Clone Name | bart29h01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472261.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1257 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcgagagcgagagcggtggc 126 |||||||||||||||||||| Sbjct: 247 gcgagagcgagagcggtggc 266
>gb|AC151808.1| Homo sapiens chromosome X clone RP11-1148L6 map p11.23, complete sequence Length = 37971 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aggaaaccaagggggaaaac 92 |||||||||||||||||||| Sbjct: 13895 aggaaaccaagggggaaaac 13876
>gb|AC115618.3| Homo sapiens chromosome X clone RP11-1148L6 map p11.23, complete sequence Length = 158454 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aggaaaccaagggggaaaac 92 |||||||||||||||||||| Sbjct: 24565 aggaaaccaagggggaaaac 24546
>ref|NM_153052.1| Mus musculus granzyme N (Gzmn), mRNA Length = 972 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gggggaaaacgtccatcaat 102 |||||||||||||||||||| Sbjct: 542 gggggaaaacgtccatcaat 561
>ref|XM_752045.1| Ustilago maydis 521 hypothetical protein (UM00991.1) partial mRNA Length = 2313 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tggcggcgagagcgagagcg 121 |||||||||||||||||||| Sbjct: 2170 tggcggcgagagcgagagcg 2151
>gb|AC135963.3| Mus musculus BAC clone RP23-346N11 from chromosome 7, complete sequence Length = 202404 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cacacaaggcaagcaagcac 23 |||||||||||||||||||| Sbjct: 121893 cacacaaggcaagcaagcac 121912
>gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G10, complete sequence Length = 228160 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gggggaaaacgtccatcaat 102 |||||||||||||||||||| Sbjct: 106074 gggggaaaacgtccatcaat 106055
>emb|AL772262.4| Human DNA sequence from clone RP11-444C24 on chromosome X, complete sequence Length = 147079 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aagaaatctctttcactagg 75 |||||||||||||||||||| Sbjct: 31034 aagaaatctctttcactagg 31015
>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21, complete sequence Length = 143093 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gcgagagcgagagcggtggc 126 |||||||||||||||||||| Sbjct: 87207 gcgagagcgagagcggtggc 87188
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gcgagagcgagagcggtggc 126 |||||||||||||||||||| Sbjct: 18871297 gcgagagcgagagcggtggc 18871278
>dbj|AB049454.2| Mus musculus GrN mRNA for granzyme N, complete cds Length = 975 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gggggaaaacgtccatcaat 102 |||||||||||||||||||| Sbjct: 545 gggggaaaacgtccatcaat 564
>dbj|AB100426.1| Mus musculus GzmN-2 mRNA for granzyme N-2, complete cds Length = 1006 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gggggaaaacgtccatcaat 102 |||||||||||||||||||| Sbjct: 545 gggggaaaacgtccatcaat 564
>gb|AC154829.2| Mus musculus BAC clone RP24-550F10 from 14, complete sequence Length = 136754 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gggggaaaacgtccatcaat 102 |||||||||||||||||||| Sbjct: 25171 gggggaaaacgtccatcaat 25152
>emb|AL603836.13| Mouse DNA sequence from clone RP23-56A14 on chromosome 7, complete sequence Length = 215366 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cacacaaggcaagcaagcac 23 |||||||||||||||||||| Sbjct: 46312 cacacaaggcaagcaagcac 46331
>gb|AC116501.7| Mus musculus chromosome 5, clone RP24-300D7, complete sequence Length = 174365 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 agctagctccaagcctcca 47 ||||||||||||||||||| Sbjct: 130382 agctagctccaagcctcca 130364
>gb|BC106062.1| Homo sapiens hippocampus abundant transcript-like 1, mRNA (cDNA clone MGC:117350 IMAGE:6162855), complete cds Length = 3049 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1057 gtggctgccatgtccagca 1075
>gb|AC159322.2| Mus musculus BAC clone RP23-33M5 from chromosome 8, complete sequence Length = 225520 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 gaaaccaagggggaaaacgtcca 97 |||||||||||||||||| |||| Sbjct: 105308 gaaaccaagggggaaaacatcca 105286
>gb|AC139293.4| Mus musculus BAC clone RP24-381N4 from chromosome 8, complete sequence Length = 161248 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 caagggggaaaacgtccat 98 ||||||||||||||||||| Sbjct: 136470 caagggggaaaacgtccat 136488
>ref|NM_032558.2| Homo sapiens hippocampus abundant transcript-like 1 (HIATL1), mRNA Length = 3312 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1320 gtggctgccatgtccagca 1338
