drummondii clone LWA71b unknown sequence
42
2.0
18 gb|AY761557.1| Sorghum x drummondii clone LWA71a unknown sequence
42
2.0
19 gb|AY761556.1| Sorghum arundinaceum clone LWA55 unknown sequence
42
2.0
20 gb|AY761555.1| Sorghum arundinaceum clone LWA42 unknown sequence
42
2.0
21 gb|AY761554.1| Sorghum arundinaceum clone LWA28 unknown sequence
42
2.0
22 gb|AY761553.1| Sorghum x drummondii clone LWA12 unknown sequence
42
2.0
23 gb|AY761552.1| Sorghum arundinaceum clone LWA13 unknown sequence
42
2.0
24 gb|AY761551.1| Sorghum arundinaceum clone LWA22 unknown sequence
42
2.0
25 gb|AY761550.1| Sorghum bicolor clone 257595 unknown sequence
42
2.0
26 gb|AY761549.1| Sorghum bicolor clone 221540 unknown sequence
42
2.0
27 gb|AY761548.1| Sorghum bicolor clone 221655 unknown sequence
42
2.0
28 gb|AY761547.1| Sorghum bicolor clone 221607 unknown sequence
42
2.0
29 gb|AY761546.1| Sorghum bicolor clone 22913 unknown sequence
42
2.0
30 gb|AY761545.1| Sorghum bicolor clone 152702 unknown sequence
42
2.0
31 gb|AY761544.1| Sorghum bicolor clone 287624 unknown sequence
42
2.0
32 gb|AY761543.1| Sorghum bicolor unknown sequence
42
2.0
33 gb|AY761542.1| Sorghum bicolor clone 267523 unknown sequence
42
2.0
34 gb|AY761541.1| Sorghum bicolor clone 267525b unknown sequence
42
2.0
35 gb|AY761540.1| Sorghum bicolor clone 267525a unknown sequence
42
2.0
36 gb|AY761539.1| Sorghum bicolor clone 510985 unknown sequence
42
2.0
37 gb|AY761538.1| Sorghum bicolor clone 77034 unknown sequence
42
2.0
38 gb|AY761537.1| Sorghum bicolor clone 83707 unknown sequence
42
2.0
39 gb|AY761536.1| Sorghum bicolor clone 87088 unknown sequence
42
2.0
40 gb|AY761535.1| Sorghum bicolor clone 55751 unknown sequence
42
2.0
41 gb|AY761534.1| Sorghum bicolor clone 51365 unknown sequence
42
2.0
42 gb|AY761533.1| Sorghum bicolor clone 51032 unknown sequence
42
2.0
43 gb|AY761532.1| Sorghum bicolor clone 51397 unknown sequence
42
2.0
44 gb|AY761531.1| Sorghum bicolor clone 50875 unknown sequence
42
2.0
45 gb|AY761530.1| Sorghum bicolor clone RTx430 unknown sequence
42
2.0
46 gb|AY761529.1| Sorghum bicolor clone BTx623 unknown sequence
42
2.0
47 gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
40
7.8
48 gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
40
7.8
49 gb|AY557483.1| Bathyteuthis abyssicola 18S ribosomal RNA gene, c...
40
7.8
50 gb|BC004203.2| Homo sapiens RNA, U transporter 1, mRNA (cDNA clo...
40
7.8
51 gb|AY163769.1| Homo sapiens excision repair cross-complementing ...
40
7.8
52 gb|AC122314.4| Mus musculus BAC clone RP23-301K1 from 12, comple...
40
7.8
53 emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in...
40
7.8
54 gb|AC165890.2| Mus musculus 6 BAC RP24-133O13 (Roswell Park Canc...
40
7.8
55 emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ...
40
7.8
56 dbj|AK126697.1| Homo sapiens cDNA FLJ44743 fis, clone BRACE30282...
40
7.8
57 emb|CR623907.1| full-length cDNA clone CS0DI016YJ10 of Placenta ...
40
7.8
58 gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c...
40
7.8
59 ref|NM_005701.2| Homo sapiens RNA, U transporter 1 (RNUT1), mRNA
40
7.8
60 gb|AF449714.1|AF449714 Cercopithecine herpesvirus 2 unique short...
40
7.8
61 gb|AC093211.3| Homo sapiens chromosome 5 clone CTD-2020P3, compl...
