ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 108 1e-23
2DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re... 31 2.1
3DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.6

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score =  108 bits (269), Expect = 1e-23
 Identities = 74/163 (45%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
 Frame = +3

Query: 93  MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 260
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 261 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 437
                 DGEKKETLFSKLHR                VID+N                   
Sbjct: 61  KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119

Query: 438 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEKIGGD 557
                D E EHVTGLPAP APASVQT   HHDTDVVVEKI GD
Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKIDGD 162



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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 165 GPCPSPPPDRPQLPGMTGCSSHPP 94
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 162 PCPSPPPDRPQLPGMTGCSSHPP 94
           P P PPP  P LPG T  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,576,530
Number of Sequences: 219361
Number of extensions: 605248
Number of successful extensions: 3170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3091
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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