ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR21_MOUSE (Q9EPU5) Tumor necrosis factor receptor superfamily ... 29 3.1
2TMOE_PSEME (Q00460) Toluene-4-monooxygenase system protein E (EC... 28 6.9

>TNR21_MOUSE (Q9EPU5) Tumor necrosis factor receptor superfamily member 21|
           precursor (TNFR-related death receptor 6) (Death
           receptor 6)
          Length = 655

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 DLTGAVVGCSVHVDCAGQGVELV 293
           D+  +V+ C  H DC GQ +E+V
Sbjct: 178 DVPSSVMKCKAHTDCLGQNLEVV 200



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>TMOE_PSEME (Q00460) Toluene-4-monooxygenase system protein E (EC 1.14.13.-)|
          Length = 326

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 127 GEGEDEGGLWKRRPFWM*LEESME 56
           G GE E  LW++ P W  L E ME
Sbjct: 180 GLGEHERELWEKEPGWQGLRELME 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.123    0.560 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,910,808
Number of Sequences: 219361
Number of extensions: 176596
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
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