40
7.8
62 gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...
40
7.8
63 gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h...
40
7.8
64 gb|AC026749.5|AC026749 Homo sapiens chromosome 5 clone RP11-415K...
40
7.8
65 gb|AC105020.18| Homo sapiens chromosome 15, clone CTD-2026K11, c...
40
7.8
66 gb|AC110926.5| Homo sapiens BAC clone RP11-313N8 from 2, complet...
40
7.8
67 gb|AC010491.4| Homo sapiens chromosome 5 clone CTD-2335I23, comp...
40
7.8
68 gb|AC158643.3| Mus musculus BAC RP23-477A19 (Roswell Park Cance...
40
7.8
69 gb|AE005116.1| Halobacterium sp. NRC-1 section 147 of 170 of the...
40
7.8
70 ref|XM_564413.1| Anopheles gambiae str. PEST ENSANGP00000025865 ...
40
7.8
71 ref|NM_208938.1| Eremothecium gossypii ACR183Cp (ACR183C), mRNA
40
7.8
72 gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, comp...
40
7.8
73 gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, comple...
40
7.8
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 214 bits (108), Expect = 2e-52
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 346 tagtgctgcgtgctttgtcgagttcacctttcaaagactaccgtgtctggtggtcccttt 405
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||
Sbjct: 10512959 tagtgctgcgtgctttgtcgagtccaccttttaaagactatcgtgtctggtggtctcttt 10512900
Query: 406 cagattcaaaatatgcaggcacagctgtgtttatgaagaagaagtttgaaccaaagaaag 465
|||| || |||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 10512899 cagactccaaatatgcaggcacagctatgattataaagaagaagtttgaaccaaagaaag 10512840
Query: 466 tgtcattcaacttggatagaacat 489
||||||||||||||||||||||||
Sbjct: 10512839 tgtcattcaacttggatagaacat 10512816
Score = 145 bits (73), Expect = 2e-31
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 144 aggttcgtcacgtggaacgccaacagccttctgctccggatgaagagcgactggtccgcg 203
|||||||| |||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct: 10514556 aggttcgtgacgtggaacgccaacagcctgctcctccggatgaagagcgactggccggcc 10514497
Query: 204 ttctgtcagttcgtcgcccgcctcgaccccgacgtcatctgcgtccagg 252
||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 10514496 ttctgccagttcgtctcccgcgtcgaccccgacgtcatctgcgtccagg 10514448
Score = 109 bits (55), Expect = 1e-20
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 250 aggaagtgcggatgccagcagcaggttccaaaggggcaccaaaaaatcctagtgagctaa 309
|||||||||||||||||||||| ||||||||||||||||||||||||||| || | || |
Sbjct: 10513418 aggaagtgcggatgccagcagctggttccaaaggggcaccaaaaaatcctggtcaactga 10513359
Query: 310 aagatgacacaacctcgtcacgcgaagaaaa 340
|||||||||||| ||| ||||| || |||||
Sbjct: 10513358 aagatgacacaagctcatcacgagatgaaaa 10513328
Score = 65.9 bits (33), Expect = 1e-07
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1 agcgcttcttccagcccgtagtcaaggacggctcccccgccaagaagaggcccgccg 57
||||||||||||||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 10514732 agcgcttcttccagcccgtgcccaaggatggctccccggcgaagaagaggcccgccg 10514676
Score = 40.1 bits (20), Expect = 7.8
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 490 cttctaagcatgatgcagacggtcgtgtcatcattgtggaatttgaatcattcttgttac 549
|||| |||||||| |||| || ||||| || |||| ||||| ||||| ||| | || |
Sbjct: 10511913 cttccaagcatgaaccagatgggcgtgttattattgcagaattcgaatcgttcctcttgc 10511854
Query: 550 taaacacatatgctccaaacaatg 573
| ||||| ||||||||||||||||
Sbjct: 10511853 tgaacacttatgctccaaacaatg 10511830
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 214 bits (108), Expect = 2e-52
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 346 tagtgctgcgtgctttgtcgagttcacctttcaaagactaccgtgtctggtggtcccttt 405
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||
Sbjct: 10512841 tagtgctgcgtgctttgtcgagtccaccttttaaagactatcgtgtctggtggtctcttt 10512782
