ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart29h07 |
|---|---|
| Clone Library Name | barley_pub |
>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor| Length = 995 Score = 37.4 bits (85), Expect = 0.025 Identities = 25/100 (25%), Positives = 45/100 (45%) Frame = +1 Query: 145 TKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVS 324 + V++ +ST+ ++ +S D+S+ + S + ++S +++ S+ S VS Sbjct: 177 SSVSQSASSTSDVSSSVSQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVS 236 Query: 325 FXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANS 444 SGS VS + S SSFP SS + S Sbjct: 237 QSASSTSGVSSSGSQSVSSASGSSSSFPQSTSSASTASGS 276
>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1| precursor Length = 1802 Score = 35.0 bits (79), Expect = 0.12 Identities = 26/98 (26%), Positives = 44/98 (44%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + +V ++ +ST S+P +P + Sbjct: 617 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSVPVAVSSTYTSSPSAPAAI--SSTYTS 674 Query: 352 XPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPS 465 PS V VS S S PA +SST + S + + S Sbjct: 675 SPSVPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSS 712 Score = 35.0 bits (79), Expect = 0.12 Identities = 26/98 (26%), Positives = 44/98 (44%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + + ++ +ST S+P +PV+ Sbjct: 533 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPVAI--SSTYTS 590 Query: 352 XPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPS 465 PS V VS S S PA +SST + S + + S Sbjct: 591 SPSVPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSS 628 Score = 33.5 bits (75), Expect = 0.36 Identities = 24/98 (24%), Positives = 42/98 (42%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + + ++ +ST S+P +P + Sbjct: 505 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAI--SSTYTS 562 Query: 352 XPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPS 465 PS V VS S S P +SST + S + + S Sbjct: 563 SPSAPVAVSSTYTSSPSAPVAISSTYTSSPSVPVAVSS 600
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 34.7 bits (78), Expect = 0.16 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 4/117 (3%) Frame = +1 Query: 142 LTKVTKGGASTALYTAPLSAGRPLVFDLSAPSIT----TPCSGQTTTVTLSANSTDGSNP 309 L T A+++ ++ +S+ PL S + T T S Q T +L +ST S P Sbjct: 232 LNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTP 291 Query: 310 LSPVSFXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPSDGVGA 480 LS + P SV + + S+ + VSS + P V + Sbjct: 292 LSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNS 348 Score = 29.6 bits (65), Expect = 5.3 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Frame = +1 Query: 145 TKVTKGGASTALYTAPLSA-----GRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNP 309 T +T ++TA +A ++ + S PS +TP S +T SA+ST P Sbjct: 253 TPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPS-STPLSSANSTTATSASST----P 307 Query: 310 LSPVSFXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPSDGVGA 480 L+ V+ P SV + + S+ +SS + A P V + Sbjct: 308 LTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNS 364
>FMP1_PSEAE (P17838) Fimbrial protein precursor (Pilin) (Strain P1)| Length = 157 Score = 32.3 bits (72), Expect = 0.81 Identities = 21/54 (38%), Positives = 28/54 (51%) Frame = +1 Query: 142 LTKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGS 303 + KVT GG TA S G +V + A + TP G+T T+TL N+ GS Sbjct: 85 VAKVTTGG------TAAASGGCTIVATMKASDVATPLRGKTLTLTL-GNADKGS 131
>PQE1_CAEEL (Q10124) Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1)| Length = 1647 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +3 Query: 42 QHNTTQAQNVAVQASP-GAPPARRLHGGDRRQASAHQGNQGR 164 Q +T QA N+ A+ G PP + + G R Q +AHQ G+ Sbjct: 115 QMSTQQAANLRKNAAAAGTPPKQAMQGASREQGNAHQPTAGQ 156