>gb|AC125024.6| Mus musculus chromosome 5, clone RP24-320B23, complete sequence Length = 192305 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 agctagctccaagcctcca 47 ||||||||||||||||||| Sbjct: 27033 agctagctccaagcctcca 27015
>gb|BC021093.1| Homo sapiens hippocampus abundant transcript-like 1, mRNA (cDNA clone IMAGE:3626757), partial cds Length = 1070 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 430 gtggctgccatgtccagca 448
>gb|AC115798.14| Mus musculus chromosome 8, clone RP23-406D18, complete sequence Length = 225828 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 caagggggaaaacgtccat 98 ||||||||||||||||||| Sbjct: 167087 caagggggaaaacgtccat 167069
>gb|AC018541.7| Homo sapiens chromosome 8, clone RP11-108E14, complete sequence Length = 156674 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 acacaaggcaagcaagcac 23 ||||||||||||||||||| Sbjct: 92732 acacaaggcaagcaagcac 92750
>emb|CR698871.2|CNS0G277 Tetraodon nigroviridis full-length cDNA Length = 1199 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 gagcgagagcggtggctgc 129 ||||||||||||||||||| Sbjct: 1110 gagcgagagcggtggctgc 1128
>gb|BC018395.1| Mus musculus hippocampus abundant transcript-like 1, mRNA (cDNA clone IMAGE:3993056), complete cds Length = 2166 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 210 gtggctgccatgtccagca 228
>gb|BC033469.1| Mus musculus hippocampus abundant transcript-like 1, mRNA (cDNA clone MGC:37092 IMAGE:4951631), complete cds Length = 3450 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1384 gtggctgccatgtccagca 1402
>emb|AL358232.19| Human DNA sequence from clone RP11-533K9 on chromosome 9 Contains the 3' end of a novel gene simlar to mouse hippocampus abundant gene transcript 1, a gene for a novel protein and a leishmanolysin-like (metallopeptidase M8 family)(LMLN) pseudogene, complete sequence Length = 114340 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 66571 gtggctgccatgtccagca 66553
>emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chromosome 9p23-24.3 Contains the RLN1 gene for relaxin 1(H1) (RLXH1),the RLN2 gene for relaxin 2 (H2) (RLXH2), a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene, a novel pseudogene, the gene for uncharacterized hematopoietic stem/progenitor cells protein (MDS030), a novel pseudogene (FLJ39176) and four CpG islands, complete sequence Length = 156592 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 106 ggcgagagcgagagcggtggctg 128 |||||||||||||||||| |||| Sbjct: 141049 ggcgagagcgagagcggtagctg 141071
>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete sequence Length = 194523 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 acaaggcaagcaagcacca 25 ||||||||||||||||||| Sbjct: 111675 acaaggcaagcaagcacca 111693
>ref|NM_001011142.1| Xenopus tropicalis UDP-N-acetylglucosamine pyrophosphorylase 1 (uap1), mRNA Length = 2077 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 taggaaaccaagggggaaa 90 ||||||||||||||||||| Sbjct: 1494 taggaaaccaagggggaaa 1476
>gb|BC065439.1| Danio rerio zgc:77712, mRNA (cDNA clone MGC:77712 IMAGE:7000536), complete cds Length = 1957 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 gcggtggctgccatgtcca 137 ||||||||||||||||||| Sbjct: 969 gcggtggctgccatgtcca 987
>emb|CR610965.1| full-length cDNA clone CS0DI058YA07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2728 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 786 gtggctgccatgtccagca 804
>dbj|AK027659.1| Homo sapiens cDNA FLJ14753 fis, clone NT2RP3003101, weakly similar to Mouse mRNA for tetracycline transporter-like protein Length = 2593 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 625 gtggctgccatgtccagca 643
>gb|AC087183.9| Mus musculus Strain C57BL6/J Chromosome 8 RP23-316J6, complete sequence Length = 187359 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 gaaaccaagggggaaaacgtcca 97 |||||||||||||||||| |||| Sbjct: 140740 gaaaccaagggggaaaacatcca 140718
>gb|AC021955.11| Homo sapiens chromosome 8, clone RP11-238G17, complete sequence Length = 192139 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 acacaaggcaagcaagcac 23 ||||||||||||||||||| Sbjct: 156773 acacaaggcaagcaagcac 156755
>dbj|AK146596.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920030J17 product:Similar to hippocampus abundant gene transcript 1, full insert sequence Length = 3252 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1318 gtggctgccatgtccagca 1336
>gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217197 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 agagcggtggctgccatgt 134 ||||||||||||||||||| Sbjct: 124479 agagcggtggctgccatgt 124461
