ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart30a06 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 87.0 bits (214), Expect = 3e-17 Identities = 44/93 (47%), Positives = 60/93 (64%) Frame = +3 Query: 186 SSHAQKYNAVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIVDF 365 +S + A+FNFGDS +DTG GK A PPYGET+F T R SDGR+I+DF Sbjct: 26 ASETCDFPAIFNFGDSNSDTG-----GKAAAFYPLNPPYGETFFHRSTGRYSDGRLIIDF 80 Query: 366 LSTKFGVPFLAPSKSSNGTDFKQGANMAITGAT 464 ++ F +P+L+P SS G++FK GA+ A G+T Sbjct: 81 IAESFNLPYLSPYLSSLGSNFKHGADFATAGST 113
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 80.5 bits (197), Expect = 3e-15 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 2/125 (1%) Frame = +3 Query: 186 SSHAQK--YNAVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIV 359 S+HA + + A+FNFGDS +DTG L A PP+G ++FGSP R DGR+++ Sbjct: 20 STHAHQCHFPAIFNFGDSNSDTGGLSA-----AFGQAGPPHGSSFFGSPAGRYCDGRLVI 74 Query: 360 DFLSTKFGVPFLAPSKSSNGTDFKQGANMAITGATAMDAPFFRGLGLSDKIWNNGPISLQ 539 DF++ G+P+L+ S G++F GAN A G+ R L + + P SL Sbjct: 75 DFIAESLGLPYLSAFLDSVGSNFSHGANFATAGSP------IRALNSTLRQSGFSPFSLD 128 Query: 540 IQWFQ 554 +Q+ Q Sbjct: 129 VQFVQ 133
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 210 AVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETY-FGSPTCRCSDGRVIVDFLSTKFGV 386 AVF FGDSI DTGN + T + PYG + G T R S+GRV D++S GV Sbjct: 125 AVFFFGDSIFDTGN--NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182 Query: 387 PFLAPS 404 + P+ Sbjct: 183 KEIVPA 188
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +3 Query: 210 AVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETY-FGSPTCRCSDGRVIVDFLSTKFGV 386 AVF FGDS+ DTGN + T I PYG + F T R S+G V D+L+ GV Sbjct: 204 AVFFFGDSVFDTGN--NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261 Query: 387 PFLAPS---KSSNGTDFKQGANMAITGA 461 + P+ D G + A GA Sbjct: 262 KEIVPAYLDPKIQPNDLLTGVSFASGGA 289
>CATE_CAVPO (P25796) Cathepsin E precursor (EC 3.4.23.34)| Length = 391 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Frame = +3 Query: 231 SITDTGNLCTSGKPTAITFTQPPYGETYFGSP-TCRCSDGRVIVDFLSTKFGVPFLAPSK 407 +I DTG +G P I Q G TY + +C++ +++D GVP+ Sbjct: 273 AIVDTGTSLITGPPGKIKQLQEALGATYVDEGYSVQCANLNMMLDVTFIINGVPYTLNPT 332 Query: 408 SSNGTDFKQGANMAITGATAMD 473 + DF G + TG ++ Sbjct: 333 AYTLLDFVDGMQVCSTGFEGLE 354
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 31.2 bits (69), Expect = 2.2 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Frame = +3 Query: 210 AVFNFGDSITD----TGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIVDFLSTK 377 AVF+FG + + T +SG +++ + P T+ GS S Sbjct: 1041 AVFSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGSAAPAGSGS---------- 1090 Query: 378 FGVPFLAPSKSSNGTDFKQGANMAITGATAMDAPFFRGLG 497 FG+ P S+ F GA + G+TA PF GLG Sbjct: 1091 FGINVATPGSSATTGAFSFGAGQS--GSTATSTPFTGGLG 1128
>GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Spore germination protein 270-6) (Cellulase) Length = 705 Score = 31.2 bits (69), Expect = 2.2 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 13/108 (12%) Frame = +3 Query: 231 SITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSD--GRVIVDFLSTKFGVPFLAPS 404 S+TDT N+ SG+ +I+FT YG + G C +D + D G L + Sbjct: 578 SLTDTTNV-ESGETNSISFTPKAYGAVFLGCFECIDTDTYNNIEFDINGGSSGAQLLRIT 636 Query: 405 KSSNG--------TDFKQGANMAITGATAMDAPF---FRGLGLSDKIW 515 N TD G + T + A F F+ G D IW Sbjct: 637 VVKNSKSVGSKLITDLNGGTPIEANSWTKIKASFIDDFKVSGKVDGIW 684
>GATA_MYCLE (O33105) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 497 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -1 Query: 518 VPDLVGQAEAAEEGRVHGRRPRDGHVGALLEVRAVG 411 VPD+VG A+A E G +HG R VG + ++R G Sbjct: 251 VPDIVGAAKAGESGDLHGVR-----VGVVRQLRGEG 281
>PCDG4_HUMAN (Q9Y5G9) Protocadherin gamma A4 precursor (PCDH-gamma-A4)| Length = 931 Score = 30.4 bits (67), Expect = 3.7 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Frame = +3 Query: 186 SSHAQKYNAVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIV-D 362 +SH + V F + + +L + + + F+QP Y +T +C S+ +I D Sbjct: 737 ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQD 796 Query: 363 FLSTKFGVPFLAPSKSSNGTDFKQGANMAITGA 461 L TK G P L + + F Q +G+ Sbjct: 797 LLETK-GDPNLQQAPPNTDWRFSQAQRPGTSGS 828
>DBP7_GIBZE (Q4HZ68) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-)| Length = 744 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Frame = +3 Query: 201 KYNAVFNFGDSITDTGNLCTSGKP-TAITFTQPPYGETYF------GSPTCRCSDGRVIV 359 +Y+ F+F D I G +GKP A+ F P E Y +PT + D ++ Sbjct: 541 EYDPAFSFADHIHRVGRTARAGKPGDALLFLLPGTEEGYIELMKGSTTPTSQSYDS-ILQ 599 Query: 360 DFLSTKFGVPFLAPSKSSNGTDFKQGA 440 + TK P +K +G F A Sbjct: 600 KGMMTKLEFPVETTAKPEDGHSFHDKA 626
>PCDG4_PANTR (Q5DRB6) Protocadherin gamma A4 precursor (PCDH-gamma-A4)| Length = 931 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Frame = +3 Query: 186 SSHAQKYNAVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIV-D 362 +SH + V F + + +L + + + F+QP Y +T +C S+ +I D Sbjct: 737 ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISLESCEKSEPLLITQD 796 Query: 363 FLSTKFGVPFLAPSKSSNGTDFKQGANMAITGA 461 L TK G P L + + F Q +G+ Sbjct: 797 LLETK-GDPNLQQAPPNTDWRFSQAQRPGTSGS 828
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 30.0 bits (66), Expect = 4.8 Identities = 27/94 (28%), Positives = 43/94 (45%) Frame = +3 Query: 189 SHAQKYNAVFNFGDSITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIVDFL 368 S+A YN ++ FGDS++D GN +G+ T ++ ++ DF+ Sbjct: 20 SNAHAYNNLYVFGDSLSDGGN---NGRYTV---------------DGINGTESKLYNDFI 61 Query: 369 STKFGVPFLAPSKSSNGTDFKQGANMAITGATAM 470 + + G+ L SK K G N A GATA+ Sbjct: 62 AQQLGIE-LVNSK-------KGGTNYAAGGATAV 87
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +3 Query: 234 ITDTGNLCTSGKPTAITFTQPPYGETYFGSPTCRCSDGRVIVDFLSTKFGVPFLAPSK 407 + DT + G P I F PP G P D +D L +K V F APS+ Sbjct: 426 VDDTAVIERGGAPHRIYFAGPPRNLVIDGIPHLLQFDTPTQIDILGSKHMVKFGAPSR 483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,542,320 Number of Sequences: 219361 Number of extensions: 897647 Number of successful extensions: 3036 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2965 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3034 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