>COAT_SMSV4 (P36285) Capsid protein precursor (Coat protein)| Length = 703 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +1 Query: 310 LSPVSFXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPSDGVGAA 483 L P + G V L++ GSS+ + ST V+NSF SDG G+A Sbjct: 102 LPPFTITGTHHYYATKPGEVVSGILSKLGSSWDPSLRSTADVSNSFTFRAESDGPGSA 159
>MDR3_CAEEL (P34713) Multidrug resistance protein 3 (EC 3.6.3.44) (P-glycoprotein| C) Length = 1268 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/77 (27%), Positives = 34/77 (44%) Frame = -3 Query: 233 GAERSKTSGRPALRGAV*SAVEAPPLVTLVSRGLPTVATVEAASRRSTRTGLDGNILGLC 54 GA + SG R A+ A+ P + L+ + ++ S + + LD LG Sbjct: 1162 GASGGRLSGGQKQRVAIARAIVRDPKILLLDEA---TSALDTESEKIVQEALDKARLGRT 1218 Query: 53 CVVLCWKLGIEINADAV 3 CVV+ +L NAD + Sbjct: 1219 CVVIAHRLSTIQNADKI 1235
>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2| Length = 906 Score = 30.8 bits (68), Expect = 2.4 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 2/113 (1%) Frame = -3 Query: 524 SAGGARKNGPPPKMAAPTPSLGRQSAN--ELATFCVLDTWAGNEEPERASPETPTEPEGX 351 +A A P P AAPTPS +A + + G P + P TP P+ Sbjct: 179 AAAAASAPAPAPVAAAPTPSAAAPAARAPSSPSSAPRPSRPGGASP-ASRPSTPARPDDR 237 Query: 350 XXXXXXXANETGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTSGRPALR 192 G ++ VE ++ LH D A RS G+P R Sbjct: 238 NNAAKHKTR--GSHVMVAGVEDDDATKRFAGQLHLSAADRARRSNVRGKPTGR 288
>DOS_HUMAN (Q8N350) Protein Dos| Length = 725 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 497 PPPKMAAPTPSLGRQSANELATFCVLDT----WAGNEEPERASPETPTEPE 357 P P +A+P P+LGR A E A D+ AG+ PE+ P P EP+ Sbjct: 392 PRPFLASPPPALGRLEAAEAAGGASPDSPPERGAGSAGPEQQQP--PLEPD 440
>DIS1_SCHPO (Q09933) Phosphoprotein p93| Length = 882 Score = 30.4 bits (67), Expect = 3.1 Identities = 33/106 (31%), Positives = 43/106 (40%) Frame = +1 Query: 127 VGKPLLTKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSN 306 V PL T K A T +PL + P L+ S++T S T T S S Sbjct: 549 VASPLKTSPVKL-AVTPQAPSPLPSSNPSQASLTEESLSTR-SSPTKPSTTSLRSQ---- 602 Query: 307 PLSPVSFXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANS 444 S V+ S S GVS A S SFP+ S ++K+ S Sbjct: 603 --SLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETS 646
>LEU3_SYNEL (P59029) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 361 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 260 TGSIGMLPSASLGESGPALFEPVHGSAPDIAGQDKAN 296
>PME17_MOUSE (Q60696) Melanocyte protein Pmel 17 precursor (Silver locus| protein) Length = 626 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/69 (23%), Positives = 26/69 (37%) Frame = -3 Query: 476 PTPSLGRQSANELATFCVLDTWAGNEEPERASPETPTEPEGXXXXXXXXANETGDSGLLP 297 PT + ++ ++ T V+DT + TPT P G S LLP Sbjct: 354 PTTEVTATTSEQMLTSAVIDTTLAEVSTTEGTGTTPTRPSGTTVAQATTTEGPDASPLLP 413 Query: 296 SVELAESVT 270 + S++ Sbjct: 414 TQSSTGSIS 422
>LEU3_METCA (Q606F4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 360 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAER 222 TG G+LPS LAES + P+HG D A R Sbjct: 258 TGSIGMLPSASLAESGKGMYEPIHGSAPDIAGR 290
>CFTR_PAPAN (Q9TSP5) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACNE (Q9TUQ2) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACMU (Q00553) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACFU (Q7JII7) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACFA (Q7JII8) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel| gene 3 protein) Length = 836 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = +3 Query: 15 IDFDSKLPTQHNTTQAQNVAVQASPGAPPARRLHGGDRRQA---SAHQGNQGRRLHGALH 185 +DF S+ +Q + +A V Q PG P+ RLH G R ++ ++G L G + Sbjct: 538 LDFKSEGSSQ-SLEEAHLVKAQFIPGQQPSVRLHRGHRNMGVVKNSSLKHRGPALQGLEN 596 Query: 186 GAPQRRPPT 212 G P R T Sbjct: 597 GLPTVREKT 605