Query: 406 cagattcaaaatatgcaggcacagctgtgtttatgaagaagaagtttgaaccaaagaaag 465
|||| || |||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 10512781 cagactccaaatatgcaggcacagctatgattataaagaagaagtttgaaccaaagaaag 10512722
Query: 466 tgtcattcaacttggatagaacat 489
||||||||||||||||||||||||
Sbjct: 10512721 tgtcattcaacttggatagaacat 10512698
Score = 145 bits (73), Expect = 2e-31
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 144 aggttcgtcacgtggaacgccaacagccttctgctccggatgaagagcgactggtccgcg 203
|||||||| |||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct: 10514438 aggttcgtgacgtggaacgccaacagcctgctcctccggatgaagagcgactggccggcc 10514379
Query: 204 ttctgtcagttcgtcgcccgcctcgaccccgacgtcatctgcgtccagg 252
||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 10514378 ttctgccagttcgtctcccgcgtcgaccccgacgtcatctgcgtccagg 10514330
Score = 109 bits (55), Expect = 1e-20
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 250 aggaagtgcggatgccagcagcaggttccaaaggggcaccaaaaaatcctagtgagctaa 309
|||||||||||||||||||||| ||||||||||||||||||||||||||| || | || |
Sbjct: 10513300 aggaagtgcggatgccagcagctggttccaaaggggcaccaaaaaatcctggtcaactga 10513241
Query: 310 aagatgacacaacctcgtcacgcgaagaaaa 340
|||||||||||| ||| ||||| || |||||
Sbjct: 10513240 aagatgacacaagctcatcacgagatgaaaa 10513210
Score = 65.9 bits (33), Expect = 1e-07
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1 agcgcttcttccagcccgtagtcaaggacggctcccccgccaagaagaggcccgccg 57
||||||||||||||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 10514614 agcgcttcttccagcccgtgcccaaggatggctccccggcgaagaagaggcccgccg 10514558
Score = 40.1 bits (20), Expect = 7.8
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 490 cttctaagcatgatgcagacggtcgtgtcatcattgtggaatttgaatcattcttgttac 549
|||| |||||||| |||| || ||||| || |||| ||||| ||||| ||| | || |
Sbjct: 10511795 cttccaagcatgaaccagatgggcgtgttattattgcagaattcgaatcgttcctcttgc 10511736
Query: 550 taaacacatatgctccaaacaatg 573
| ||||| ||||||||||||||||
Sbjct: 10511735 tgaacacttatgctccaaacaatg 10511712
>emb|AL772421.5 |CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 130672
Score = 214 bits (108), Expect = 2e-52
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 346 tagtgctgcgtgctttgtcgagttcacctttcaaagactaccgtgtctggtggtcccttt 405
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||
Sbjct: 38765 tagtgctgcgtgctttgtcgagtccaccttttaaagactatcgtgtctggtggtctcttt 38706
Query: 406 cagattcaaaatatgcaggcacagctgtgtttatgaagaagaagtttgaaccaaagaaag 465
|||| || |||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 38705 cagactccaaatatgcaggcacagctatgattataaagaagaagtttgaaccaaagaaag 38646
Query: 466 tgtcattcaacttggatagaacat 489
||||||||||||||||||||||||
Sbjct: 38645 tgtcattcaacttggatagaacat 38622
Score = 145 bits (73), Expect = 2e-31
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 144 aggttcgtcacgtggaacgccaacagccttctgctccggatgaagagcgactggtccgcg 203
|||||||| |||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct: 40362 aggttcgtgacgtggaacgccaacagcctgctcctccggatgaagagcgactggccggcc 40303
Query: 204 ttctgtcagttcgtcgcccgcctcgaccccgacgtcatctgcgtccagg 252
||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 40302 ttctgccagttcgtctcccgcgtcgaccccgacgtcatctgcgtccagg 40254
Score = 109 bits (55), Expect = 1e-20
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 250 aggaagtgcggatgccagcagcaggttccaaaggggcaccaaaaaatcctagtgagctaa 309
|||||||||||||||||||||| ||||||||||||||||||||||||||| || | || |
Sbjct: 39224 aggaagtgcggatgccagcagctggttccaaaggggcaccaaaaaatcctggtcaactga 39165
Query: 310 aagatgacacaacctcgtcacgcgaagaaaa 340