>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence Length = 190666 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 cacacacaaggcaagcaagcacc 24 ||||||| ||||||||||||||| Sbjct: 103472 cacacactaggcaagcaagcacc 103450
>gb|AC154713.2| Mus musculus BAC clone RP23-129G17 from chromosome 13, complete sequence Length = 197815 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 138398 gtggctgccatgtccagca 138416
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 ggcggcgagagcgagagcg 121 ||||||||||||||||||| Sbjct: 7987566 ggcggcgagagcgagagcg 7987548 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aagaaatctctttcactag 74 ||||||||||||||||||| Sbjct: 5202825 aagaaatctctttcactag 5202843
>ref|NM_205684.1| Danio rerio zgc:77712 (zgc:77712), mRNA Length = 1957 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 gcggtggctgccatgtcca 137 ||||||||||||||||||| Sbjct: 969 gcggtggctgccatgtcca 987
>dbj|AK222836.1| Homo sapiens mRNA for hypothetical protein FLJ14753 variant, clone: HEP09988 Length = 1128 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 635 gtggctgccatgtccagca 653
>gb|AF255650.1|AF255650 Homo sapiens DC27 mRNA, complete cds Length = 2286 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 292 gtggctgccatgtccagca 310
>ref|NM_133680.2| Mus musculus hippocampus abundant transcript-like 1 (Hiatl1), mRNA Length = 3450 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1384 gtggctgccatgtccagca 1402
>ref|XM_225093.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730414C17 (predicted) (LOC306687), mRNA Length = 3391 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 1354 gtggctgccatgtccagca 1372
>dbj|AK204989.1| Mus musculus cDNA, clone:Y1G0150E15, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000066830, based on BLAT search Length = 379 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 16 gtggctgccatgtccagca 34
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 ggcggcgagagcgagagcg 121 ||||||||||||||||||| Sbjct: 110981 ggcggcgagagcgagagcg 110963
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aagaaatctctttcactag 74 ||||||||||||||||||| Sbjct: 96278 aagaaatctctttcactag 96296
>emb|BX648846.1|HSM808997 Homo sapiens mRNA; cDNA DKFZp686N18153 (from clone DKFZp686N18153) Length = 2733 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 734 gtggctgccatgtccagca 752
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 tccatcaatggcggcgaga 112 ||||||||||||||||||| Sbjct: 2260903 tccatcaatggcggcgaga 2260885
>emb|CR848106.2| Xenopus tropicalis finished cDNA, clone TGas117b20 Length = 2026 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 taggaaaccaagggggaaa 90 ||||||||||||||||||| Sbjct: 1490 taggaaaccaagggggaaa 1472
>emb|AL136039.4|CNS01DVU Human chromosome 14 DNA sequence BAC R-799P8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174788 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaggcaagcaagcaccatc 27 ||||||||||||||||||| Sbjct: 132129 aaggcaagcaagcaccatc 132147
>emb|CT009534.18| Mouse DNA sequence from clone RP23-106A16 on chromosome 17, complete sequence Length = 195558 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 aggaaaccaagggggaaaa 91 ||||||||||||||||||| Sbjct: 73611 aggaaaccaagggggaaaa 73593
>gb|BC084497.1| Xenopus tropicalis UDP-N-acetylglucosamine pyrophosphorylase 1, mRNA (cDNA clone MGC:89532 IMAGE:6993149), complete cds Length = 2077 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 taggaaaccaagggggaaa 90 ||||||||||||||||||| Sbjct: 1494 taggaaaccaagggggaaa 1476
>emb|AL832415.1|HSM803723 Homo sapiens mRNA; cDNA DKFZp667N1613 (from clone DKFZp667N1613) Length = 2312 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 190 gtggctgccatgtccagca 208
>emb|AL929339.4| Human DNA sequence from clone RP11-266E11 on chromosome 9, complete sequence Length = 74915 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gtggctgccatgtccagca 140 ||||||||||||||||||| Sbjct: 13645 gtggctgccatgtccagca 13663 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,126,471 Number of Sequences: 3902068 Number of extensions: 1126471 Number of successful extensions: 82702 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82492 Number of HSP's gapped (non-prelim): 210 length of query: 141 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 120 effective length of database: 17,151,101,840 effective search space: 2058132220800 effective search space used: 2058132220800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)