>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1485 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T LSAN DG N L +SF P VG+ G SG S Sbjct: 1208 PSGGQMTVKNLSANYIDGGNTVLENISF------SLSPGQRVGLLGRTGSGKS 1254
>CRF1_ASPFU (Q8J0P4) Probable glycosidase crf1 precursor (EC 3.2.-.-) (Crh-like| protein) (Allergen Asp f 9) Length = 395 Score = 29.3 bits (64), Expect = 6.9 Identities = 27/117 (23%), Positives = 46/117 (39%) Frame = +1 Query: 145 TKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVS 324 + VT STA + S+ P L+ + TP T++ +NS+ + P + Sbjct: 275 SSVTSSTTSTASSASSTSSKTPSTSTLATSTKATPTPSGTSS---GSNSSSSAEPTTTGG 331 Query: 325 FXXXXXXXXXPSGSVGVSGLARSGSSFPAQVSSTQKVANSFALCLPSDGVGAAIFGG 495 SGS G + +GSS A S+T +++ A + A+ G Sbjct: 332 TGSSNTGSGSGSGS-GSGSSSSTGSSTSAGASATPELSQGAAGSIKGSVTACALVFG 387
>LEU33_ARATH (Q9FMT1) 3-isopropylmalate dehydrogenase 3, chloroplast precursor| (EC 1.1.1.85) (Beta-IPM dehydrogenase 3) (IMDH 3) (3-IPM-DH 3) Length = 409 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 302 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKAN 338
>MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in metastasis| protein) Length = 759 Score = 29.3 bits (64), Expect = 6.9 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 16/115 (13%) Frame = +1 Query: 226 SAPSITTPCSGQTTTVTLSANSTD----GSNPLSPVSFXXXXXXXXXPSGSVGVSGLARS 393 S+PS T + S NS+D GS+ SP S V +S ++ Sbjct: 265 SSPSTTMSRKSSVCSSLNSVNSSDSRSSGSHSHSPSSHYRYRSSNLAQQAPVRLSSVSSH 324 Query: 394 GSSF------------PAQVSSTQKVANSFALCLPSDGVGAAIFGGGPFFLAPPA 522 S F P + +++N F+ C S A G GPF PA Sbjct: 325 DSGFISQDAFQSKSPSPMPPEAANQLSNGFSHCSLSSESHAGPVGAGPFPHCLPA 379
>LEU31_ARATH (Q9SA14) 3-isopropylmalate dehydrogenase 1, chloroplast precursor| (EC 1.1.1.85) (Beta-IPM dehydrogenase 1) (IMDH 1) (3-IPM-DH 1) Length = 406 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 299 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKAN 335
>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing| protein 1) (E3 ligase for inhibin receptor) (EULIR) Length = 2612 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 196 SAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSN 306 +A PL+ S P++TTP G T+TVT+S +S S+ Sbjct: 1587 TATSPLMGAQSFPNLTTP--GTTSTVTMSTSSVTSSS 1621
>EDAR_MOUSE (Q9R187) Tumor necrosis factor receptor superfamily member EDAR| precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (Ectodermal dysplasia receptor) (Downless) Length = 448 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 223 LSAPSITTPCSGQTTTVTLSANSTDGSNPLSP 318 L AP T C G T+ V+ ++ST G + LSP Sbjct: 139 LLAPPNTKECVGATSGVSAHSSSTSGGSTLSP 170
>US02_EHV1B (P28964) Gene 68 protein| Length = 418 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +3 Query: 84 SPGAPPARRL--HGGDRRQASAHQGNQGRRLHGALHGAPQRRPPTG 215 +PG P RR GGD R +A ++ R +HG A R P G Sbjct: 232 APGRPLPRRRPSEGGDARPEAALARSRARSVHGRRRDAAPPRGPAG 277
>SYNC2_ARATH (Q9SW95) Asparaginyl-tRNA synthetase, cytoplasmic 2 (EC 6.1.1.22)| (Asparagine--tRNA ligase 2) (AsnRS 2) Length = 638 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = -3 Query: 524 SAGGARKNGPPPKM---AAPTPSLGRQSANELA 435 SA +KN PPP + AAP+PS G A+ A Sbjct: 58 SARAVKKNSPPPPLPVVAAPSPSSGGDQAHTTA 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,510,406 Number of Sequences: 219361 Number of extensions: 1019258 Number of successful extensions: 3316 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3308 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