|||||||||||| ||| ||||| || |||||
Sbjct: 39164 aagatgacacaagctcatcacgagatgaaaa 39134
Score = 65.9 bits (33), Expect = 1e-07
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1 agcgcttcttccagcccgtagtcaaggacggctcccccgccaagaagaggcccgccg 57
||||||||||||||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 40538 agcgcttcttccagcccgtgcccaaggatggctccccggcgaagaagaggcccgccg 40482
Score = 40.1 bits (20), Expect = 7.8
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 490 cttctaagcatgatgcagacggtcgtgtcatcattgtggaatttgaatcattcttgttac 549
|||| |||||||| |||| || ||||| || |||| ||||| ||||| ||| | || |
Sbjct: 37719 cttccaagcatgaaccagatgggcgtgttattattgcagaattcgaatcgttcctcttgc 37660
Query: 550 taaacacatatgctccaaacaatg 573
| ||||| ||||||||||||||||
Sbjct: 37659 tgaacacttatgctccaaacaatg 37636
>gb|AF466200.2 | Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 182 bits (92), Expect = 8e-43
Identities = 131/144 (90%)
Strand = Plus / Minus
Query: 346 tagtgctgcgtgctttgtcgagttcacctttcaaagactaccgtgtctggtggtcccttt 405
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct: 104159 tagttctgcgtgctttgtcaacttcacctttcaaagactaccgtgtctggtggtctcttt 104100
Query: 406 cagattcaaaatatgcaggcacagctgtgtttatgaagaagaagtttgaaccaaagaaag 465
|||||||||||||||| || |||||| ||||||| ||||| |||||||| || ||||| |
Sbjct: 104099 cagattcaaaatatgcggggacagctatgtttataaagaaaaagtttgagcctaagaagg 104040
Query: 466 tgtcattcaacttggatagaacat 489
|||| |||||||||||||||||||
Sbjct: 104039 tgtctttcaacttggatagaacat 104016
Score = 149 bits (75), Expect = 1e-32
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 126 cccggcgaggagccacgcaggttcgtcacgtggaacgccaacagccttctgctccggatg 185
|||| ||||||||| |||| |||| | |||||||||||||||||||| || |||||||||
Sbjct: 106060 cccgccgaggagccgcgcaagttcctgacgtggaacgccaacagcctgctcctccggatg 106001
Query: 186 aagagcgactggtccgcgttctgtcagttcgtcgcccgcctcgaccccgacgtcatctgc 245
|||||||||||| |||| |||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 106000 aagagcgactggcccgctttctcgcagctcgtcgcccgtctcgaccccgacgtcatctgc 105941
Query: 246 gtccagg 252
|||||||
Sbjct: 105940 gtccagg 105934
Score = 85.7 bits (43), Expect = 1e-13
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 250 aggaagtgcggatgccagcagcaggttccaaaggggcaccaaaaaatcctagtgagctaa 309
|||||||||||||||| || || |||||||||||||| || ||||| |||||||| || |
Sbjct: 105016 aggaagtgcggatgccggcggctggttccaaaggggctcctaaaaaccctagtgaactga 104957
Query: 310 aagatgacacaacctcgtcacgcgaagaaaa 340
|||| ||||||| ||||||||| || |||||
Sbjct: 104956 aagacgacacaagctcgtcacgggatgaaaa 104926
Score = 71.9 bits (36), Expect = 2e-09
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 522 attgtggaatttgaatcattcttgttactaaacacatatgctccaaacaatg 573
|||| |||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 103387 attgcggaatttgaatcattcctcttactaaacacttatgctccaaacaatg 103336
Score = 54.0 bits (27), Expect = 5e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1 agcgcttcttccagcccgtagtcaaggacggctcccccgccaagaag 47
|||||||||||||||| || | ||||||||||||||| ||||||||
Sbjct: 106185 agcgcttcttccagccagtggccaaggacggctccccatccaagaag 106139
>gb|AC140376.3 | Mus musculus BAC clone RP24-78P21 from 12, complete sequence
Length = 246636
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 atgcaggcacagctgtgttt 437
||||||||||||||||||||
Sbjct: 26526 atgcaggcacagctgtgttt 26507
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,770,324
Number of Sequences: 3902068
Number of extensions: 4770324
Number of successful extensions: 90448
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90097
Number of HSP's gapped (non-prelim): 351
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)