ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29g08 |
|---|---|
| Clone Library Name | barley_pub |
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 78.2 bits (191), Expect = 1e-14 Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Frame = +1 Query: 253 VLLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCGTASSCAPRQPPPSS----RGVGEAG 420 +LLHGDLDL +++AR LPNMDMFSEH+RR F +C ++CA +P + R GE G Sbjct: 10 MLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTAC---NACA--RPTDTDDVDPRDKGEFG 64 Query: 421 -SXXXXXXXIITSDPYVTLSVAGAVVARTAVIPTARSP 531 +ITSDPYVT+ V A +ART V+ ++ P Sbjct: 65 DKNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEP 102
>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD| gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) Length = 858 Score = 62.0 bits (149), Expect = 1e-09 Identities = 37/92 (40%), Positives = 49/92 (53%) Frame = +1 Query: 256 LLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCGTASSCAPRQPPPSSRGVGEAGSXXXX 435 LLHG+LD+WV EA+ LPNMD F + + G + GE S Sbjct: 39 LLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGR------------KKVEGEKSSK--- 83 Query: 436 XXXIITSDPYVTLSVAGAVVARTAVIPTARSP 531 ITSDPYVT+S++GAV+ RT VI + +P Sbjct: 84 ----ITSDPYVTVSISGAVIGRTFVISNSENP 111
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 60.1 bits (144), Expect = 4e-09 Identities = 36/95 (37%), Positives = 49/95 (51%) Frame = +1 Query: 247 KPVLLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCGTASSCAPRQPPPSSRGVGEAGSX 426 K +L HG+LD+W+ A+ LPNMDMF + + F R P G Sbjct: 150 KVLLSHGNLDIWIYHAKNLPNMDMFHKTLGDMFG----------RLP----------GKI 189 Query: 427 XXXXXXIITSDPYVTLSVAGAVVARTAVIPTARSP 531 ITSDPYV++SVAGAV+ RT V+ + +P Sbjct: 190 EGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENP 224
>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD| gamma 3) Length = 866 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Frame = +1 Query: 226 DESPSPPKPVLLHGDLDLWVLEARLLPNMDMFSEH-IRRCFASCGTASSCAPRQPPPSSR 402 D S + LLHG+LD+WV EA+ LPNMD F + F G + Sbjct: 33 DTSSGSLRVELLHGNLDIWVKEAKHLPNMDGFHNTLVGGMFFGLGRRNHKVD-------- 84 Query: 403 GVGEAGSXXXXXXXIITSDPYVTLSVAGAVVARTAVIPTARSP 531 GE S ITSDPYVT+S++GAV+ RT VI + +P Sbjct: 85 --GENSSK-------ITSDPYVTVSISGAVIGRTFVISNSENP 118
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 57.8 bits (138), Expect = 2e-08 Identities = 35/95 (36%), Positives = 47/95 (49%) Frame = +1 Query: 247 KPVLLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCGTASSCAPRQPPPSSRGVGEAGSX 426 K +LLHG+LD+WV A LPN+D+F + + F G Sbjct: 111 KVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFG--------------------GMTNMI 150 Query: 427 XXXXXXIITSDPYVTLSVAGAVVARTAVIPTARSP 531 ITSDPYV++SVAGAV+ RT VI + +P Sbjct: 151 EGQLSKKITSDPYVSISVAGAVIGRTYVISNSENP 185
>PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD| gamma 2) Length = 824 Score = 38.5 bits (88), Expect = 0.012 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +1 Query: 451 TSDPYVTLSVAGAVVARTAVIPTARSP 531 TSDPYVT+S++GAV+ RT VI + +P Sbjct: 51 TSDPYVTVSISGAVIGRTFVISNSENP 77
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5037 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/49 (36%), Positives = 20/49 (40%) Frame = -2 Query: 533 GGLLAVGMTAVRATTAPATESVT*GSLVMILRWWWRRLPASPTPRLEGG 387 GGL G R T P +T L L WW R P +P P L G Sbjct: 3254 GGLAESG---ARYTEMPHVIEITLPMLCSYLPRWWERGPEAPPPALPAG 3299
>MAN1_MOUSE (Q9WU40) Inner nuclear membrane protein Man1 (LEM domain containing| protein 3) (Fragment) Length = 331 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 437 WWWRRLPASPTPRLEGGGCLGAQEEA 360 WW R PA P P+ G GA E+A Sbjct: 196 WWGARRPAGPEPQPPAAGSDGAAEDA 221
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/49 (36%), Positives = 20/49 (40%) Frame = -2 Query: 533 GGLLAVGMTAVRATTAPATESVT*GSLVMILRWWWRRLPASPTPRLEGG 387 GGL G R T P +T L L WW R P +P P L G Sbjct: 3255 GGLAESG---ARYTEMPHVIEITLPMLCSYLPRWWERGPEAPPPALPAG 3300
>ISPH_THET8 (Q5SMC8) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -1 Query: 318 HVHVGQQPRLEDPE-VEVPVQE 256 H HVG+ PRL DP VEVP E Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182
>ISPH_THET2 (Q72G65) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -1 Query: 318 HVHVGQQPRLEDPE-VEVPVQE 256 H HVG+ PRL DP VEVP E Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,147,503 Number of Sequences: 219361 Number of extensions: 424228 Number of successful extensions: 1739 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1734 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
